CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56240928|56241132
Strand +
CircType exon
Host Gene ENSG00000139645.9;
Algorism CIRI2;
Sequence CGTGTCCTCCCCTATATGACAATCAATGTGACCTCTCTTAAGGGCTGCAGCCCCCATCCCCAACCCTGCTGGCTCTGCAAAGCTTGCCTTCCCTTCAATTCTCTCTCCTGAAATCTTCCCATTCCACCCCCTCCCTCTCATCTTGGTGCTGGGAATTAGGTGGTGGGGGGCAAGGGGAGTGAGAAGATGGGTCCTCCAGAGAGAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56240928|56241132 hsa-miR-23a-5p 0 0 1
chr12:56240928|56241132 hsa-miR-23a-3p 0 0 1
chr12:56240928|56241132 hsa-miR-29a-5p 0 0 1
chr12:56240928|56241132 hsa-miR-29a-3p 0 0 1
chr12:56240928|56241132 hsa-miR-214-5p 0 0 1
chr12:56240928|56241132 hsa-miR-214-3p 0 0 1
chr12:56240928|56241132 hsa-miR-23b-5p 0 0 1
chr12:56240928|56241132 hsa-miR-23b-3p 0 0 1
chr12:56240928|56241132 hsa-miR-185-5p 0 0 1
chr12:56240928|56241132 hsa-miR-185-3p 0 0 1
chr12:56240928|56241132 hsa-miR-206 0 0 1
chr12:56240928|56241132 hsa-miR-29c-5p 0 0 1
chr12:56240928|56241132 hsa-miR-29c-3p 0 0 1
chr12:56240928|56241132 hsa-miR-326 0 0 1
chr12:56240928|56241132 hsa-miR-608 1 1 1
chr12:56240928|56241132 hsa-miR-613 0 0 1
chr12:56240928|56241132 hsa-miR-765 0 0 1
chr12:56240928|56241132 hsa-miR-938 0 0 1
chr12:56240928|56241132 hsa-miR-942-5p 0 0 1
chr12:56240928|56241132 hsa-miR-942-3p 0 0 1
chr12:56240928|56241132 hsa-miR-1229-5p 0 0 1
chr12:56240928|56241132 hsa-miR-1229-3p 0 0 1
chr12:56240928|56241132 hsa-miR-1321 0 0 1
chr12:56240928|56241132 hsa-miR-1197 0 0 1
chr12:56240928|56241132 hsa-miR-296-3p 1 1 1
chr12:56240928|56241132 hsa-miR-1184 0 1 1
chr12:56240928|56241132 hsa-miR-483-3p 0 1 1
chr12:56240928|56241132 hsa-miR-330-5p 0 0 1
chr12:56240928|56241132 hsa-miR-508-3p 0 0 1
chr12:56240928|56241132 hsa-miR-220b 0 0 1
chr12:56240928|56241132 hsa-miR-1 0 0 1
chr12:56240928|56241132 hsa-miR-516b 0 0 1
chr12:56240928|56241132 hsa-miR-129-3p 0 0 1
chr12:56240928|56241132 hsa-miR-29b 0 0 1
chr12:56240928|56241132 hsa-miR-219-5p 0 0 1
chr12:56240928|56241132 hsa-miR-637 1 0 0
chr12:56240928|56241132 hsa-miR-762 1 0 0
chr12:56240928|56241132 hsa-miR-761 0 1 0
chr12:56240928|56241132 hsa-miR-1203 1 0 0
chr12:56240928|56241132 hsa-miR-3132 1 0 0
chr12:56240928|56241132 hsa-miR-3137 1 0 0
chr12:56240928|56241132 hsa-miR-3918 1 0 0
chr12:56240928|56241132 hsa-miR-4447 1 0 0
chr12:56240928|56241132 hsa-miR-2392 1 0 0
chr12:56240928|56241132 hsa-miR-4507 1 0 0
chr12:56240928|56241132 hsa-miR-4510 0 1 0
chr12:56240928|56241132 hsa-miR-4514 1 0 0
chr12:56240928|56241132 hsa-miR-4644 1 1 0
chr12:56240928|56241132 hsa-miR-4651 1 0 0
chr12:56240928|56241132 hsa-miR-4688 1 0 0
chr12:56240928|56241132 hsa-miR-4689 1 0 0
chr12:56240928|56241132 hsa-miR-4739 1 1 0
chr12:56240928|56241132 hsa-miR-4741 1 0 0
chr12:56240928|56241132 hsa-miR-4748 1 0 0
chr12:56240928|56241132 hsa-miR-4751 0 1 0
chr12:56240928|56241132 hsa-miR-5192 1 0 0
chr12:56240928|56241132 hsa-miR-5194 1 0 0
chr12:56240928|56241132 hsa-miR-5572 1 0 0
chr12:56240928|56241132 hsa-miR-5703 1 0 0
chr12:56240928|56241132 hsa-miR-5739 1 0 0
chr12:56240928|56241132 hsa-miR-5787 1 0 0
chr12:56240928|56241132 hsa-miR-6088 0 1 0
chr12:56240928|56241132 hsa-miR-6090 1 0 0
chr12:56240928|56241132 hsa-miR-6125 1 0 0
chr12:56240928|56241132 hsa-miR-6127 1 1 0
chr12:56240928|56241132 hsa-miR-6129 0 1 0
chr12:56240928|56241132 hsa-miR-6130 0 1 0
chr12:56240928|56241132 hsa-miR-6132 1 0 0
chr12:56240928|56241132 hsa-miR-6133 0 1 0
chr12:56240928|56241132 hsa-miR-6745 0 1 0
chr12:56240928|56241132 hsa-miR-8085 1 0 0
chr12:56240928|56241132 hsa-miR-211-3p 1 0 0
chr12:56240928|56241132 hsa-miR-4433b-3p 1 0 0
chr12:56240928|56241132 hsa-miR-92a-1-5p 1 1 0
chr12:56240928|56241132 hsa-miR-6734-5p 1 0 0
chr12:56240928|56241132 hsa-miR-504-3p 1 0 0
chr12:56240928|56241132 hsa-miR-4433a-3p 1 0 0
chr12:56240928|56241132 hsa-miR-6825-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6894-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6857-5p 1 1 0
chr12:56240928|56241132 hsa-miR-205-3p 0 1 0
chr12:56240928|56241132 hsa-miR-6510-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6728-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6807-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6757-5p 1 0 0
chr12:56240928|56241132 hsa-miR-4695-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6762-3p 1 0 0
chr12:56240928|56241132 hsa-miR-770-5p 0 1 0
chr12:56240928|56241132 hsa-miR-197-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6873-3p 0 1 0
chr12:56240928|56241132 hsa-miR-1915-5p 0 1 0
chr12:56240928|56241132 hsa-miR-6716-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6732-5p 1 1 0
chr12:56240928|56241132 hsa-miR-3190-3p 1 0 0
chr12:56240928|56241132 hsa-miR-6827-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6760-5p 1 1 0
chr12:56240928|56241132 hsa-miR-2467-3p 1 0 0
chr12:56240928|56241132 hsa-miR-6782-5p 1 1 0
chr12:56240928|56241132 hsa-miR-3194-5p 1 0 0
chr12:56240928|56241132 hsa-miR-1226-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6740-5p 1 0 0
chr12:56240928|56241132 hsa-miR-4786-3p 1 0 0
chr12:56240928|56241132 hsa-miR-4640-5p 1 0 0
chr12:56240928|56241132 hsa-miR-885-3p 1 0 0
chr12:56240928|56241132 hsa-miR-6771-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6823-5p 1 1 0
chr12:56240928|56241132 hsa-miR-3191-5p 0 1 0
chr12:56240928|56241132 hsa-miR-4732-5p 1 0 0
chr12:56240928|56241132 hsa-miR-3202 1 0 0
chr12:56240928|56241132 hsa-miR-4787-5p 1 0 0
chr12:56240928|56241132 hsa-miR-149-3p 1 0 0
chr12:56240928|56241132 hsa-miR-937-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6824-5p 1 1 0
chr12:56240928|56241132 hsa-miR-7156-3p 0 1 0
chr12:56240928|56241132 hsa-miR-3158-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6864-5p 1 1 0
chr12:56240928|56241132 hsa-miR-3065-3p 0 1 0
chr12:56240928|56241132 hsa-miR-211-5p 0 1 0
chr12:56240928|56241132 hsa-miR-3678-3p 0 1 0
chr12:56240928|56241132 hsa-miR-7846-3p 1 0 0
chr12:56240928|56241132 hsa-miR-1251-3p 1 1 0
chr12:56240928|56241132 hsa-miR-744-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6758-3p 0 1 0
chr12:56240928|56241132 hsa-miR-605-3p 0 1 0
chr12:56240928|56241132 hsa-miR-6501-3p 1 0 0
chr12:56240928|56241132 hsa-miR-518c-5p 1 1 0
chr12:56240928|56241132 hsa-miR-3664-3p 1 0 0
chr12:56240928|56241132 hsa-miR-6780b-3p 0 1 0
chr12:56240928|56241132 hsa-miR-1207-5p 1 0 0
chr12:56240928|56241132 hsa-miR-4763-3p 1 0 0
chr12:56240928|56241132 hsa-miR-6812-5p 1 1 0
chr12:56240928|56241132 hsa-miR-6893-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6726-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6737-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6743-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6752-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6756-5p 1 1 0
chr12:56240928|56241132 hsa-miR-6803-5p 1 1 0
chr12:56240928|56241132 hsa-miR-6819-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6842-5p 1 1 0
chr12:56240928|56241132 hsa-miR-7110-5p 1 1 0
chr12:56240928|56241132 hsa-miR-1249-5p 1 1 0
chr12:56240928|56241132 hsa-miR-6722-3p 1 0 0
chr12:56240928|56241132 hsa-miR-6751-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6763-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6779-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6780a-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6797-5p 1 1 0
chr12:56240928|56241132 hsa-miR-4728-5p 1 1 0
chr12:56240928|56241132 hsa-miR-5196-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6780b-5p 1 1 0
chr12:56240928|56241132 hsa-miR-6836-5p 1 0 0
chr12:56240928|56241132 hsa-miR-1237-5p 1 0 0
chr12:56240928|56241132 hsa-miR-1909-3p 1 0 0
chr12:56240928|56241132 hsa-miR-4725-3p 1 0 0
chr12:56240928|56241132 hsa-miR-4726-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6738-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6846-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6848-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6883-5p 1 1 0
chr12:56240928|56241132 hsa-miR-4697-5p 1 0 0
chr12:56240928|56241132 hsa-miR-939-5p 1 0 0
chr12:56240928|56241132 hsa-miR-3940-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6731-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6758-5p 1 1 0
chr12:56240928|56241132 hsa-miR-6856-5p 1 1 0
chr12:56240928|56241132 hsa-miR-1914-3p 1 0 0
chr12:56240928|56241132 hsa-miR-6855-5p 0 1 0
chr12:56240928|56241132 hsa-miR-3679-5p 1 0 0
chr12:56240928|56241132 hsa-miR-4646-5p 1 0 0
chr12:56240928|56241132 hsa-miR-4747-5p 1 1 0
chr12:56240928|56241132 hsa-miR-6891-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6750-5p 1 0 0
chr12:56240928|56241132 hsa-miR-6766-5p 1 1 0
chr12:56240928|56241132 hsa-miR-6785-5p 1 1 0
chr12:56240928|56241132 hsa-miR-6837-5p 1 0 0
chr12:56240928|56241132 hsa-miR-4723-3p 1 0 0
chr12:56240928|56241132 hsa-miR-4768-5p 0 1 0
chr12:56240928|56241132 hsa-miR-323b-5p 1 0 0
chr12:56240928|56241132 hsa-miR-3619-5p 1 0 0
chr12:56240928|56241132 hsa-miR-3622b-3p 1 0 0
chr12:56240928|56241132 hsa-miR-6824-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:56240928|56241132
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MTINVTSLKGCSPHPQPCWLCKACLPFNSLS
Nucleotide Sequence ATGACAATCAATGTGACCTCTCTTAAGGGCTGCAGCCCCCATCCCCAACCCTGCTGGCTCTGCAAAGCTTGCCTTCCCTTCAATTCTCTCTCCTGA
CircID chr12:56240928|56241132
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MQPPSPTLLALQSLPSLQFSLLKSSHSTPSLSSWCWELGGGGQGE
Nucleotide Sequence CTGCAGCCCCCATCCCCAACCCTGCTGGCTCTGCAAAGCTTGCCTTCCCTTCAATTCTCTCTCCTGAAATCTTCCCATTCCACCCCCTCCCTCTCATCTTGGTGCTGGGAATTAGGTGGTGGGGGGCAAGGGGAGTGA
CircID chr12:56240928|56241132
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MEDPSSHSPCPPPPNSQHQDEREGVEWEDFRREN
Nucleotide Sequence CTGGAGGACCCATCTTCTCACTCCCCTTGCCCCCCACCACCTAATTCCCAGCACCAAGATGAGAGGGAGGGGGTGGAATGGGAAGATTTCAGGAGAGAGAATTGA
CircID chr12:56240928|56241132
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MRGRGWNGKISGERIEGKASFAEPAGLGMGAAALKRGHIDCHIGEDT
Nucleotide Sequence ATGAGAGGGAGGGGGTGGAATGGGAAGATTTCAGGAGAGAGAATTGAAGGGAAGGCAAGCTTTGCAGAGCCAGCAGGGTTGGGGATGGGGGCTGCAGCCCTTAAGAGAGGTCACATTGATTGTCATATAGGGGAGGACACG
CircID chr12:56240928|56241132
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MGRFQERELKGRQALQSQQGWGWGLQPLREVTLIVI
Nucleotide Sequence ATGGGAAGATTTCAGGAGAGAGAATTGAAGGGAAGGCAAGCTTTGCAGAGCCAGCAGGGTTGGGGATGGGGGCTGCAGCCCTTAAGAGAGGTCACATTGATTGTCATATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab