CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56121368|56121601
Strand -
CircType exon
Host Gene ENSG00000135482.5;
Algorism CIRI2;
Sequence TGGAACAAAATGCTCAGTTCCGCAATCAGGCCAAGGTCATAACCCTGAGCTCCACTGCACCAGCGACTGAGCAGACTCTGGCCCCCACTGTGGGCACTGTTGCCACTTTTAACCATGGCATTGCCCAGACTCACACTACTCTCAGCAGCCAGGCTCTACAGCCTCGTCCAGTGTCCCAGCAAGAACTGGTGGCCCCTGCTGGAGCTCCAGCTGCTCCCCCAACTAATGCTGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56121368|56121601 hsa-miR-107 1 1 1
chr12:56121368|56121601 hsa-miR-214-5p 0 0 1
chr12:56121368|56121601 hsa-miR-214-3p 0 0 1
chr12:56121368|56121601 hsa-miR-375-5p 0 0 1
chr12:56121368|56121601 hsa-miR-375-3p 0 0 1
chr12:56121368|56121601 hsa-miR-604 0 0 1
chr12:56121368|56121601 hsa-miR-612 0 0 1
chr12:56121368|56121601 hsa-miR-625-5p 0 0 1
chr12:56121368|56121601 hsa-miR-625-3p 0 0 1
chr12:56121368|56121601 hsa-miR-627-5p 0 0 1
chr12:56121368|56121601 hsa-miR-627-3p 0 0 1
chr12:56121368|56121601 hsa-miR-646 0 0 1
chr12:56121368|56121601 hsa-miR-647 0 0 1
chr12:56121368|56121601 hsa-miR-648 0 0 1
chr12:56121368|56121601 hsa-miR-766-5p 0 0 1
chr12:56121368|56121601 hsa-miR-766-3p 0 0 1
chr12:56121368|56121601 hsa-miR-924 0 0 1
chr12:56121368|56121601 hsa-miR-939-5p 0 0 1
chr12:56121368|56121601 hsa-miR-939-3p 0 0 1
chr12:56121368|56121601 hsa-miR-548n 0 0 1
chr12:56121368|56121601 hsa-miR-1266-5p 0 0 1
chr12:56121368|56121601 hsa-miR-1266-3p 0 0 1
chr12:56121368|56121601 hsa-miR-1275 1 1 1
chr12:56121368|56121601 hsa-miR-485-5p 0 0 1
chr12:56121368|56121601 hsa-miR-1207-3p 0 0 1
chr12:56121368|56121601 hsa-miR-767-3p 0 0 1
chr12:56121368|56121601 hsa-miR-338-3p 0 0 1
chr12:56121368|56121601 hsa-miR-1302 0 0 1
chr12:56121368|56121601 hsa-miR-142-3p 0 0 1
chr12:56121368|56121601 hsa-miR-128 0 0 1
chr12:56121368|56121601 hsa-miR-103 0 0 1
chr12:56121368|56121601 hsa-miR-138 0 0 1
chr12:56121368|56121601 hsa-miR-1285 0 0 1
chr12:56121368|56121601 hsa-miR-1201 0 0 1
chr12:56121368|56121601 hsa-miR-1183 0 1 0
chr12:56121368|56121601 hsa-miR-2861 1 0 0
chr12:56121368|56121601 hsa-miR-3196 1 0 0
chr12:56121368|56121601 hsa-miR-4298 1 1 0
chr12:56121368|56121601 hsa-miR-3654 0 1 0
chr12:56121368|56121601 hsa-miR-4425 1 0 0
chr12:56121368|56121601 hsa-miR-4447 0 1 0
chr12:56121368|56121601 hsa-miR-3135b 0 1 0
chr12:56121368|56121601 hsa-miR-4486 1 1 0
chr12:56121368|56121601 hsa-miR-4507 1 0 0
chr12:56121368|56121601 hsa-miR-4518 0 1 0
chr12:56121368|56121601 hsa-miR-4538 1 0 0
chr12:56121368|56121601 hsa-miR-4656 1 0 0
chr12:56121368|56121601 hsa-miR-4706 1 0 0
chr12:56121368|56121601 hsa-miR-5572 1 0 0
chr12:56121368|56121601 hsa-miR-6081 1 0 0
chr12:56121368|56121601 hsa-miR-6090 1 0 0
chr12:56121368|56121601 hsa-miR-6860 1 1 0
chr12:56121368|56121601 hsa-miR-8075 1 0 0
chr12:56121368|56121601 hsa-miR-9718 1 0 0
chr12:56121368|56121601 hsa-miR-12115 0 1 0
chr12:56121368|56121601 hsa-miR-12119 1 0 0
chr12:56121368|56121601 hsa-miR-138-5p 1 1 0
chr12:56121368|56121601 hsa-miR-143-5p 0 1 0
chr12:56121368|56121601 hsa-miR-370-3p 1 0 0
chr12:56121368|56121601 hsa-miR-128-1-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6765-5p 1 0 0
chr12:56121368|56121601 hsa-miR-212-5p 0 1 0
chr12:56121368|56121601 hsa-miR-6861-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6825-5p 1 0 0
chr12:56121368|56121601 hsa-miR-4687-3p 1 0 0
chr12:56121368|56121601 hsa-miR-6854-5p 0 1 0
chr12:56121368|56121601 hsa-miR-4653-3p 1 0 0
chr12:56121368|56121601 hsa-miR-3064-5p 1 1 0
chr12:56121368|56121601 hsa-miR-7160-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6741-5p 1 0 0
chr12:56121368|56121601 hsa-miR-432-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6871-5p 1 0 0
chr12:56121368|56121601 hsa-miR-1292-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6772-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6829-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6874-5p 0 1 0
chr12:56121368|56121601 hsa-miR-615-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6786-5p 1 0 0
chr12:56121368|56121601 hsa-miR-5088-5p 1 0 0
chr12:56121368|56121601 hsa-miR-4640-5p 1 1 0
chr12:56121368|56121601 hsa-miR-4732-5p 0 1 0
chr12:56121368|56121601 hsa-miR-6749-5p 1 0 0
chr12:56121368|56121601 hsa-miR-103a-3p 1 1 0
chr12:56121368|56121601 hsa-miR-6824-5p 1 0 0
chr12:56121368|56121601 hsa-miR-194-3p 0 1 0
chr12:56121368|56121601 hsa-miR-6813-3p 0 1 0
chr12:56121368|56121601 hsa-miR-216a-3p 0 1 0
chr12:56121368|56121601 hsa-miR-371b-3p 0 1 0
chr12:56121368|56121601 hsa-miR-4796-3p 0 1 0
chr12:56121368|56121601 hsa-miR-3688-5p 0 1 0
chr12:56121368|56121601 hsa-miR-5007-5p 1 1 0
chr12:56121368|56121601 hsa-miR-4763-3p 1 0 0
chr12:56121368|56121601 hsa-miR-1343-5p 1 1 0
chr12:56121368|56121601 hsa-miR-5001-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6726-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6743-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6752-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6756-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6803-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6813-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6722-3p 1 0 0
chr12:56121368|56121601 hsa-miR-6751-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6763-5p 0 1 0
chr12:56121368|56121601 hsa-miR-6780a-5p 1 0 0
chr12:56121368|56121601 hsa-miR-7111-5p 1 0 0
chr12:56121368|56121601 hsa-miR-5189-5p 0 1 0
chr12:56121368|56121601 hsa-miR-1909-3p 0 1 0
chr12:56121368|56121601 hsa-miR-328-5p 1 1 0
chr12:56121368|56121601 hsa-miR-4649-5p 1 0 0
chr12:56121368|56121601 hsa-miR-4726-5p 1 1 0
chr12:56121368|56121601 hsa-miR-6729-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6777-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6848-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6887-5p 1 0 0
chr12:56121368|56121601 hsa-miR-6889-5p 1 0 0
chr12:56121368|56121601 hsa-miR-3187-5p 1 1 0
chr12:56121368|56121601 hsa-miR-6845-5p 0 1 0
chr12:56121368|56121601 hsa-miR-6885-5p 1 0 0
chr12:56121368|56121601 hsa-miR-3940-5p 1 0 0
chr12:56121368|56121601 hsa-miR-1285-3p 0 1 0
chr12:56121368|56121601 hsa-miR-1914-3p 1 0 0
chr12:56121368|56121601 hsa-miR-4665-5p 1 1 0
chr12:56121368|56121601 hsa-miR-6762-5p 1 1 0
chr12:56121368|56121601 hsa-miR-3085-3p 0 1 0
chr12:56121368|56121601 hsa-miR-6764-5p 1 0 0
chr12:56121368|56121601 hsa-miR-128-2-5p 1 0 0
chr12:56121368|56121601 hsa-miR-9983-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:56121368|56121601
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence MHQRLSRLWPPLWALLPLLTMALPRLTLLSAARLYSLVQCPSKNWWPLLELQLLPQLMLH
Nucleotide Sequence CTGCACCAGCGACTGAGCAGACTCTGGCCCCCACTGTGGGCACTGTTGCCACTTTTAACCATGGCATTGCCCAGACTCACACTACTCTCAGCAGCCAGGCTCTACAGCCTCGTCCAGTGTCCCAGCAAGAACTGGTGGCCCCTGCTGGAGCTCCAGCTGCTCCCCCAACTAATGCTGCAC
CircID chr12:56121368|56121601
ORF Type ORF2
Protein Length 63
Nucleotide Length 189
Protein Sequence MSSTAPATEQTLAPTVGTVATFNHGIAQTHTTLSSQALQPRPVSQQELVAPAGAPAAPPTNAA
Nucleotide Sequence CTGAGCTCCACTGCACCAGCGACTGAGCAGACTCTGGCCCCCACTGTGGGCACTGTTGCCACTTTTAACCATGGCATTGCCCAGACTCACACTACTCTCAGCAGCCAGGCTCTACAGCCTCGTCCAGTGTCCCAGCAAGAACTGGTGGCCCCTGCTGGAGCTCCAGCTGCTCCCCCAACTAATGCTGCA
CircID chr12:56121368|56121601
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MGEQLELQQGPPVLAGTLDEAVEPGC
Nucleotide Sequence TTGGGGGAGCAGCTGGAGCTCCAGCAGGGGCCACCAGTTCTTGCTGGGACACTGGACGAGGCTGTAGAGCCTGGCTGCTGA
CircID chr12:56121368|56121601
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MAAESSVSLGNAMVKSGNSAHSGGQSLLSRWCSGAQGYDLGLIAELSILF
Nucleotide Sequence CTGGCTGCTGAGAGTAGTGTGAGTCTGGGCAATGCCATGGTTAAAAGTGGCAACAGTGCCCACAGTGGGGGCCAGAGTCTGCTCAGTCGCTGGTGCAGTGGAGCTCAGGGTTATGACCTTGGCCTGATTGCGGAACTGAGCATTTTGTTC
CircID chr12:56121368|56121601
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MPWLKVATVPTVGARVCSVAGAVELRVMTLA
Nucleotide Sequence ATGCCATGGTTAAAAGTGGCAACAGTGCCCACAGTGGGGGCCAGAGTCTGCTCAGTCGCTGGTGCAGTGGAGCTCAGGGTTATGACCTTGGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab