CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56322423|56322731
Strand -
CircType exon
Host Gene ENSG00000135473.13;
Algorism CIRI2;
Sequence CTTATCAATAGGTTCAATAAGAAAGTCATTGAACAGATACCACTGCTGGTGAGTAACGCCCTATGGAAATACAAAGAAAGCCTGTGGCGATACAAATTGATGGCTGGACCACTCTGTCTCAGACTCAAGGACAGATCTGGGACTCACTGTGGCCATCCCAGGAGTGTTCCTGCCCTCTACAACCTCACTCACCTCCTTGCGCTGGTGGTAGGTCTCTCCAACTTTGATGTGAGCCACCAGGCTGCCCCCTGTGCGTGAGTCCAGGATGTGTACCACAGTAGCCATCAGGTCATACACATAGACACCATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56322423|56322731 hsa-miR-185-5p 0 0 1
chr12:56322423|56322731 hsa-miR-185-3p 0 0 1
chr12:56322423|56322731 hsa-miR-422a 0 1 1
chr12:56322423|56322731 hsa-miR-520g-5p 0 0 1
chr12:56322423|56322731 hsa-miR-520g-3p 0 0 1
chr12:56322423|56322731 hsa-miR-520h 0 0 1
chr12:56322423|56322731 hsa-miR-587 0 1 1
chr12:56322423|56322731 hsa-miR-588 0 1 1
chr12:56322423|56322731 hsa-miR-620 0 0 1
chr12:56322423|56322731 hsa-miR-627-5p 0 0 1
chr12:56322423|56322731 hsa-miR-627-3p 0 0 1
chr12:56322423|56322731 hsa-miR-631 0 0 1
chr12:56322423|56322731 hsa-miR-634 0 0 1
chr12:56322423|56322731 hsa-miR-892a 0 0 1
chr12:56322423|56322731 hsa-miR-873-5p 0 0 1
chr12:56322423|56322731 hsa-miR-873-3p 0 0 1
chr12:56322423|56322731 hsa-miR-924 0 0 1
chr12:56322423|56322731 hsa-miR-1226-5p 0 0 1
chr12:56322423|56322731 hsa-miR-1226-3p 0 0 1
chr12:56322423|56322731 hsa-miR-1294 0 0 1
chr12:56322423|56322731 hsa-miR-1270 0 0 1
chr12:56322423|56322731 hsa-miR-769-5p 0 0 1
chr12:56322423|56322731 hsa-miR-486-3p 0 1 1
chr12:56322423|56322731 hsa-miR-483-3p 0 0 1
chr12:56322423|56322731 hsa-miR-128 0 0 1
chr12:56322423|56322731 hsa-miR-220c 0 0 1
chr12:56322423|56322731 hsa-miR-378 0 0 1
chr12:56322423|56322731 hsa-miR-24 0 0 1
chr12:56322423|56322731 hsa-miR-658 1 0 0
chr12:56322423|56322731 hsa-miR-1262 0 1 0
chr12:56322423|56322731 hsa-miR-1321 1 0 0
chr12:56322423|56322731 hsa-miR-3174 0 1 0
chr12:56322423|56322731 hsa-miR-3193 1 0 0
chr12:56322423|56322731 hsa-miR-4318 0 1 0
chr12:56322423|56322731 hsa-miR-4270 1 0 0
chr12:56322423|56322731 hsa-miR-4284 1 1 0
chr12:56322423|56322731 hsa-miR-4456 0 1 0
chr12:56322423|56322731 hsa-miR-3689c 1 0 0
chr12:56322423|56322731 hsa-miR-4533 1 0 0
chr12:56322423|56322731 hsa-miR-4656 1 0 0
chr12:56322423|56322731 hsa-miR-4739 1 0 0
chr12:56322423|56322731 hsa-miR-6085 1 0 0
chr12:56322423|56322731 hsa-miR-6086 1 1 0
chr12:56322423|56322731 hsa-miR-6133 1 0 0
chr12:56322423|56322731 hsa-miR-6134 1 0 0
chr12:56322423|56322731 hsa-miR-12118 0 1 0
chr12:56322423|56322731 hsa-miR-12131 0 1 0
chr12:56322423|56322731 hsa-miR-128-3p 0 1 0
chr12:56322423|56322731 hsa-miR-150-3p 0 1 0
chr12:56322423|56322731 hsa-miR-6747-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6809-5p 1 0 0
chr12:56322423|56322731 hsa-miR-7106-5p 1 0 0
chr12:56322423|56322731 hsa-miR-125a-3p 1 0 0
chr12:56322423|56322731 hsa-miR-6799-5p 1 0 0
chr12:56322423|56322731 hsa-miR-4695-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6721-5p 0 1 0
chr12:56322423|56322731 hsa-miR-8069 1 0 0
chr12:56322423|56322731 hsa-miR-659-3p 1 0 0
chr12:56322423|56322731 hsa-miR-6732-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6805-5p 1 1 0
chr12:56322423|56322731 hsa-miR-6798-5p 0 1 0
chr12:56322423|56322731 hsa-miR-6881-5p 1 0 0
chr12:56322423|56322731 hsa-miR-3150b-3p 1 0 0
chr12:56322423|56322731 hsa-miR-1343-3p 0 1 0
chr12:56322423|56322731 hsa-miR-4793-5p 0 1 0
chr12:56322423|56322731 hsa-miR-6753-5p 1 0 0
chr12:56322423|56322731 hsa-miR-7854-3p 1 0 0
chr12:56322423|56322731 hsa-miR-4743-5p 1 0 0
chr12:56322423|56322731 hsa-miR-4787-5p 1 0 0
chr12:56322423|56322731 hsa-miR-3690 0 1 0
chr12:56322423|56322731 hsa-miR-3189-3p 0 1 0
chr12:56322423|56322731 hsa-miR-4707-5p 1 0 0
chr12:56322423|56322731 hsa-let-7e-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6499-5p 1 0 0
chr12:56322423|56322731 hsa-miR-216a-3p 0 1 0
chr12:56322423|56322731 hsa-miR-7113-5p 1 0 0
chr12:56322423|56322731 hsa-miR-4524a-3p 0 1 0
chr12:56322423|56322731 hsa-miR-135a-5p 0 1 0
chr12:56322423|56322731 hsa-miR-4797-5p 0 1 0
chr12:56322423|56322731 hsa-miR-1207-5p 1 0 0
chr12:56322423|56322731 hsa-miR-3689b-3p 1 0 0
chr12:56322423|56322731 hsa-miR-6769b-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6812-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6870-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6743-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6752-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6754-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6803-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6851-5p 1 0 0
chr12:56322423|56322731 hsa-miR-7110-5p 1 0 0
chr12:56322423|56322731 hsa-miR-1249-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6751-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6879-5p 1 1 0
chr12:56322423|56322731 hsa-miR-4728-5p 1 0 0
chr12:56322423|56322731 hsa-miR-10526-3p 1 0 0
chr12:56322423|56322731 hsa-miR-328-5p 1 1 0
chr12:56322423|56322731 hsa-miR-4632-5p 0 1 0
chr12:56322423|56322731 hsa-miR-4649-5p 1 0 0
chr12:56322423|56322731 hsa-miR-4745-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6729-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6735-5p 0 1 0
chr12:56322423|56322731 hsa-miR-6848-5p 1 0 0
chr12:56322423|56322731 hsa-miR-4436b-3p 0 1 0
chr12:56322423|56322731 hsa-miR-7843-5p 0 1 0
chr12:56322423|56322731 hsa-miR-6855-5p 0 1 0
chr12:56322423|56322731 hsa-miR-6891-5p 1 1 0
chr12:56322423|56322731 hsa-miR-3689d 1 0 0
chr12:56322423|56322731 hsa-miR-323b-5p 1 0 0
chr12:56322423|56322731 hsa-miR-6506-5p 0 1 0
chr12:56322423|56322731 hsa-miR-203b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:56322423|56322731
ORF Type ORF1
Protein Length 71
Nucleotide Length 216
Protein Sequence MLVSNALWKYKESLWRYKLMAGPLCLRLKDRSGTHCGHPRSVPALYNLTHLLALVVGLSNFDVSHQAAPCA
Nucleotide Sequence CTGCTGGTGAGTAACGCCCTATGGAAATACAAAGAAAGCCTGTGGCGATACAAATTGATGGCTGGACCACTCTGTCTCAGACTCAAGGACAGATCTGGGACTCACTGTGGCCATCCCAGGAGTGTTCCTGCCCTCTACAACCTCACTCACCTCCTTGCGCTGGTGGTAGGTCTCTCCAACTTTGATGTGAGCCACCAGGCTGCCCCCTGTGCGTGA
CircID chr12:56322423|56322731
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MDHSVSDSRTDLGLTVAIPGVFLPSTTSLTSLRWW
Nucleotide Sequence CTGGACCACTCTGTCTCAGACTCAAGGACAGATCTGGGACTCACTGTGGCCATCCCAGGAGTGTTCCTGCCCTCTACAACCTCACTCACCTCCTTGCGCTGGTGGTAG
CircID chr12:56322423|56322731
ORF Type ORF3
Protein Length 54
Nucleotide Length 165
Protein Sequence MEIQRKPVAIQIDGWTTLSQTQGQIWDSLWPSQECSCPLQPHSPPCAGGRSLQL
Nucleotide Sequence ATGGAAATACAAAGAAAGCCTGTGGCGATACAAATTGATGGCTGGACCACTCTGTCTCAGACTCAAGGACAGATCTGGGACTCACTGTGGCCATCCCAGGAGTGTTCCTGCCCTCTACAACCTCACTCACCTCCTTGCGCTGGTGGTAGGTCTCTCCAACTTTGA
CircID chr12:56322423|56322731
ORF Type ORF4
Protein Length 75
Nucleotide Length 228
Protein Sequence MMATVVHILDSRTGGSLVAHIKVGETYHQRKEVSEVVEGRNTPGMATVSPRSVLESETEWSSHQFVSPQAFFVFP
Nucleotide Sequence CTGATGGCTACTGTGGTACACATCCTGGACTCACGCACAGGGGGCAGCCTGGTGGCTCACATCAAAGTTGGAGAGACCTACCACCAGCGCAAGGAGGTGAGTGAGGTTGTAGAGGGCAGGAACACTCCTGGGATGGCCACAGTGAGTCCCAGATCTGTCCTTGAGTCTGAGACAGAGTGGTCCAGCCATCAATTTGTATCGCCACAGGCTTTCTTTGTATTTCCATAG
CircID chr12:56322423|56322731
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MWYTSWTHAQGAAWWLTSKLERPTTSARR
Nucleotide Sequence CTGTGGTACACATCCTGGACTCACGCACAGGGGGCAGCCTGGTGGCTCACATCAAAGTTGGAGAGACCTACCACCAGCGCAAGGAGGTGA
CircID chr12:56322423|56322731
ORF Type ORF6
Protein Length 44
Nucleotide Length 132
Protein Sequence MSLSLRQSGPAINLYRHRLSLYFHRALLTSSGICSMTFLLNLLI
Nucleotide Sequence CTGTCCTTGAGTCTGAGACAGAGTGGTCCAGCCATCAATTTGTATCGCCACAGGCTTTCTTTGTATTTCCATAGGGCGTTACTCACCAGCAGTGGTATCTGTTCAATGACTTTCTTATTGAACCTATTGATA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab