CircRNA Information

General Information
circRNA Basic Information
CircID chr12:562188|562400
Strand +
CircType exon
Host Gene ENSG00000139044.9;
Algorism CIRI2;
Sequence TTCCCTTTTCGTCCCTTTCTGTCCAGCCCCCACCCGCTTCTTGCCTAAGGAAATTGACAGATATGTCCACATCCTCTTTACCTCTTCTCCATGTCCTCTCGGGAGGCCTTACCCACAGGCACGCCGGTAAGGGAAAGGGCTTCTCTCCCCTGCCTTCATCACCCTGCCTGTTCTGCAGGCCTCAATGTCCAGTGCCAGGGAGTGGCAAGCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:562188|562400 hsa-miR-31-5p 0 0 1
chr12:562188|562400 hsa-miR-31-3p 0 0 1
chr12:562188|562400 hsa-miR-204-5p 0 0 1
chr12:562188|562400 hsa-miR-204-3p 0 0 1
chr12:562188|562400 hsa-miR-211-5p 0 0 1
chr12:562188|562400 hsa-miR-211-3p 0 0 1
chr12:562188|562400 hsa-miR-185-5p 0 0 1
chr12:562188|562400 hsa-miR-185-3p 0 0 1
chr12:562188|562400 hsa-miR-555 0 0 1
chr12:562188|562400 hsa-miR-583 0 0 1
chr12:562188|562400 hsa-miR-623 1 0 1
chr12:562188|562400 hsa-miR-298 1 0 1
chr12:562188|562400 hsa-miR-940 0 1 1
chr12:562188|562400 hsa-miR-1304-5p 0 0 1
chr12:562188|562400 hsa-miR-1304-3p 0 0 1
chr12:562188|562400 hsa-miR-1253 0 0 1
chr12:562188|562400 hsa-miR-1265 0 1 1
chr12:562188|562400 hsa-miR-1276 0 0 1
chr12:562188|562400 hsa-miR-1207-5p 1 1 1
chr12:562188|562400 hsa-miR-550 0 0 1
chr12:562188|562400 hsa-miR-129-3p 0 0 1
chr12:562188|562400 hsa-miR-886-3p 0 0 1
chr12:562188|562400 hsa-miR-184 1 0 0
chr12:562188|562400 hsa-miR-422a 1 0 0
chr12:562188|562400 hsa-miR-637 1 0 0
chr12:562188|562400 hsa-miR-663a 1 0 0
chr12:562188|562400 hsa-miR-762 1 1 0
chr12:562188|562400 hsa-miR-765 1 0 0
chr12:562188|562400 hsa-miR-1270 1 0 0
chr12:562188|562400 hsa-miR-2861 1 0 0
chr12:562188|562400 hsa-miR-3125 1 0 0
chr12:562188|562400 hsa-miR-3138 1 1 0
chr12:562188|562400 hsa-miR-3147 1 0 0
chr12:562188|562400 hsa-miR-3154 1 0 0
chr12:562188|562400 hsa-miR-3175 0 1 0
chr12:562188|562400 hsa-miR-378c 1 0 0
chr12:562188|562400 hsa-miR-4298 1 0 0
chr12:562188|562400 hsa-miR-4300 1 0 0
chr12:562188|562400 hsa-miR-4322 1 0 0
chr12:562188|562400 hsa-miR-4253 1 0 0
chr12:562188|562400 hsa-miR-4271 1 0 0
chr12:562188|562400 hsa-miR-3621 1 0 0
chr12:562188|562400 hsa-miR-3652 1 0 0
chr12:562188|562400 hsa-miR-3654 0 1 0
chr12:562188|562400 hsa-miR-1268b 1 0 0
chr12:562188|562400 hsa-miR-4430 1 1 0
chr12:562188|562400 hsa-miR-4436a 0 1 0
chr12:562188|562400 hsa-miR-4447 1 1 0
chr12:562188|562400 hsa-miR-4458 1 0 0
chr12:562188|562400 hsa-miR-4462 1 0 0
chr12:562188|562400 hsa-miR-4466 1 0 0
chr12:562188|562400 hsa-miR-4484 1 0 0
chr12:562188|562400 hsa-miR-4488 1 0 0
chr12:562188|562400 hsa-miR-4489 1 0 0
chr12:562188|562400 hsa-miR-4492 1 0 0
chr12:562188|562400 hsa-miR-4498 1 1 0
chr12:562188|562400 hsa-miR-4505 1 0 0
chr12:562188|562400 hsa-miR-4507 1 0 0
chr12:562188|562400 hsa-miR-4508 1 0 0
chr12:562188|562400 hsa-miR-4514 1 1 0
chr12:562188|562400 hsa-miR-4516 1 1 0
chr12:562188|562400 hsa-miR-4534 0 1 0
chr12:562188|562400 hsa-miR-378i 1 0 0
chr12:562188|562400 hsa-miR-1587 1 0 0
chr12:562188|562400 hsa-miR-4651 1 0 0
chr12:562188|562400 hsa-miR-4656 1 0 0
chr12:562188|562400 hsa-miR-4657 1 1 0
chr12:562188|562400 hsa-miR-4692 0 1 0
chr12:562188|562400 hsa-miR-4739 1 0 0
chr12:562188|562400 hsa-miR-4741 1 0 0
chr12:562188|562400 hsa-miR-5090 1 0 0
chr12:562188|562400 hsa-miR-5787 1 0 0
chr12:562188|562400 hsa-miR-6085 1 0 0
chr12:562188|562400 hsa-miR-6124 1 0 0
chr12:562188|562400 hsa-miR-6126 0 1 0
chr12:562188|562400 hsa-miR-6131 1 0 0
chr12:562188|562400 hsa-miR-6860 1 0 0
chr12:562188|562400 hsa-miR-6863 1 0 0
chr12:562188|562400 hsa-miR-7150 1 0 0
chr12:562188|562400 hsa-miR-7704 1 0 0
chr12:562188|562400 hsa-miR-8060 1 1 0
chr12:562188|562400 hsa-miR-8072 1 0 0
chr12:562188|562400 hsa-miR-8085 1 1 0
chr12:562188|562400 hsa-miR-12120 1 0 0
chr12:562188|562400 hsa-miR-4433b-3p 1 0 0
chr12:562188|562400 hsa-miR-1247-3p 1 0 0
chr12:562188|562400 hsa-miR-6809-5p 1 0 0
chr12:562188|562400 hsa-miR-1287-5p 1 0 0
chr12:562188|562400 hsa-miR-6765-5p 1 0 0
chr12:562188|562400 hsa-miR-215-3p 0 1 0
chr12:562188|562400 hsa-miR-7106-5p 1 0 0
chr12:562188|562400 hsa-miR-6857-5p 1 0 0
chr12:562188|562400 hsa-miR-6510-5p 1 1 0
chr12:562188|562400 hsa-miR-6089 1 0 0
chr12:562188|562400 hsa-miR-6880-5p 1 0 0
chr12:562188|562400 hsa-miR-7154-3p 1 0 0
chr12:562188|562400 hsa-miR-6741-5p 1 0 0
chr12:562188|562400 hsa-miR-3622b-5p 1 0 0
chr12:562188|562400 hsa-miR-6759-5p 1 0 0
chr12:562188|562400 hsa-miR-6742-5p 1 0 0
chr12:562188|562400 hsa-miR-6716-5p 1 0 0
chr12:562188|562400 hsa-miR-3151-5p 1 0 0
chr12:562188|562400 hsa-miR-6748-5p 1 0 0
chr12:562188|562400 hsa-miR-6829-5p 1 0 0
chr12:562188|562400 hsa-miR-6732-5p 1 0 0
chr12:562188|562400 hsa-miR-6881-5p 1 0 0
chr12:562188|562400 hsa-miR-6810-5p 1 0 0
chr12:562188|562400 hsa-miR-6786-5p 1 0 0
chr12:562188|562400 hsa-miR-6835-5p 1 0 0
chr12:562188|562400 hsa-miR-1226-5p 1 0 0
chr12:562188|562400 hsa-miR-1229-5p 1 0 0
chr12:562188|562400 hsa-miR-4764-5p 0 1 0
chr12:562188|562400 hsa-miR-1228-5p 1 0 0
chr12:562188|562400 hsa-miR-296-3p 1 0 0
chr12:562188|562400 hsa-let-7b-5p 1 0 0
chr12:562188|562400 hsa-miR-6749-5p 1 0 0
chr12:562188|562400 hsa-miR-6847-5p 1 0 0
chr12:562188|562400 hsa-miR-4446-3p 1 0 0
chr12:562188|562400 hsa-miR-202-3p 1 0 0
chr12:562188|562400 hsa-miR-6824-5p 1 0 0
chr12:562188|562400 hsa-miR-6802-5p 1 0 0
chr12:562188|562400 hsa-miR-3158-5p 1 1 0
chr12:562188|562400 hsa-miR-6781-5p 1 0 0
chr12:562188|562400 hsa-miR-5010-5p 1 0 0
chr12:562188|562400 hsa-miR-3189-3p 1 0 0
chr12:562188|562400 hsa-miR-4652-5p 1 0 0
chr12:562188|562400 hsa-miR-6720-3p 1 0 0
chr12:562188|562400 hsa-miR-4773 0 1 0
chr12:562188|562400 hsa-miR-4520-2-3p 1 0 0
chr12:562188|562400 hsa-miR-221-5p 0 1 0
chr12:562188|562400 hsa-miR-4520-3p 1 1 0
chr12:562188|562400 hsa-miR-4740-3p 1 1 0
chr12:562188|562400 hsa-miR-1233-5p 1 0 0
chr12:562188|562400 hsa-miR-4763-3p 1 1 0
chr12:562188|562400 hsa-miR-6769b-5p 1 0 0
chr12:562188|562400 hsa-miR-6778-5p 1 0 0
chr12:562188|562400 hsa-miR-6787-5p 1 0 0
chr12:562188|562400 hsa-miR-6816-5p 1 0 0
chr12:562188|562400 hsa-miR-6893-5p 1 1 0
chr12:562188|562400 hsa-miR-5001-5p 1 1 0
chr12:562188|562400 hsa-miR-6726-5p 1 0 0
chr12:562188|562400 hsa-miR-6754-5p 1 0 0
chr12:562188|562400 hsa-miR-6756-5p 1 1 0
chr12:562188|562400 hsa-miR-6769a-5p 1 0 0
chr12:562188|562400 hsa-miR-6803-5p 1 0 0
chr12:562188|562400 hsa-miR-6813-5p 1 0 0
chr12:562188|562400 hsa-miR-6851-5p 1 0 0
chr12:562188|562400 hsa-miR-11181-3p 1 0 0
chr12:562188|562400 hsa-miR-6774-5p 1 0 0
chr12:562188|562400 hsa-miR-6779-5p 1 0 0
chr12:562188|562400 hsa-miR-6797-5p 1 0 0
chr12:562188|562400 hsa-miR-6808-5p 1 1 0
chr12:562188|562400 hsa-miR-6879-5p 1 0 0
chr12:562188|562400 hsa-miR-4755-5p 0 1 0
chr12:562188|562400 hsa-miR-3620-5p 1 0 0
chr12:562188|562400 hsa-miR-4728-5p 1 0 0
chr12:562188|562400 hsa-miR-5189-5p 1 1 0
chr12:562188|562400 hsa-miR-6862-5p 1 0 0
chr12:562188|562400 hsa-miR-1237-5p 1 0 0
chr12:562188|562400 hsa-miR-1909-3p 0 1 0
chr12:562188|562400 hsa-miR-4745-5p 1 0 0
chr12:562188|562400 hsa-miR-6735-5p 1 0 0
chr12:562188|562400 hsa-miR-6846-5p 1 1 0
chr12:562188|562400 hsa-miR-6848-5p 1 1 0
chr12:562188|562400 hsa-miR-3187-5p 1 0 0
chr12:562188|562400 hsa-miR-4436b-3p 1 0 0
chr12:562188|562400 hsa-miR-4697-5p 1 0 0
chr12:562188|562400 hsa-miR-4758-5p 1 0 0
chr12:562188|562400 hsa-miR-6511a-5p 1 0 0
chr12:562188|562400 hsa-miR-3940-5p 1 0 0
chr12:562188|562400 hsa-miR-6856-5p 1 0 0
chr12:562188|562400 hsa-miR-6736-5p 1 0 0
chr12:562188|562400 hsa-miR-6855-5p 1 0 0
chr12:562188|562400 hsa-miR-3679-5p 1 1 0
chr12:562188|562400 hsa-miR-4646-5p 1 0 0
chr12:562188|562400 hsa-miR-6891-5p 1 0 0
chr12:562188|562400 hsa-miR-541-3p 1 0 0
chr12:562188|562400 hsa-miR-6766-5p 1 0 0
chr12:562188|562400 hsa-miR-6849-5p 1 0 0
chr12:562188|562400 hsa-miR-6791-5p 1 0 0
chr12:562188|562400 hsa-miR-550a-3-5p 0 1 0
chr12:562188|562400 hsa-miR-550a-5p 0 1 0
chr12:562188|562400 hsa-miR-6762-5p 1 0 0
chr12:562188|562400 hsa-miR-5581-5p 1 1 0
chr12:562188|562400 hsa-miR-6859-5p 1 0 0
chr12:562188|562400 hsa-miR-5006-3p 0 1 0
chr12:562188|562400 hsa-miR-129-1-3p 0 1 0
chr12:562188|562400 hsa-miR-129-2-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:562188|562400
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MSSREALPTGTPVRERASLPCLHHPACSAGLNVQCQGVASP
Nucleotide Sequence ATGTCCTCTCGGGAGGCCTTACCCACAGGCACGCCGGTAAGGGAAAGGGCTTCTCTCCCCTGCCTTCATCACCCTGCCTGTTCTGCAGGCCTCAATGTCCAGTGCCAGGGAGTGGCAAGCCCC
CircID chr12:562188|562400
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MPKEIDRYVHILFTSSPCPLGRPYPQARR
Nucleotide Sequence TTGCCTAAGGAAATTGACAGATATGTCCACATCCTCTTTACCTCTTCTCCATGTCCTCTCGGGAGGCCTTACCCACAGGCACGCCGGTAA
CircID chr12:562188|562400
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MTDMSTSSLPLLHVLSGGLTHRHAGKGKGFSPLPSSPCLFCRPQCPVPGSGKP
Nucleotide Sequence TTGACAGATATGTCCACATCCTCTTTACCTCTTCTCCATGTCCTCTCGGGAGGCCTTACCCACAGGCACGCCGGTAAGGGAAAGGGCTTCTCTCCCCTGCCTTCATCACCCTGCCTGTTCTGCAGGCCTCAATGTCCAGTGCCAGGGAGTGGCAAGCCC
CircID chr12:562188|562400
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MALDIEACRTGRVMKAGERSPFPYRRACG
Nucleotide Sequence CTGGCACTGGACATTGAGGCCTGCAGAACAGGCAGGGTGATGAAGGCAGGGGAGAGAAGCCCTTTCCCTTACCGGCGTGCCTGTGGGTAA
CircID chr12:562188|562400
ORF Type ORF5
Protein Length 59
Nucleotide Length 177
Protein Sequence MQNRQGDEGRGEKPFPLPACLWVRPPERTWRRGKEDVDISVNFLRQEAGGGWTERDEKG
Nucleotide Sequence CTGCAGAACAGGCAGGGTGATGAAGGCAGGGGAGAGAAGCCCTTTCCCTTACCGGCGTGCCTGTGGGTAAGGCCTCCCGAGAGGACATGGAGAAGAGGTAAAGAGGATGTGGACATATCTGTCAATTTCCTTAGGCAAGAAGCGGGTGGGGGCTGGACAGAAAGGGACGAAAAGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab