CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56169640|56169836
Strand -
CircType exon
Host Gene ENSG00000139613.10;
Algorism CIRI2;
Sequence TTCCTTCAGCACTTCCTCCTGCCCTTCCTTTGGCTCCTTCTCCTTCTCAGGATCGACTGGGCCAGGACAAGGGTTGAGTTAGCCCCACAGCTTCACCTCTGTCCTGCACCCCCACCTACCCTTGTGGGAGGCTCACCTATTGGGTCTCCATCACTCTTCTCGGACTCCTTCTCACTGTCGCCTTCTTTCCCTTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56169640|56169836 hsa-miR-302a-5p 0 0 1
chr12:56169640|56169836 hsa-miR-302a-3p 0 0 1
chr12:56169640|56169836 hsa-miR-302b-5p 0 0 1
chr12:56169640|56169836 hsa-miR-302b-3p 0 0 1
chr12:56169640|56169836 hsa-miR-302c-5p 0 0 1
chr12:56169640|56169836 hsa-miR-302c-3p 0 0 1
chr12:56169640|56169836 hsa-miR-302d-5p 0 0 1
chr12:56169640|56169836 hsa-miR-302d-3p 0 0 1
chr12:56169640|56169836 hsa-miR-372-5p 0 0 1
chr12:56169640|56169836 hsa-miR-372-3p 0 0 1
chr12:56169640|56169836 hsa-miR-373-5p 0 0 1
chr12:56169640|56169836 hsa-miR-373-3p 0 0 1
chr12:56169640|56169836 hsa-miR-520e-5p 0 0 1
chr12:56169640|56169836 hsa-miR-520e-3p 0 0 1
chr12:56169640|56169836 hsa-miR-520b-5p 0 0 1
chr12:56169640|56169836 hsa-miR-520b-3p 0 0 1
chr12:56169640|56169836 hsa-miR-1200 0 0 1
chr12:56169640|56169836 hsa-miR-1286 0 1 1
chr12:56169640|56169836 hsa-miR-1253 0 0 1
chr12:56169640|56169836 hsa-miR-302e 0 0 1
chr12:56169640|56169836 hsa-miR-1252-5p 0 0 1
chr12:56169640|56169836 hsa-miR-1252-3p 0 0 1
chr12:56169640|56169836 hsa-miR-127-5p 0 1 1
chr12:56169640|56169836 hsa-miR-512-3p 0 0 1
chr12:56169640|56169836 hsa-miR-491-5p 0 0 1
chr12:56169640|56169836 hsa-miR-532-3p 0 0 1
chr12:56169640|56169836 hsa-miR-1289 0 1 1
chr12:56169640|56169836 hsa-miR-188-3p 0 0 1
chr12:56169640|56169836 hsa-miR-342-5p 0 0 1
chr12:56169640|56169836 hsa-miR-520d-3p 0 0 1
chr12:56169640|56169836 hsa-miR-520a-3p 0 0 1
chr12:56169640|56169836 hsa-miR-520c-3p 0 0 1
chr12:56169640|56169836 hsa-miR-1300 0 0 1
chr12:56169640|56169836 hsa-miR-1273 0 0 1
chr12:56169640|56169836 hsa-miR-765 1 0 0
chr12:56169640|56169836 hsa-miR-663b 0 1 0
chr12:56169640|56169836 hsa-miR-2110 1 0 0
chr12:56169640|56169836 hsa-miR-3141 1 0 0
chr12:56169640|56169836 hsa-miR-3153 1 1 0
chr12:56169640|56169836 hsa-miR-3154 1 1 0
chr12:56169640|56169836 hsa-miR-3185 1 0 0
chr12:56169640|56169836 hsa-miR-4306 1 0 0
chr12:56169640|56169836 hsa-miR-4257 0 1 0
chr12:56169640|56169836 hsa-miR-4270 1 0 0
chr12:56169640|56169836 hsa-miR-4271 1 0 0
chr12:56169640|56169836 hsa-miR-4428 0 1 0
chr12:56169640|56169836 hsa-miR-4436a 0 1 0
chr12:56169640|56169836 hsa-miR-4476 1 0 0
chr12:56169640|56169836 hsa-miR-2392 1 0 0
chr12:56169640|56169836 hsa-miR-4510 1 0 0
chr12:56169640|56169836 hsa-miR-4516 1 1 0
chr12:56169640|56169836 hsa-miR-4533 1 0 0
chr12:56169640|56169836 hsa-miR-4644 1 0 0
chr12:56169640|56169836 hsa-miR-4651 1 0 0
chr12:56169640|56169836 hsa-miR-4688 1 0 0
chr12:56169640|56169836 hsa-miR-4689 1 0 0
chr12:56169640|56169836 hsa-miR-4739 1 1 0
chr12:56169640|56169836 hsa-miR-5093 1 0 0
chr12:56169640|56169836 hsa-miR-5572 1 0 0
chr12:56169640|56169836 hsa-miR-5739 1 0 0
chr12:56169640|56169836 hsa-miR-6076 1 0 0
chr12:56169640|56169836 hsa-miR-6088 1 0 0
chr12:56169640|56169836 hsa-miR-6090 1 0 0
chr12:56169640|56169836 hsa-miR-6124 1 0 0
chr12:56169640|56169836 hsa-miR-6127 1 0 0
chr12:56169640|56169836 hsa-miR-6132 1 0 0
chr12:56169640|56169836 hsa-miR-6133 1 0 0
chr12:56169640|56169836 hsa-miR-6165 1 0 0
chr12:56169640|56169836 hsa-miR-6860 1 0 0
chr12:56169640|56169836 hsa-miR-7515 1 0 0
chr12:56169640|56169836 hsa-miR-8085 1 1 0
chr12:56169640|56169836 hsa-miR-9500 1 0 0
chr12:56169640|56169836 hsa-miR-12114 0 1 0
chr12:56169640|56169836 hsa-miR-12115 1 0 0
chr12:56169640|56169836 hsa-miR-4433b-3p 1 0 0
chr12:56169640|56169836 hsa-miR-504-3p 1 0 0
chr12:56169640|56169836 hsa-miR-6747-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6765-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6861-5p 1 0 0
chr12:56169640|56169836 hsa-miR-125a-3p 0 1 0
chr12:56169640|56169836 hsa-miR-6510-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6728-5p 1 0 0
chr12:56169640|56169836 hsa-miR-766-5p 0 1 0
chr12:56169640|56169836 hsa-miR-1236-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6757-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6873-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6880-5p 1 0 0
chr12:56169640|56169836 hsa-miR-7847-3p 1 0 0
chr12:56169640|56169836 hsa-miR-4695-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6746-5p 1 0 0
chr12:56169640|56169836 hsa-miR-4722-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6730-5p 1 0 0
chr12:56169640|56169836 hsa-miR-7154-3p 1 0 0
chr12:56169640|56169836 hsa-miR-505-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6820-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6721-5p 1 1 0
chr12:56169640|56169836 hsa-miR-7845-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6772-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6796-5p 0 1 0
chr12:56169640|56169836 hsa-miR-6827-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6770-5p 0 1 0
chr12:56169640|56169836 hsa-miR-3126-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6760-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6881-5p 1 0 0
chr12:56169640|56169836 hsa-miR-2467-3p 1 0 0
chr12:56169640|56169836 hsa-miR-6850-5p 1 0 0
chr12:56169640|56169836 hsa-miR-185-5p 1 0 0
chr12:56169640|56169836 hsa-miR-204-3p 1 1 0
chr12:56169640|56169836 hsa-miR-1229-5p 1 0 0
chr12:56169640|56169836 hsa-miR-1228-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6749-5p 1 0 0
chr12:56169640|56169836 hsa-miR-3202 1 1 0
chr12:56169640|56169836 hsa-miR-7854-3p 0 1 0
chr12:56169640|56169836 hsa-miR-149-3p 1 0 0
chr12:56169640|56169836 hsa-miR-3162-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6800-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6802-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6781-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6878-5p 1 0 0
chr12:56169640|56169836 hsa-miR-7112-5p 1 0 0
chr12:56169640|56169836 hsa-miR-423-5p 1 0 0
chr12:56169640|56169836 hsa-miR-5000-3p 0 1 0
chr12:56169640|56169836 hsa-miR-2114-3p 1 1 0
chr12:56169640|56169836 hsa-miR-6780b-3p 0 1 0
chr12:56169640|56169836 hsa-miR-1207-5p 1 0 0
chr12:56169640|56169836 hsa-miR-4763-3p 1 1 0
chr12:56169640|56169836 hsa-miR-6769b-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6743-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6752-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6756-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6803-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6815-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6851-5p 1 0 0
chr12:56169640|56169836 hsa-miR-7110-5p 1 1 0
chr12:56169640|56169836 hsa-miR-11181-3p 1 0 0
chr12:56169640|56169836 hsa-miR-6722-3p 1 0 0
chr12:56169640|56169836 hsa-miR-6751-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6788-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6797-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6875-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6879-5p 1 1 0
chr12:56169640|56169836 hsa-miR-4728-5p 1 0 0
chr12:56169640|56169836 hsa-miR-5196-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6780b-5p 1 1 0
chr12:56169640|56169836 hsa-miR-10526-3p 1 0 0
chr12:56169640|56169836 hsa-miR-328-5p 1 0 0
chr12:56169640|56169836 hsa-miR-4632-5p 1 1 0
chr12:56169640|56169836 hsa-miR-4725-3p 1 1 0
chr12:56169640|56169836 hsa-miR-6735-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6858-5p 1 1 0
chr12:56169640|56169836 hsa-miR-4436b-3p 1 1 0
chr12:56169640|56169836 hsa-miR-6831-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6845-5p 1 0 0
chr12:56169640|56169836 hsa-miR-1238-5p 1 0 0
chr12:56169640|56169836 hsa-miR-4758-5p 1 0 0
chr12:56169640|56169836 hsa-miR-4769-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6511b-5p 1 1 0
chr12:56169640|56169836 hsa-miR-3198 1 0 0
chr12:56169640|56169836 hsa-miR-6731-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6739-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6758-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6856-5p 1 0 0
chr12:56169640|56169836 hsa-miR-7843-5p 1 0 0
chr12:56169640|56169836 hsa-miR-3173-3p 1 0 0
chr12:56169640|56169836 hsa-miR-4646-5p 1 1 0
chr12:56169640|56169836 hsa-miR-4747-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6876-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6891-5p 1 1 0
chr12:56169640|56169836 hsa-miR-6750-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6785-5p 1 0 0
chr12:56169640|56169836 hsa-miR-4667-5p 0 1 0
chr12:56169640|56169836 hsa-miR-6762-5p 1 0 0
chr12:56169640|56169836 hsa-miR-6884-5p 1 0 0
chr12:56169640|56169836 hsa-miR-10395-5p 0 1 0
chr12:56169640|56169836 hsa-miR-6733-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:56169640|56169836
ORF Type ORF1
Protein Length 59
Nucleotide Length 177
Protein Sequence MPFLWLLLLLRIDWARTRVELAPQLHLCPAPPPTLVGGSPIGSPSLFSDSFSLSPSFPF
Nucleotide Sequence CTGCCCTTCCTTTGGCTCCTTCTCCTTCTCAGGATCGACTGGGCCAGGACAAGGGTTGAGTTAGCCCCACAGCTTCACCTCTGTCCTGCACCCCCACCTACCCTTGTGGGAGGCTCACCTATTGGGTCTCCATCACTCTTCTCGGACTCCTTCTCACTGTCGCCTTCTTTCCCTTTC
CircID chr12:56169640|56169836
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MHPHLPLWEAHLLGLHHSSRTPSHCRLLSLS
Nucleotide Sequence CTGCACCCCCACCTACCCTTGTGGGAGGCTCACCTATTGGGTCTCCATCACTCTTCTCGGACTCCTTCTCACTGTCGCCTTCTTTCCCTTTCT
CircID chr12:56169640|56169836
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MSCTPTYPCGRLTYWVSITLLGLLLTVAFFPFL
Nucleotide Sequence CTGTCCTGCACCCCCACCTACCCTTGTGGGAGGCTCACCTATTGGGTCTCCATCACTCTTCTCGGACTCCTTCTCACTGTCGCCTTCTTTCCCTTTCTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab