CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56253651|56253867
Strand -
CircType exon
Host Gene ENSG00000139645.9;
Algorism CIRI2;
Sequence CTCCCTAGATTCTAGAAATGAGTTCCTTGGGGGAGGAGGGGATGAGAGCACAAAGTCTCCCAGGTCCATACCATTCTGGATGAGGATCTGGGAGCGTGTGAAACGGCCATGGATTGCAGCCATGTGCAGAGGACTTTTCCCTTCTTTGCTCTGTGGAAACATGGTGGGTTTTTGTTTTTGTTTTTTTTTCCAGTGCAAAGCACAGAGAATGCCCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56253651|56253867 hsa-miR-377-5p 0 0 1
chr12:56253651|56253867 hsa-miR-377-3p 0 0 1
chr12:56253651|56253867 hsa-miR-492 0 1 1
chr12:56253651|56253867 hsa-miR-507 0 0 1
chr12:56253651|56253867 hsa-miR-557 0 0 1
chr12:56253651|56253867 hsa-miR-604 0 0 1
chr12:56253651|56253867 hsa-miR-631 0 0 1
chr12:56253651|56253867 hsa-miR-636 0 0 1
chr12:56253651|56253867 hsa-miR-647 0 1 1
chr12:56253651|56253867 hsa-miR-1321 0 0 1
chr12:56253651|56253867 hsa-miR-361-3p 0 0 1
chr12:56253651|56253867 hsa-miR-875-3p 0 0 1
chr12:56253651|56253867 hsa-miR-518d-5p 0 0 1
chr12:56253651|56253867 hsa-miR-519b-5p 0 0 1
chr12:56253651|56253867 hsa-miR-519c-5p 0 0 1
chr12:56253651|56253867 hsa-miR-520c-5p 0 0 1
chr12:56253651|56253867 hsa-miR-548d-3p 0 1 1
chr12:56253651|56253867 hsa-miR-218 0 0 1
chr12:56253651|56253867 hsa-miR-526a 0 0 1
chr12:56253651|56253867 hsa-miR-637 0 1 0
chr12:56253651|56253867 hsa-miR-2113 0 1 0
chr12:56253651|56253867 hsa-miR-3661 0 1 0
chr12:56253651|56253867 hsa-miR-3909 0 1 0
chr12:56253651|56253867 hsa-miR-4535 0 1 0
chr12:56253651|56253867 hsa-miR-7851-3p 0 1 0
chr12:56253651|56253867 hsa-miR-6762-3p 1 0 0
chr12:56253651|56253867 hsa-miR-4761-3p 0 1 0
chr12:56253651|56253867 hsa-miR-33a-3p 0 1 0
chr12:56253651|56253867 hsa-miR-6783-5p 1 1 0
chr12:56253651|56253867 hsa-miR-939-3p 1 0 0
chr12:56253651|56253867 hsa-miR-5010-3p 0 1 0
chr12:56253651|56253867 hsa-miR-3667-3p 0 1 0
chr12:56253651|56253867 hsa-miR-4717-3p 0 1 0
chr12:56253651|56253867 hsa-miR-3202 0 1 0
chr12:56253651|56253867 hsa-miR-7111-3p 0 1 0
chr12:56253651|56253867 hsa-miR-5196-3p 0 1 0
chr12:56253651|56253867 hsa-miR-6870-3p 1 1 0
chr12:56253651|56253867 hsa-miR-1236-3p 1 0 0
chr12:56253651|56253867 hsa-miR-6887-3p 0 1 0
chr12:56253651|56253867 hsa-miR-6826-3p 0 1 0
chr12:56253651|56253867 hsa-miR-4749-3p 1 1 0
chr12:56253651|56253867 hsa-miR-5589-3p 1 1 0
chr12:56253651|56253867 hsa-miR-6729-3p 0 1 0
chr12:56253651|56253867 hsa-miR-30c-1-3p 0 1 0
chr12:56253651|56253867 hsa-miR-6805-3p 1 0 0
chr12:56253651|56253867 hsa-miR-3059-5p 1 0 0
chr12:56253651|56253867 hsa-miR-6891-3p 0 1 0
chr12:56253651|56253867 hsa-miR-7157-3p 0 1 0
chr12:56253651|56253867 hsa-miR-3613-3p 0 1 0
chr12:56253651|56253867 hsa-miR-548as-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr12:56253651|56253867
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MDEDLGACETAMDCSHVQRTFPFFALWKHGGFLFLFFFPVQSTENAL
Nucleotide Sequence CTGGATGAGGATCTGGGAGCGTGTGAAACGGCCATGGATTGCAGCCATGTGCAGAGGACTTTTCCCTTCTTTGCTCTGTGGAAACATGGTGGGTTTTTGTTTTTGTTTTTTTTTCCAGTGCAAAGCACAGAGAATGCCCTA

CircID chr12:56253651|56253867
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MRIWERVKRPWIAAMCRGLFPSLLCGNMVGFCFCFFFQCKAQRMPY
Nucleotide Sequence ATGAGGATCTGGGAGCGTGTGAAACGGCCATGGATTGCAGCCATGTGCAGAGGACTTTTCCCTTCTTTGCTCTGTGGAAACATGGTGGGTTTTTGTTTTTGTTTTTTTTTCCAGTGCAAAGCACAGAGAATGCCCTAC

CircID chr12:56253651|56253867
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MQPCAEDFSLLCSVETWWVFVFVFFSSAKHRECP
Nucleotide Sequence TTGCAGCCATGTGCAGAGGACTTTTCCCTTCTTTGCTCTGTGGAAACATGGTGGGTTTTTGTTTTTGTTTTTTTTTCCAGTGCAAAGCACAGAGAATGCCCT

CircID chr12:56253651|56253867
ORF Type ORF4
Protein Length 66
Nucleotide Length 201
Protein Sequence MCFALEKKTKTKTHHVSTEQRREKSSAHGCNPWPFHTLPDPHPEWYGPGRLCALIPSSPKELISRI
Nucleotide Sequence CTGTGCTTTGCACTGGAAAAAAAAACAAAAACAAAAACCCACCATGTTTCCACAGAGCAAAGAAGGGAAAAGTCCTCTGCACATGGCTGCAATCCATGGCCGTTTCACACGCTCCCAGATCCTCATCCAGAATGGTATGGACCTGGGAGACTTTGTGCTCTCATCCCCTCCTCCCCCAAGGAACTCATTTCTAGAATCTAG

CircID chr12:56253651|56253867
ORF Type ORF5
Protein Length 66
Nucleotide Length 198
Protein Sequence MHWKKKQKQKPTMFPQSKEGKSPLHMAAIHGRFTRSQILIQNGMDLGDFVLSSPPPPRNSFLESRE
Nucleotide Sequence TTGCACTGGAAAAAAAAACAAAAACAAAAACCCACCATGTTTCCACAGAGCAAAGAAGGGAAAAGTCCTCTGCACATGGCTGCAATCCATGGCCGTTTCACACGCTCCCAGATCCTCATCCAGAATGGTATGGACCTGGGAGACTTTGTGCTCTCATCCCCTCCTCCCCCAAGGAACTCATTTCTAGAATCTAGGGAG

CircID chr12:56253651|56253867
ORF Type ORF6
Protein Length 35
Nucleotide Length 108
Protein Sequence MQSMAVSHAPRSSSRMVWTWETLCSHPLLPQGTHF
Nucleotide Sequence CTGCAATCCATGGCCGTTTCACACGCTCCCAGATCCTCATCCAGAATGGTATGGACCTGGGAGACTTTGTGCTCTCATCCCCTCCTCCCCCAAGGAACTCATTTCTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites