CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56002272|56002473
Strand +
CircType exon
Host Gene ENSG00000139531.11;
Algorism CIRI2;
Sequence TTCTTTCTCCCTGGTTGGCCATTGGTTCCTTAAGTTGGAACTTAGTTTCTCCAGGGATAGGTGGGAAAAGTGGGATCTGGCTTTCTCTGTCCTCCCTGGACACACTCTCTCAACTGTCTTATTTGCAAGGTATGACATTGTAAAAGACACTAAGGGTGGCAGATAGGGGCTAGGAGGCAAGTCCTGGGATGGGCTGGCCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56002272|56002473 hsa-miR-198 0 0 1
chr12:56002272|56002473 hsa-miR-511-5p 0 0 1
chr12:56002272|56002473 hsa-miR-511-3p 0 0 1
chr12:56002272|56002473 hsa-miR-527 0 0 1
chr12:56002272|56002473 hsa-miR-641 0 0 1
chr12:56002272|56002473 hsa-miR-1321 0 0 1
chr12:56002272|56002473 hsa-miR-574-5p 0 1 1
chr12:56002272|56002473 hsa-miR-1224-3p 0 0 1
chr12:56002272|56002473 hsa-miR-188-5p 0 0 1
chr12:56002272|56002473 hsa-miR-188-3p 0 0 1
chr12:56002272|56002473 hsa-miR-518a-5p 0 0 1
chr12:56002272|56002473 hsa-miR-1260 0 0 1
chr12:56002272|56002473 hsa-miR-1280 0 0 1
chr12:56002272|56002473 hsa-miR-1260a 0 1 0
chr12:56002272|56002473 hsa-miR-4270 0 1 0
chr12:56002272|56002473 hsa-miR-3685 0 1 0
chr12:56002272|56002473 hsa-miR-4441 0 1 0
chr12:56002272|56002473 hsa-miR-3972 1 1 0
chr12:56002272|56002473 hsa-miR-4641 1 0 0
chr12:56002272|56002473 hsa-miR-4669 0 1 0
chr12:56002272|56002473 hsa-miR-4682 1 0 0
chr12:56002272|56002473 hsa-miR-4739 1 1 0
chr12:56002272|56002473 hsa-miR-5704 0 1 0
chr12:56002272|56002473 hsa-miR-8083 0 1 0
chr12:56002272|56002473 hsa-miR-12120 0 1 0
chr12:56002272|56002473 hsa-miR-6840-3p 0 1 0
chr12:56002272|56002473 hsa-miR-4700-3p 0 1 0
chr12:56002272|56002473 hsa-miR-6836-3p 0 1 0
chr12:56002272|56002473 hsa-miR-671-5p 1 0 0
chr12:56002272|56002473 hsa-miR-6894-5p 1 1 0
chr12:56002272|56002473 hsa-miR-1225-3p 1 0 0
chr12:56002272|56002473 hsa-miR-4695-5p 1 0 0
chr12:56002272|56002473 hsa-miR-4655-5p 1 0 0
chr12:56002272|56002473 hsa-miR-6770-5p 0 1 0
chr12:56002272|56002473 hsa-miR-486-3p 1 0 0
chr12:56002272|56002473 hsa-miR-6760-5p 0 1 0
chr12:56002272|56002473 hsa-miR-3194-5p 1 1 0
chr12:56002272|56002473 hsa-miR-6858-3p 1 0 0
chr12:56002272|56002473 hsa-miR-6753-5p 0 1 0
chr12:56002272|56002473 hsa-miR-6771-5p 1 0 0
chr12:56002272|56002473 hsa-miR-6878-5p 0 1 0
chr12:56002272|56002473 hsa-miR-6769a-3p 1 1 0
chr12:56002272|56002473 hsa-miR-584-3p 1 0 0
chr12:56002272|56002473 hsa-miR-532-5p 0 1 0
chr12:56002272|56002473 hsa-miR-7113-5p 0 1 0
chr12:56002272|56002473 hsa-miR-5004-5p 0 1 0
chr12:56002272|56002473 hsa-miR-3156-3p 0 1 0
chr12:56002272|56002473 hsa-miR-6754-5p 0 1 0
chr12:56002272|56002473 hsa-miR-6879-5p 0 1 0
chr12:56002272|56002473 hsa-miR-4728-5p 0 1 0
chr12:56002272|56002473 hsa-miR-6795-5p 0 1 0
chr12:56002272|56002473 hsa-miR-6887-5p 1 1 0
chr12:56002272|56002473 hsa-miR-6819-3p 0 1 0
chr12:56002272|56002473 hsa-miR-4690-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:56002272|56002473
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence MVGHWFLKLELSFSRDRWEKWDLAFSVLPGHTLSTVLFARYDIVKDTKGGR
Nucleotide Sequence CTGGTTGGCCATTGGTTCCTTAAGTTGGAACTTAGTTTCTCCAGGGATAGGTGGGAAAAGTGGGATCTGGCTTTCTCTGTCCTCCCTGGACACACTCTCTCAACTGTCTTATTTGCAAGGTATGACATTGTAAAAGACACTAAGGGTGGCAGATAG

CircID chr12:56002272|56002473
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MAIGSLSWNLVSPGIGGKSGIWLSLSSLDTLSQLSYLQGMTL
Nucleotide Sequence TTGGCCATTGGTTCCTTAAGTTGGAACTTAGTTTCTCCAGGGATAGGTGGGAAAAGTGGGATCTGGCTTTCTCTGTCCTCCCTGGACACACTCTCTCAACTGTCTTATTTGCAAGGTATGACATTGTAA

CircID chr12:56002272|56002473
ORF Type ORF3
Protein Length 60
Nucleotide Length 180
Protein Sequence MPPSPYLPPLVSFTMSYLANKTVERVCPGRTEKARSHFSHLSLEKLSSNLRNQWPTREKE
Nucleotide Sequence TTGCCTCCTAGCCCCTATCTGCCACCCTTAGTGTCTTTTACAATGTCATACCTTGCAAATAAGACAGTTGAGAGAGTGTGTCCAGGGAGGACAGAGAAAGCCAGATCCCACTTTTCCCACCTATCCCTGGAGAAACTAAGTTCCAACTTAAGGAACCAATGGCCAACCAGGGAGAAAGAA

CircID chr12:56002272|56002473
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MQIRQLRECVQGGQRKPDPTFPTYPWRN
Nucleotide Sequence TTGCAAATAAGACAGTTGAGAGAGTGTGTCCAGGGAGGACAGAGAAAGCCAGATCCCACTTTTCCCACCTATCCCTGGAGAAACTAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites