CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56160043|56160320
Strand +
CircType exon
Host Gene ENSG00000092841.17;
Algorism CIRI2;
Sequence CTTCATAGTTGATACAACCATTGCTGTCCTCATGCCCTGCCACCAGCATCTCTACTTCTTCCTCTGTCATCTTCTCACCTGCAGGGGGAAAGAAAGCATTTTTGGAATTGGGTGACAAGTGAGGTACCTCAGGGTGCCATCTCAGCTCAAGGACAAGGACACAGAACCTTACCCAGTGTGACAAGAACATGCCGGATTTCAGCACCCATGACGGTGCCATTTCCTTCCTTGTCAAACACCCGAAGTCCTTCGACATAATCCTCATAGGTGCCCTGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56160043|56160320 hsa-let-7b-5p 0 0 1
chr12:56160043|56160320 hsa-let-7b-3p 0 0 1
chr12:56160043|56160320 hsa-let-7c-5p 0 0 1
chr12:56160043|56160320 hsa-let-7c-3p 0 0 1
chr12:56160043|56160320 hsa-let-7d-5p 0 0 1
chr12:56160043|56160320 hsa-let-7d-3p 0 0 1
chr12:56160043|56160320 hsa-let-7e-5p 0 0 1
chr12:56160043|56160320 hsa-let-7e-3p 0 0 1
chr12:56160043|56160320 hsa-miR-98-5p 0 0 1
chr12:56160043|56160320 hsa-miR-98-3p 0 0 1
chr12:56160043|56160320 hsa-miR-183-5p 0 0 1
chr12:56160043|56160320 hsa-miR-183-3p 0 0 1
chr12:56160043|56160320 hsa-let-7g-5p 0 0 1
chr12:56160043|56160320 hsa-let-7g-3p 0 0 1
chr12:56160043|56160320 hsa-let-7i-5p 0 0 1
chr12:56160043|56160320 hsa-let-7i-3p 0 0 1
chr12:56160043|56160320 hsa-miR-143-5p 0 0 1
chr12:56160043|56160320 hsa-miR-143-3p 0 0 1
chr12:56160043|56160320 hsa-miR-202-5p 0 0 1
chr12:56160043|56160320 hsa-miR-202-3p 0 0 1
chr12:56160043|56160320 hsa-miR-555 0 0 1
chr12:56160043|56160320 hsa-miR-558 0 0 1
chr12:56160043|56160320 hsa-miR-578 0 0 1
chr12:56160043|56160320 hsa-miR-609 0 0 1
chr12:56160043|56160320 hsa-miR-657 0 0 1
chr12:56160043|56160320 hsa-miR-1205 0 0 1
chr12:56160043|56160320 hsa-miR-1253 0 0 1
chr12:56160043|56160320 hsa-miR-1252-5p 0 0 1
chr12:56160043|56160320 hsa-miR-1252-3p 0 0 1
chr12:56160043|56160320 hsa-miR-125a-3p 0 0 1
chr12:56160043|56160320 hsa-miR-1224-5p 0 0 1
chr12:56160043|56160320 hsa-miR-1207-5p 1 0 1
chr12:56160043|56160320 hsa-miR-125a-5p 0 1 1
chr12:56160043|56160320 hsa-miR-125b 0 0 1
chr12:56160043|56160320 hsa-miR-1308 0 0 1
chr12:56160043|56160320 hsa-miR-138 0 0 1
chr12:56160043|56160320 hsa-let-7a 0 0 1
chr12:56160043|56160320 hsa-let-7f 0 0 1
chr12:56160043|56160320 hsa-miR-1300 0 0 1
chr12:56160043|56160320 hsa-miR-514 0 0 1
chr12:56160043|56160320 hsa-miR-453 0 0 1
chr12:56160043|56160320 hsa-miR-1185 0 0 1
chr12:56160043|56160320 hsa-miR-663a 1 0 0
chr12:56160043|56160320 hsa-miR-1183 1 0 0
chr12:56160043|56160320 hsa-miR-1263 0 1 0
chr12:56160043|56160320 hsa-miR-3125 1 1 0
chr12:56160043|56160320 hsa-miR-544b 0 1 0
chr12:56160043|56160320 hsa-miR-3147 1 0 0
chr12:56160043|56160320 hsa-miR-3916 1 1 0
chr12:56160043|56160320 hsa-miR-3945 1 0 0
chr12:56160043|56160320 hsa-miR-1268b 1 0 0
chr12:56160043|56160320 hsa-miR-4440 1 0 0
chr12:56160043|56160320 hsa-miR-4451 1 0 0
chr12:56160043|56160320 hsa-miR-4466 1 0 0
chr12:56160043|56160320 hsa-miR-4476 0 1 0
chr12:56160043|56160320 hsa-miR-4505 1 0 0
chr12:56160043|56160320 hsa-miR-4510 1 0 0
chr12:56160043|56160320 hsa-miR-4533 0 1 0
chr12:56160043|56160320 hsa-miR-4689 1 0 0
chr12:56160043|56160320 hsa-miR-4739 1 0 0
chr12:56160043|56160320 hsa-miR-5090 1 0 0
chr12:56160043|56160320 hsa-miR-5093 0 1 0
chr12:56160043|56160320 hsa-miR-6076 1 0 0
chr12:56160043|56160320 hsa-miR-6086 1 0 0
chr12:56160043|56160320 hsa-miR-6088 1 0 0
chr12:56160043|56160320 hsa-miR-6127 1 0 0
chr12:56160043|56160320 hsa-miR-6132 1 1 0
chr12:56160043|56160320 hsa-miR-6133 1 0 0
chr12:56160043|56160320 hsa-miR-7150 1 1 0
chr12:56160043|56160320 hsa-miR-8072 1 0 0
chr12:56160043|56160320 hsa-miR-12115 1 1 0
chr12:56160043|56160320 hsa-miR-152-5p 0 1 0
chr12:56160043|56160320 hsa-miR-6879-3p 1 0 0
chr12:56160043|56160320 hsa-miR-6809-5p 0 1 0
chr12:56160043|56160320 hsa-miR-6894-5p 1 0 0
chr12:56160043|56160320 hsa-miR-766-5p 1 1 0
chr12:56160043|56160320 hsa-miR-6880-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6744-5p 0 1 0
chr12:56160043|56160320 hsa-miR-6746-5p 1 0 0
chr12:56160043|56160320 hsa-miR-4722-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6741-5p 0 1 0
chr12:56160043|56160320 hsa-miR-6727-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6806-5p 1 0 0
chr12:56160043|56160320 hsa-miR-3682-3p 1 1 0
chr12:56160043|56160320 hsa-miR-3605-5p 1 0 0
chr12:56160043|56160320 hsa-miR-23a-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6760-5p 1 1 0
chr12:56160043|56160320 hsa-miR-6888-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6810-5p 1 0 0
chr12:56160043|56160320 hsa-miR-5006-5p 1 0 0
chr12:56160043|56160320 hsa-miR-1229-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6784-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6753-5p 1 1 0
chr12:56160043|56160320 hsa-miR-3127-5p 1 0 0
chr12:56160043|56160320 hsa-miR-1908-5p 1 0 0
chr12:56160043|56160320 hsa-miR-877-5p 1 0 0
chr12:56160043|56160320 hsa-miR-4732-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6847-5p 1 1 0
chr12:56160043|56160320 hsa-miR-3160-3p 0 1 0
chr12:56160043|56160320 hsa-miR-193a-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6830-5p 0 1 0
chr12:56160043|56160320 hsa-miR-6886-5p 1 0 0
chr12:56160043|56160320 hsa-miR-2355-3p 0 1 0
chr12:56160043|56160320 hsa-miR-744-5p 1 0 0
chr12:56160043|56160320 hsa-miR-1285-5p 0 1 0
chr12:56160043|56160320 hsa-miR-3177-3p 1 0 0
chr12:56160043|56160320 hsa-miR-652-3p 1 1 0
chr12:56160043|56160320 hsa-miR-10400-5p 1 0 0
chr12:56160043|56160320 hsa-miR-1233-5p 1 0 0
chr12:56160043|56160320 hsa-miR-4763-3p 1 1 0
chr12:56160043|56160320 hsa-miR-6778-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6865-5p 1 1 0
chr12:56160043|56160320 hsa-miR-6775-5p 1 1 0
chr12:56160043|56160320 hsa-miR-6774-5p 0 1 0
chr12:56160043|56160320 hsa-miR-6780a-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6808-5p 1 0 0
chr12:56160043|56160320 hsa-miR-1915-3p 1 0 0
chr12:56160043|56160320 hsa-miR-5189-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6780b-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6836-5p 1 1 0
chr12:56160043|56160320 hsa-miR-6862-5p 0 1 0
chr12:56160043|56160320 hsa-miR-10396b-5p 1 0 0
chr12:56160043|56160320 hsa-miR-1237-5p 1 0 0
chr12:56160043|56160320 hsa-miR-328-5p 1 0 0
chr12:56160043|56160320 hsa-miR-4632-5p 1 1 0
chr12:56160043|56160320 hsa-miR-4685-5p 1 1 0
chr12:56160043|56160320 hsa-miR-6729-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6735-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6858-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6831-5p 0 1 0
chr12:56160043|56160320 hsa-miR-6511a-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6856-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6736-5p 1 0 0
chr12:56160043|56160320 hsa-miR-3679-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6876-5p 0 1 0
chr12:56160043|56160320 hsa-miR-6785-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6862-3p 1 0 0
chr12:56160043|56160320 hsa-miR-6837-5p 1 0 0
chr12:56160043|56160320 hsa-miR-6859-5p 1 0 0
chr12:56160043|56160320 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:56160043|56160320
ORF Type ORF1
Protein Length 73
Nucleotide Length 222
Protein Sequence MPPASLLLPLSSSHLQGERKHFWNWVTSEVPQGAISAQGQGHRTLPSVTRTCRISAPMTVPFPSLSNTRSPST
Nucleotide Sequence CTGCCACCAGCATCTCTACTTCTTCCTCTGTCATCTTCTCACCTGCAGGGGGAAAGAAAGCATTTTTGGAATTGGGTGACAAGTGAGGTACCTCAGGGTGCCATCTCAGCTCAAGGACAAGGACACAGAACCTTACCCAGTGTGACAAGAACATGCCGGATTTCAGCACCCATGACGGTGCCATTTCCTTCCTTGTCAAACACCCGAAGTCCTTCGACATAA
CircID chr12:56160043|56160320
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MPCHQHLYFFLCHLLTCRGKESIFGIG
Nucleotide Sequence ATGCCCTGCCACCAGCATCTCTACTTCTTCCTCTGTCATCTTCTCACCTGCAGGGGGAAAGAAAGCATTTTTGGAATTGGGTGA
CircID chr12:56160043|56160320
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MIQPLLSSCPATSISTSSSVIFSPAGGKKAFLELGDK
Nucleotide Sequence TTGATACAACCATTGCTGTCCTCATGCCCTGCCACCAGCATCTCTACTTCTTCCTCTGTCATCTTCTCACCTGCAGGGGGAAAGAAAGCATTTTTGGAATTGGGTGACAAGTGA
CircID chr12:56160043|56160320
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MPDFSTHDGAISFLVKHPKSFDIILIGALV
Nucleotide Sequence ATGCCGGATTTCAGCACCCATGACGGTGCCATTTCCTTCCTTGTCAAACACCCGAAGTCCTTCGACATAATCCTCATAGGTGCCCTGGTC
CircID chr12:56160043|56160320
ORF Type ORF5
Protein Length 88
Nucleotide Length 264
Protein Sequence MRIMSKDFGCLTRKEMAPSWVLKSGMFLSHWVRFCVLVLELRWHPEVPHLSPNSKNAFFPPAGEKMTEEEVEMLVAGHEDSNGCINYE
Nucleotide Sequence ATGAGGATTATGTCGAAGGACTTCGGGTGTTTGACAAGGAAGGAAATGGCACCGTCATGGGTGCTGAAATCCGGCATGTTCTTGTCACACTGGGTAAGGTTCTGTGTCCTTGTCCTTGAGCTGAGATGGCACCCTGAGGTACCTCACTTGTCACCCAATTCCAAAAATGCTTTCTTTCCCCCTGCAGGTGAGAAGATGACAGAGGAAGAAGTAGAGATGCTGGTGGCAGGGCATGAGGACAGCAATGGTTGTATCAACTATGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab