CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56239624|56239794
Strand +
CircType exon
Host Gene ENSG00000139645.9;
Algorism CIRI2;
Sequence CTTCTTACTCCCTGGACCTAGAAGGGGAGAAGAGGCTGGAGGTGGGGTGGATGGGGCCAGAGTGAACGGTTCTACAGCTGTATCCCCAGAACCTCCTCCAGGGTCTTGGAAGGAGTCCTGAGAGGTGGGATTGGGGCCGGGCTGGCAGGGCTGAGTTTGCGCACTGTGTAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56239624|56239794 hsa-miR-504-5p 0 0 1
chr12:56239624|56239794 hsa-miR-504-3p 0 0 1
chr12:56239624|56239794 hsa-miR-637 0 0 1
chr12:56239624|56239794 hsa-miR-766-5p 0 0 1
chr12:56239624|56239794 hsa-miR-766-3p 0 0 1
chr12:56239624|56239794 hsa-miR-765 0 0 1
chr12:56239624|56239794 hsa-miR-933 0 1 1
chr12:56239624|56239794 hsa-miR-942-5p 0 0 1
chr12:56239624|56239794 hsa-miR-942-3p 0 0 1
chr12:56239624|56239794 hsa-miR-1202 0 0 1
chr12:56239624|56239794 hsa-miR-1266-5p 0 0 1
chr12:56239624|56239794 hsa-miR-1266-3p 0 0 1
chr12:56239624|56239794 hsa-miR-512-5p 0 1 1
chr12:56239624|56239794 hsa-miR-1224-3p 0 1 1
chr12:56239624|56239794 hsa-miR-1260 0 0 1
chr12:56239624|56239794 hsa-miR-1280 0 0 1
chr12:56239624|56239794 hsa-miR-128 0 0 1
chr12:56239624|56239794 hsa-miR-451 0 0 1
chr12:56239624|56239794 hsa-miR-1260a 0 1 0
chr12:56239624|56239794 hsa-miR-4270 0 1 0
chr12:56239624|56239794 hsa-miR-4519 1 0 0
chr12:56239624|56239794 hsa-miR-3972 0 1 0
chr12:56239624|56239794 hsa-miR-6072 0 1 0
chr12:56239624|56239794 hsa-miR-7703 1 0 0
chr12:56239624|56239794 hsa-miR-8089 0 1 0
chr12:56239624|56239794 hsa-miR-128-3p 1 0 0
chr12:56239624|56239794 hsa-miR-152-5p 0 1 0
chr12:56239624|56239794 hsa-miR-139-5p 1 0 0
chr12:56239624|56239794 hsa-miR-874-5p 0 1 0
chr12:56239624|56239794 hsa-miR-3189-5p 0 1 0
chr12:56239624|56239794 hsa-let-7i-3p 1 1 0
chr12:56239624|56239794 hsa-miR-432-5p 0 1 0
chr12:56239624|56239794 hsa-miR-6849-3p 0 1 0
chr12:56239624|56239794 hsa-miR-6768-5p 1 0 0
chr12:56239624|56239794 hsa-miR-877-3p 0 1 0
chr12:56239624|56239794 hsa-miR-3667-5p 0 1 0
chr12:56239624|56239794 hsa-miR-7109-3p 0 1 0
chr12:56239624|56239794 hsa-miR-3191-5p 1 0 0
chr12:56239624|56239794 hsa-miR-6813-3p 1 0 0
chr12:56239624|56239794 hsa-miR-629-3p 0 1 0
chr12:56239624|56239794 hsa-miR-3940-3p 0 1 0
chr12:56239624|56239794 hsa-miR-5088-3p 0 1 0
chr12:56239624|56239794 hsa-miR-328-3p 1 1 0
chr12:56239624|56239794 hsa-miR-6794-3p 0 1 0
chr12:56239624|56239794 hsa-miR-3173-5p 0 1 0
chr12:56239624|56239794 hsa-miR-6779-3p 0 1 0
chr12:56239624|56239794 hsa-miR-582-5p 0 1 0
chr12:56239624|56239794 hsa-miR-27b-3p 1 0 0
chr12:56239624|56239794 hsa-miR-3156-3p 0 1 0
chr12:56239624|56239794 hsa-miR-3127-3p 0 1 0
chr12:56239624|56239794 hsa-miR-449c-5p 1 0 0
chr12:56239624|56239794 hsa-miR-6799-3p 0 1 0
chr12:56239624|56239794 hsa-miR-4700-5p 0 1 0
chr12:56239624|56239794 hsa-miR-4667-5p 0 1 0
chr12:56239624|56239794 hsa-miR-2682-3p 0 1 0
chr12:56239624|56239794 hsa-miR-4722-3p 0 1 0
chr12:56239624|56239794 hsa-miR-6727-3p 0 1 0
chr12:56239624|56239794 hsa-miR-6775-3p 0 1 0
chr12:56239624|56239794 hsa-miR-10392-3p 0 1 0
chr12:56239624|56239794 hsa-miR-6512-3p 0 1 0
chr12:56239624|56239794 hsa-miR-6819-3p 0 1 0
chr12:56239624|56239794 hsa-miR-6823-3p 0 1 0
chr12:56239624|56239794 hsa-miR-6891-3p 0 1 0
chr12:56239624|56239794 hsa-miR-6781-3p 0 1 0
chr12:56239624|56239794 hsa-miR-6824-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:56239624|56239794
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MYPQNLLQGLGRSPERWDWGRAGRAEFAHCV
Nucleotide Sequence CTGTATCCCCAGAACCTCCTCCAGGGTCTTGGAAGGAGTCCTGAGAGGTGGGATTGGGGCCGGGCTGGCAGGGCTGAGTTTGCGCACTGTGTA
CircID chr12:56239624|56239794
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MPARPQSHLSGLLPRPWRRFWGYSCRTVHSGPIHPTSSLFSPSRSRE
Nucleotide Sequence CTGCCAGCCCGGCCCCAATCCCACCTCTCAGGACTCCTTCCAAGACCCTGGAGGAGGTTCTGGGGATACAGCTGTAGAACCGTTCACTCTGGCCCCATCCACCCCACCTCCAGCCTCTTCTCCCCTTCTAGGTCCAGGGAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab