CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56120621|56120772
Strand +
CircType exon
Host Gene ENSG00000135482.5;
Algorism CIRI2;
Sequence CCCCAAGTTGGACACCTCGCTCATGTCTGGGTGGCGATATCGGCAACGCTTGCCTCGCTTGCACACATTCCTCAAGAAGTCTCTACAGATGGCATCTGAGCTGGCCCCGCCACTGCCTACCCCTGCCCCACTGGCCTCCTCGCTGCCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56120621|56120772 hsa-miR-19a-5p 0 0 1
chr12:56120621|56120772 hsa-miR-19a-3p 0 0 1
chr12:56120621|56120772 hsa-miR-34a-5p 0 0 1
chr12:56120621|56120772 hsa-miR-34a-3p 0 0 1
chr12:56120621|56120772 hsa-miR-206 0 1 1
chr12:56120621|56120772 hsa-miR-449a 0 1 1
chr12:56120621|56120772 hsa-miR-526b-5p 0 0 1
chr12:56120621|56120772 hsa-miR-526b-3p 0 0 1
chr12:56120621|56120772 hsa-miR-613 0 0 1
chr12:56120621|56120772 hsa-miR-449b-5p 0 0 1
chr12:56120621|56120772 hsa-miR-449b-3p 0 0 1
chr12:56120621|56120772 hsa-miR-744-5p 0 0 1
chr12:56120621|56120772 hsa-miR-744-3p 0 0 1
chr12:56120621|56120772 hsa-miR-940 0 0 1
chr12:56120621|56120772 hsa-miR-1224-5p 0 0 1
chr12:56120621|56120772 hsa-miR-486-3p 1 0 1
chr12:56120621|56120772 hsa-miR-885-3p 1 1 1
chr12:56120621|56120772 hsa-miR-1207-5p 1 1 1
chr12:56120621|56120772 hsa-miR-34c-5p 0 0 1
chr12:56120621|56120772 hsa-miR-151-5p 0 0 1
chr12:56120621|56120772 hsa-miR-19b 0 0 1
chr12:56120621|56120772 hsa-miR-1 0 0 1
chr12:56120621|56120772 hsa-miR-663 0 0 1
chr12:56120621|56120772 hsa-miR-608 1 0 0
chr12:56120621|56120772 hsa-miR-611 1 0 0
chr12:56120621|56120772 hsa-miR-663a 1 0 0
chr12:56120621|56120772 hsa-miR-762 1 0 0
chr12:56120621|56120772 hsa-miR-1182 1 0 0
chr12:56120621|56120772 hsa-miR-1268a 1 0 0
chr12:56120621|56120772 hsa-miR-1275 1 0 0
chr12:56120621|56120772 hsa-miR-3131 1 0 0
chr12:56120621|56120772 hsa-miR-3132 1 0 0
chr12:56120621|56120772 hsa-miR-3141 1 0 0
chr12:56120621|56120772 hsa-miR-3147 1 0 0
chr12:56120621|56120772 hsa-miR-3188 1 0 0
chr12:56120621|56120772 hsa-miR-3196 1 0 0
chr12:56120621|56120772 hsa-miR-4298 1 0 0
chr12:56120621|56120772 hsa-miR-4260 1 0 0
chr12:56120621|56120772 hsa-miR-4267 0 1 0
chr12:56120621|56120772 hsa-miR-3666 1 0 0
chr12:56120621|56120772 hsa-miR-1268b 1 0 0
chr12:56120621|56120772 hsa-miR-4466 1 0 0
chr12:56120621|56120772 hsa-miR-4467 1 0 0
chr12:56120621|56120772 hsa-miR-4479 1 0 0
chr12:56120621|56120772 hsa-miR-4481 1 0 0
chr12:56120621|56120772 hsa-miR-4488 1 0 0
chr12:56120621|56120772 hsa-miR-4489 1 0 0
chr12:56120621|56120772 hsa-miR-3960 1 0 0
chr12:56120621|56120772 hsa-miR-4651 1 0 0
chr12:56120621|56120772 hsa-miR-4688 1 0 0
chr12:56120621|56120772 hsa-miR-4689 1 0 0
chr12:56120621|56120772 hsa-miR-4692 1 0 0
chr12:56120621|56120772 hsa-miR-4706 1 1 0
chr12:56120621|56120772 hsa-miR-4730 1 0 0
chr12:56120621|56120772 hsa-miR-4739 1 0 0
chr12:56120621|56120772 hsa-miR-5090 1 0 0
chr12:56120621|56120772 hsa-miR-5708 0 1 0
chr12:56120621|56120772 hsa-miR-5787 1 0 0
chr12:56120621|56120772 hsa-miR-6090 1 0 0
chr12:56120621|56120772 hsa-miR-6860 1 0 0
chr12:56120621|56120772 hsa-miR-7150 1 0 0
chr12:56120621|56120772 hsa-miR-7704 1 0 0
chr12:56120621|56120772 hsa-miR-8072 1 0 0
chr12:56120621|56120772 hsa-miR-12115 1 0 0
chr12:56120621|56120772 hsa-miR-500b-3p 0 1 0
chr12:56120621|56120772 hsa-miR-6765-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6825-5p 1 0 0
chr12:56120621|56120772 hsa-miR-1972 1 0 0
chr12:56120621|56120772 hsa-miR-6854-5p 0 1 0
chr12:56120621|56120772 hsa-miR-1227-5p 1 0 0
chr12:56120621|56120772 hsa-miR-7114-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6089 1 1 0
chr12:56120621|56120772 hsa-miR-3192-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6757-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6880-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4695-5p 1 1 0
chr12:56120621|56120772 hsa-miR-6890-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6727-5p 1 0 0
chr12:56120621|56120772 hsa-miR-3622b-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6806-5p 1 1 0
chr12:56120621|56120772 hsa-miR-6721-5p 1 1 0
chr12:56120621|56120772 hsa-miR-197-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6742-5p 1 0 0
chr12:56120621|56120772 hsa-miR-3151-5p 1 1 0
chr12:56120621|56120772 hsa-miR-3180-3p 1 0 0
chr12:56120621|56120772 hsa-miR-6732-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6798-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6881-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6782-5p 1 0 0
chr12:56120621|56120772 hsa-miR-5008-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6786-5p 1 1 0
chr12:56120621|56120772 hsa-miR-6835-5p 1 1 0
chr12:56120621|56120772 hsa-miR-1229-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4640-5p 1 1 0
chr12:56120621|56120772 hsa-miR-1908-5p 1 1 0
chr12:56120621|56120772 hsa-miR-1228-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4690-5p 1 0 0
chr12:56120621|56120772 hsa-miR-92b-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4732-5p 1 0 0
chr12:56120621|56120772 hsa-miR-3648 1 0 0
chr12:56120621|56120772 hsa-miR-4787-5p 1 0 0
chr12:56120621|56120772 hsa-miR-425-3p 1 0 0
chr12:56120621|56120772 hsa-miR-194-3p 1 1 0
chr12:56120621|56120772 hsa-miR-574-5p 1 1 0
chr12:56120621|56120772 hsa-miR-7112-5p 1 0 0
chr12:56120621|56120772 hsa-miR-423-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4750-5p 1 0 0
chr12:56120621|56120772 hsa-miR-10400-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4763-3p 1 1 0
chr12:56120621|56120772 hsa-miR-6787-5p 1 1 0
chr12:56120621|56120772 hsa-miR-6816-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6865-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6775-5p 0 1 0
chr12:56120621|56120772 hsa-miR-3180 1 0 0
chr12:56120621|56120772 hsa-miR-6743-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6754-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6756-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6819-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6851-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6722-3p 1 1 0
chr12:56120621|56120772 hsa-miR-6763-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6808-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6879-5p 1 0 0
chr12:56120621|56120772 hsa-miR-7111-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4728-5p 1 0 0
chr12:56120621|56120772 hsa-miR-5196-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6780b-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6836-5p 1 0 0
chr12:56120621|56120772 hsa-miR-10396a-5p 1 0 0
chr12:56120621|56120772 hsa-miR-10396b-5p 1 1 0
chr12:56120621|56120772 hsa-miR-1237-5p 1 0 0
chr12:56120621|56120772 hsa-miR-1909-3p 1 0 0
chr12:56120621|56120772 hsa-miR-328-5p 1 0 0
chr12:56120621|56120772 hsa-miR-449c-5p 1 1 0
chr12:56120621|56120772 hsa-miR-4632-5p 0 1 0
chr12:56120621|56120772 hsa-miR-4649-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4725-3p 1 0 0
chr12:56120621|56120772 hsa-miR-4726-5p 1 1 0
chr12:56120621|56120772 hsa-miR-4745-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4749-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6729-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6738-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6777-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6858-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6889-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4436b-3p 1 0 0
chr12:56120621|56120772 hsa-miR-6845-5p 1 1 0
chr12:56120621|56120772 hsa-miR-6885-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4758-5p 1 0 0
chr12:56120621|56120772 hsa-miR-34b-5p 0 1 0
chr12:56120621|56120772 hsa-miR-365a-5p 1 0 0
chr12:56120621|56120772 hsa-miR-365b-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6511a-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6511b-5p 1 0 0
chr12:56120621|56120772 hsa-miR-3085-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6856-5p 1 0 0
chr12:56120621|56120772 hsa-miR-4472 1 0 0
chr12:56120621|56120772 hsa-miR-6790-5p 1 0 0
chr12:56120621|56120772 hsa-miR-6762-5p 1 1 0
chr12:56120621|56120772 hsa-miR-1295b-5p 0 1 0
chr12:56120621|56120772 hsa-miR-2682-5p 0 1 0
chr12:56120621|56120772 hsa-miR-4781-5p 0 1 0
chr12:56120621|56120772 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:56120621|56120772
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MDTSLMSGWRYRQRLPRLHTFLKKSLQMASELAPPLPTPAPLASSLPP
Nucleotide Sequence TTGGACACCTCGCTCATGTCTGGGTGGCGATATCGGCAACGCTTGCCTCGCTTGCACACATTCCTCAAGAAGTCTCTACAGATGGCATCTGAGCTGGCCCCGCCACTGCCTACCCCTGCCCCACTGGCCTCCTCGCTGCCACCA
CircID chr12:56120621|56120772
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MGGDIGNACLACTHSSRSLYRWHLSWPRHCLPLPHWPPRCHH
Nucleotide Sequence CTGGGTGGCGATATCGGCAACGCTTGCCTCGCTTGCACACATTCCTCAAGAAGTCTCTACAGATGGCATCTGAGCTGGCCCCGCCACTGCCTACCCCTGCCCCACTGGCCTCCTCGCTGCCACCAC
CircID chr12:56120621|56120772
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MRNVCKRGKRCRYRHPDMSEVSNLG
Nucleotide Sequence TTGAGGAATGTGTGCAAGCGAGGCAAGCGTTGCCGATATCGCCACCCAGACATGAGCGAGGTGTCCAACTTGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab