CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56236671|56236982
Strand -
CircType exon
Host Gene ENSG00000139540.10;
Algorism CIRI2;
Sequence CAGGGTGGCACTGATATCACGTGGATGGTCCTCCTGGGAGATGGTCTACACAACCTCACTGATGGGCTGGCCATAGGTGTGAGGGGTGGGAACGGAGGGAAGCAGGTCCGAGGGGAGGCCAGGGCTCCTAGTTATCAGCTGGGGCTAGGAGAGGGCCGTCAGGAAGATGGGGAGAGGACGGGAGGACCACGGAACACAGGAACCTGCTTCTGAGGAGACTTTTCTTCTGGACTGACAACTTCCGACCCTGCTGGCCCCAGGTGCTGCCTTCTCTGATGGCTTCTCCAGCGGCCTCAGTACCACCTTAGCGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56236671|56236982 hsa-miR-18a-5p 0 0 1
chr12:56236671|56236982 hsa-miR-18a-3p 0 0 1
chr12:56236671|56236982 hsa-miR-198 0 1 1
chr12:56236671|56236982 hsa-miR-148a-5p 0 0 1
chr12:56236671|56236982 hsa-miR-148a-3p 0 0 1
chr12:56236671|56236982 hsa-miR-214-5p 0 0 1
chr12:56236671|56236982 hsa-miR-214-3p 0 0 1
chr12:56236671|56236982 hsa-miR-223-5p 0 0 1
chr12:56236671|56236982 hsa-miR-223-3p 0 0 1
chr12:56236671|56236982 hsa-miR-152-5p 0 0 1
chr12:56236671|56236982 hsa-miR-152-3p 0 0 1
chr12:56236671|56236982 hsa-miR-150-5p 0 0 1
chr12:56236671|56236982 hsa-miR-150-3p 0 0 1
chr12:56236671|56236982 hsa-miR-382-5p 0 0 1
chr12:56236671|56236982 hsa-miR-382-3p 0 0 1
chr12:56236671|56236982 hsa-miR-148b-5p 0 0 1
chr12:56236671|56236982 hsa-miR-148b-3p 0 0 1
chr12:56236671|56236982 hsa-miR-18b-5p 0 0 1
chr12:56236671|56236982 hsa-miR-18b-3p 0 0 1
chr12:56236671|56236982 hsa-miR-492 0 0 1
chr12:56236671|56236982 hsa-miR-657 0 0 1
chr12:56236671|56236982 hsa-miR-708-5p 0 0 1
chr12:56236671|56236982 hsa-miR-708-3p 0 0 1
chr12:56236671|56236982 hsa-miR-665 0 0 1
chr12:56236671|56236982 hsa-miR-1227-5p 0 0 1
chr12:56236671|56236982 hsa-miR-1227-3p 0 0 1
chr12:56236671|56236982 hsa-miR-1228-5p 0 0 1
chr12:56236671|56236982 hsa-miR-1228-3p 0 0 1
chr12:56236671|56236982 hsa-miR-1200 0 0 1
chr12:56236671|56236982 hsa-miR-1294 0 1 1
chr12:56236671|56236982 hsa-miR-1247-5p 0 0 1
chr12:56236671|56236982 hsa-miR-1247-3p 0 0 1
chr12:56236671|56236982 hsa-miR-532-3p 0 0 1
chr12:56236671|56236982 hsa-miR-1224-3p 0 0 1
chr12:56236671|56236982 hsa-miR-28-5p 0 0 1
chr12:56236671|56236982 hsa-miR-188-3p 0 0 1
chr12:56236671|56236982 hsa-miR-455-3p 0 0 1
chr12:56236671|56236982 hsa-miR-342-3p 0 0 1
chr12:56236671|56236982 hsa-miR-516a-3p 0 0 1
chr12:56236671|56236982 hsa-miR-1260 0 0 1
chr12:56236671|56236982 hsa-miR-1280 0 0 1
chr12:56236671|56236982 hsa-miR-1233 0 0 1
chr12:56236671|56236982 hsa-miR-886-5p 0 0 1
chr12:56236671|56236982 hsa-miR-642 0 0 1
chr12:56236671|56236982 hsa-miR-220a 0 0 1
chr12:56236671|56236982 hsa-miR-346 1 0 0
chr12:56236671|56236982 hsa-miR-572 1 0 0
chr12:56236671|56236982 hsa-miR-650 1 0 0
chr12:56236671|56236982 hsa-miR-761 0 1 0
chr12:56236671|56236982 hsa-miR-298 1 0 0
chr12:56236671|56236982 hsa-miR-940 1 0 0
chr12:56236671|56236982 hsa-miR-1260a 0 1 0
chr12:56236671|56236982 hsa-miR-1470 1 1 0
chr12:56236671|56236982 hsa-miR-2861 1 0 0
chr12:56236671|56236982 hsa-miR-1260b 0 1 0
chr12:56236671|56236982 hsa-miR-3196 1 0 0
chr12:56236671|56236982 hsa-miR-3615 1 0 0
chr12:56236671|56236982 hsa-miR-3714 0 1 0
chr12:56236671|56236982 hsa-miR-3689e 0 1 0
chr12:56236671|56236982 hsa-miR-3689f 0 1 0
chr12:56236671|56236982 hsa-miR-4530 1 1 0
chr12:56236671|56236982 hsa-miR-4754 1 0 0
chr12:56236671|56236982 hsa-miR-5193 1 0 0
chr12:56236671|56236982 hsa-miR-5685 0 1 0
chr12:56236671|56236982 hsa-miR-5703 0 1 0
chr12:56236671|56236982 hsa-miR-5704 0 1 0
chr12:56236671|56236982 hsa-miR-5787 1 0 0
chr12:56236671|56236982 hsa-miR-6086 0 1 0
chr12:56236671|56236982 hsa-miR-8089 1 0 0
chr12:56236671|56236982 hsa-miR-9986 0 1 0
chr12:56236671|56236982 hsa-miR-370-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6749-3p 1 1 0
chr12:56236671|56236982 hsa-miR-128-1-5p 1 0 0
chr12:56236671|56236982 hsa-miR-6836-3p 1 1 0
chr12:56236671|56236982 hsa-miR-1233-3p 0 1 0
chr12:56236671|56236982 hsa-miR-6892-3p 1 1 0
chr12:56236671|56236982 hsa-miR-6089 1 1 0
chr12:56236671|56236982 hsa-miR-4695-5p 1 0 0
chr12:56236671|56236982 hsa-miR-4722-5p 0 1 0
chr12:56236671|56236982 hsa-miR-7154-3p 0 1 0
chr12:56236671|56236982 hsa-miR-6762-3p 1 0 0
chr12:56236671|56236982 hsa-miR-3189-5p 1 0 0
chr12:56236671|56236982 hsa-miR-7110-3p 0 1 0
chr12:56236671|56236982 hsa-miR-1915-5p 1 0 0
chr12:56236671|56236982 hsa-miR-6845-3p 1 1 0
chr12:56236671|56236982 hsa-miR-877-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6770-5p 0 1 0
chr12:56236671|56236982 hsa-miR-6765-3p 0 1 0
chr12:56236671|56236982 hsa-miR-3194-5p 0 1 0
chr12:56236671|56236982 hsa-miR-5008-5p 1 0 0
chr12:56236671|56236982 hsa-miR-1343-3p 1 0 0
chr12:56236671|56236982 hsa-miR-1226-5p 1 0 0
chr12:56236671|56236982 hsa-miR-6803-3p 1 0 0
chr12:56236671|56236982 hsa-miR-885-3p 1 0 0
chr12:56236671|56236982 hsa-miR-7113-3p 1 0 0
chr12:56236671|56236982 hsa-miR-3667-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6878-3p 1 1 0
chr12:56236671|56236982 hsa-miR-7111-3p 1 1 0
chr12:56236671|56236982 hsa-miR-4667-3p 1 0 0
chr12:56236671|56236982 hsa-miR-378a-5p 0 1 0
chr12:56236671|56236982 hsa-miR-1236-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6813-3p 1 0 0
chr12:56236671|56236982 hsa-miR-3619-3p 0 1 0
chr12:56236671|56236982 hsa-miR-6804-3p 1 0 0
chr12:56236671|56236982 hsa-miR-4664-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6887-3p 1 0 0
chr12:56236671|56236982 hsa-miR-2276-5p 1 0 0
chr12:56236671|56236982 hsa-miR-6741-3p 1 1 0
chr12:56236671|56236982 hsa-miR-3605-3p 0 1 0
chr12:56236671|56236982 hsa-miR-7848-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6826-3p 1 0 0
chr12:56236671|56236982 hsa-miR-5088-3p 1 1 0
chr12:56236671|56236982 hsa-miR-328-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6795-3p 1 1 0
chr12:56236671|56236982 hsa-miR-3200-5p 1 0 0
chr12:56236671|56236982 hsa-miR-668-5p 1 0 0
chr12:56236671|56236982 hsa-miR-6880-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6802-3p 1 1 0
chr12:56236671|56236982 hsa-miR-6748-3p 1 0 0
chr12:56236671|56236982 hsa-miR-4433a-5p 1 1 0
chr12:56236671|56236982 hsa-miR-6779-3p 0 1 0
chr12:56236671|56236982 hsa-miR-6734-3p 1 1 0
chr12:56236671|56236982 hsa-miR-6800-3p 1 0 0
chr12:56236671|56236982 hsa-miR-3162-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6502-3p 0 1 0
chr12:56236671|56236982 hsa-miR-6812-5p 1 0 0
chr12:56236671|56236982 hsa-miR-6815-5p 1 0 0
chr12:56236671|56236982 hsa-miR-6851-5p 1 1 0
chr12:56236671|56236982 hsa-miR-6722-3p 1 0 0
chr12:56236671|56236982 hsa-miR-4685-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6852-3p 0 1 0
chr12:56236671|56236982 hsa-miR-449c-5p 1 0 0
chr12:56236671|56236982 hsa-miR-4632-5p 1 0 0
chr12:56236671|56236982 hsa-miR-4725-3p 1 0 0
chr12:56236671|56236982 hsa-miR-4726-5p 1 1 0
chr12:56236671|56236982 hsa-miR-6858-5p 1 0 0
chr12:56236671|56236982 hsa-miR-4723-5p 0 1 0
chr12:56236671|56236982 hsa-miR-6511a-5p 1 0 0
chr12:56236671|56236982 hsa-miR-3085-5p 1 0 0
chr12:56236671|56236982 hsa-miR-5008-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6877-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6791-5p 1 0 0
chr12:56236671|56236982 hsa-miR-6893-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6784-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6829-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6775-3p 1 1 0
chr12:56236671|56236982 hsa-miR-10392-3p 1 0 0
chr12:56236671|56236982 hsa-miR-4723-3p 1 0 0
chr12:56236671|56236982 hsa-miR-6769b-3p 1 0 0
chr12:56236671|56236982 hsa-miR-4701-5p 1 0 0
chr12:56236671|56236982 hsa-miR-6744-3p 1 0 0
chr12:56236671|56236982 hsa-miR-487b-5p 1 0 0
chr12:56236671|56236982 hsa-miR-4690-3p 0 1 0
chr12:56236671|56236982 hsa-miR-6833-3p 1 1 0
chr12:56236671|56236982 hsa-miR-494-5p 1 0 0
chr12:56236671|56236982 hsa-miR-3922-3p 0 1 0
chr12:56236671|56236982 hsa-miR-3689a-5p 0 1 0
chr12:56236671|56236982 hsa-miR-3689b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:56236671|56236982
ORF Type ORF1
Protein Length 62
Nucleotide Length 189
Protein Sequence MVLLGDGLHNLTDGLAIGVRGGNGGKQVRGEARAPSYQLGLGEGRQEDGERTGGPRNTGTCF
Nucleotide Sequence ATGGTCCTCCTGGGAGATGGTCTACACAACCTCACTGATGGGCTGGCCATAGGTGTGAGGGGTGGGAACGGAGGGAAGCAGGTCCGAGGGGAGGCCAGGGCTCCTAGTTATCAGCTGGGGCTAGGAGAGGGCCGTCAGGAAGATGGGGAGAGGACGGGAGGACCACGGAACACAGGAACCTGCTTCTGA
CircID chr12:56236671|56236982
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MLLRRLFFWTDNFRPCWPQVLPSLMASPAASVPP
Nucleotide Sequence CTGCTTCTGAGGAGACTTTTCTTCTGGACTGACAACTTCCGACCCTGCTGGCCCCAGGTGCTGCCTTCTCTGATGGCTTCTCCAGCGGCCTCAGTACCACCTTAG
CircID chr12:56236671|56236982
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence MRPLEKPSEKAAPGASRVGSCQSRRKVSSEAGSCVPWSSRPLPIFLTALS
Nucleotide Sequence CTGAGGCCGCTGGAGAAGCCATCAGAGAAGGCAGCACCTGGGGCCAGCAGGGTCGGAAGTTGTCAGTCCAGAAGAAAAGTCTCCTCAGAAGCAGGTTCCTGTGTTCCGTGGTCCTCCCGTCCTCTCCCCATCTTCCTGACGGCCCTCTCCTAG
CircID chr12:56236671|56236982
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MITRSPGLPSDLLPSVPTPHTYGQPISEVV
Nucleotide Sequence CTGATAACTAGGAGCCCTGGCCTCCCCTCGGACCTGCTTCCCTCCGTTCCCACCCCTCACACCTATGGCCAGCCCATCAGTGAGGTTGTGTAG
CircID chr12:56236671|56236982
ORF Type ORF5
Protein Length 33
Nucleotide Length 102
Protein Sequence MGPAGSEVVSPEEKSPQKQVPVFRGPPVLSPSS
Nucleotide Sequence CTGGGGCCAGCAGGGTCGGAAGTTGTCAGTCCAGAAGAAAAGTCTCCTCAGAAGCAGGTTCCTGTGTTCCGTGGTCCTCCCGTCCTCTCCCCATCTTCCTGA
CircID chr12:56236671|56236982
ORF Type ORF6
Protein Length 40
Nucleotide Length 120
Protein Sequence MASPRTCFPPFPPLTPMASPSVRLCRPSPRRTIHVISVPP
Nucleotide Sequence CTGGCCTCCCCTCGGACCTGCTTCCCTCCGTTCCCACCCCTCACACCTATGGCCAGCCCATCAGTGAGGTTGTGTAGACCATCTCCCAGGAGGACCATCCACGTGATATCAGTGCCACCC
CircID chr12:56236671|56236982
ORF Type ORF7
Protein Length 36
Nucleotide Length 111
Protein Sequence MSVQKKSLLRSRFLCSVVLPSSPHLPDGPLLAPADN
Nucleotide Sequence TTGTCAGTCCAGAAGAAAAGTCTCCTCAGAAGCAGGTTCCTGTGTTCCGTGGTCCTCCCGTCCTCTCCCCATCTTCCTGACGGCCCTCTCCTAGCCCCAGCTGATAACTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab