CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56424870|56425107
Strand +
CircType exon
Host Gene ENSG00000111602.10;
Algorism CIRI2;
Sequence CAGGCCATTGTTTCTGGTAATGTCCCATCTAGCCCAGAAGAAGTGGAGGCTGTGTGGCCAGCCCTGGCTGAGCAGCTACAGTGCTGTGCCCAGGTAGGTGGTTACAGAAACCCTGTCTTTTTTGAGAATAGTGCTCAGGGTATACAATCTGGGTTTTCCACTCCCTCCGCTCCCATAGCTTTATCCATCTCTAGAATTCTGAGCTCAGCATGGACTCCGTGGTTCCCTTTGATGCGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56424870|56425107 hsa-miR-22-5p 0 0 1
chr12:56424870|56425107 hsa-miR-22-3p 0 0 1
chr12:56424870|56425107 hsa-miR-10a-5p 0 0 1
chr12:56424870|56425107 hsa-miR-10a-3p 0 0 1
chr12:56424870|56425107 hsa-miR-10b-5p 0 0 1
chr12:56424870|56425107 hsa-miR-10b-3p 0 0 1
chr12:56424870|56425107 hsa-miR-320a-5p 0 0 1
chr12:56424870|56425107 hsa-miR-320a-3p 0 0 1
chr12:56424870|56425107 hsa-miR-568 0 0 1
chr12:56424870|56425107 hsa-miR-588 0 0 1
chr12:56424870|56425107 hsa-miR-612 1 1 1
chr12:56424870|56425107 hsa-miR-619-5p 0 0 1
chr12:56424870|56425107 hsa-miR-619-3p 0 0 1
chr12:56424870|56425107 hsa-miR-658 1 1 1
chr12:56424870|56425107 hsa-miR-920 0 0 1
chr12:56424870|56425107 hsa-miR-1183 0 1 1
chr12:56424870|56425107 hsa-miR-1261 0 1 1
chr12:56424870|56425107 hsa-miR-513c-5p 0 0 1
chr12:56424870|56425107 hsa-miR-513c-3p 0 0 1
chr12:56424870|56425107 hsa-miR-1289 0 1 1
chr12:56424870|56425107 hsa-miR-767-3p 0 0 1
chr12:56424870|56425107 hsa-miR-518d-5p 0 0 1
chr12:56424870|56425107 hsa-miR-519b-5p 0 0 1
chr12:56424870|56425107 hsa-miR-519c-5p 0 0 1
chr12:56424870|56425107 hsa-miR-520c-5p 0 0 1
chr12:56424870|56425107 hsa-miR-320b 0 0 1
chr12:56424870|56425107 hsa-miR-320c 0 0 1
chr12:56424870|56425107 hsa-miR-125a-5p 0 0 1
chr12:56424870|56425107 hsa-miR-1302 0 0 1
chr12:56424870|56425107 hsa-miR-320d 0 0 1
chr12:56424870|56425107 hsa-miR-508-3p 0 1 1
chr12:56424870|56425107 hsa-miR-371-5p 0 0 1
chr12:56424870|56425107 hsa-miR-125b 0 0 1
chr12:56424870|56425107 hsa-miR-323-3p 0 0 1
chr12:56424870|56425107 hsa-miR-1285 0 0 1
chr12:56424870|56425107 hsa-miR-526a 0 0 1
chr12:56424870|56425107 hsa-miR-762 0 1 0
chr12:56424870|56425107 hsa-miR-760 1 0 0
chr12:56424870|56425107 hsa-miR-1270 1 0 0
chr12:56424870|56425107 hsa-miR-3137 0 1 0
chr12:56424870|56425107 hsa-miR-4298 0 1 0
chr12:56424870|56425107 hsa-miR-4314 1 0 0
chr12:56424870|56425107 hsa-miR-4319 0 1 0
chr12:56424870|56425107 hsa-miR-4492 0 1 0
chr12:56424870|56425107 hsa-miR-4498 0 1 0
chr12:56424870|56425107 hsa-miR-4505 1 0 0
chr12:56424870|56425107 hsa-miR-4510 1 1 0
chr12:56424870|56425107 hsa-miR-4739 1 0 0
chr12:56424870|56425107 hsa-miR-5192 1 0 0
chr12:56424870|56425107 hsa-miR-5698 1 0 0
chr12:56424870|56425107 hsa-miR-6088 1 0 0
chr12:56424870|56425107 hsa-miR-6090 1 1 0
chr12:56424870|56425107 hsa-miR-6127 1 1 0
chr12:56424870|56425107 hsa-miR-6130 1 1 0
chr12:56424870|56425107 hsa-miR-6860 0 1 0
chr12:56424870|56425107 hsa-miR-8060 1 0 0
chr12:56424870|56425107 hsa-miR-4433b-3p 1 0 0
chr12:56424870|56425107 hsa-miR-3157-5p 0 1 0
chr12:56424870|56425107 hsa-miR-6747-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6728-5p 1 0 0
chr12:56424870|56425107 hsa-miR-7851-3p 0 1 0
chr12:56424870|56425107 hsa-miR-6515-5p 1 1 0
chr12:56424870|56425107 hsa-miR-4728-3p 0 1 0
chr12:56424870|56425107 hsa-miR-6871-5p 1 1 0
chr12:56424870|56425107 hsa-miR-3180-3p 1 0 0
chr12:56424870|56425107 hsa-miR-6732-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6805-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6827-5p 1 1 0
chr12:56424870|56425107 hsa-miR-3126-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6782-5p 1 0 0
chr12:56424870|56425107 hsa-miR-4436b-5p 0 1 0
chr12:56424870|56425107 hsa-miR-5088-5p 1 0 0
chr12:56424870|56425107 hsa-miR-885-3p 1 0 0
chr12:56424870|56425107 hsa-miR-4743-5p 1 0 0
chr12:56424870|56425107 hsa-miR-4446-3p 0 1 0
chr12:56424870|56425107 hsa-miR-7846-3p 0 1 0
chr12:56424870|56425107 hsa-miR-1225-5p 0 1 0
chr12:56424870|56425107 hsa-miR-6832-5p 0 1 0
chr12:56424870|56425107 hsa-miR-383-3p 0 1 0
chr12:56424870|56425107 hsa-miR-675-3p 0 1 0
chr12:56424870|56425107 hsa-miR-6808-3p 0 1 0
chr12:56424870|56425107 hsa-miR-10400-5p 1 0 0
chr12:56424870|56425107 hsa-miR-4763-3p 1 0 0
chr12:56424870|56425107 hsa-miR-1343-5p 1 0 0
chr12:56424870|56425107 hsa-miR-5001-5p 1 1 0
chr12:56424870|56425107 hsa-miR-6737-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6752-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6803-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6819-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6842-5p 1 0 0
chr12:56424870|56425107 hsa-miR-7110-5p 1 0 0
chr12:56424870|56425107 hsa-miR-10401-5p 1 0 0
chr12:56424870|56425107 hsa-miR-1249-5p 1 1 0
chr12:56424870|56425107 hsa-miR-6779-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6797-5p 1 0 0
chr12:56424870|56425107 hsa-miR-7111-5p 1 0 0
chr12:56424870|56425107 hsa-miR-3620-5p 1 0 0
chr12:56424870|56425107 hsa-miR-5189-5p 1 1 0
chr12:56424870|56425107 hsa-miR-1237-5p 1 0 0
chr12:56424870|56425107 hsa-miR-4685-5p 0 1 0
chr12:56424870|56425107 hsa-miR-6795-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6889-5p 1 0 0
chr12:56424870|56425107 hsa-miR-3187-5p 1 1 0
chr12:56424870|56425107 hsa-miR-1238-5p 0 1 0
chr12:56424870|56425107 hsa-miR-6750-5p 0 1 0
chr12:56424870|56425107 hsa-miR-6849-5p 1 0 0
chr12:56424870|56425107 hsa-miR-6822-5p 0 1 0
chr12:56424870|56425107 hsa-miR-4701-5p 0 1 0
chr12:56424870|56425107 hsa-miR-135a-2-3p 1 0 0
chr12:56424870|56425107 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:56424870|56425107
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MAEQLQCCAQVGGYRNPVFFENSAQGIQSGFSTPSAPIALSISRILSSAWTPWFPLMR
Nucleotide Sequence CTGGCTGAGCAGCTACAGTGCTGTGCCCAGGTAGGTGGTTACAGAAACCCTGTCTTTTTTGAGAATAGTGCTCAGGGTATACAATCTGGGTTTTCCACTCCCTCCGCTCCCATAGCTTTATCCATCTCTAGAATTCTGAGCTCAGCATGGACTCCGTGGTTCCCTTTGATGCGG
CircID chr12:56424870|56425107
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MFLVMSHLAQKKWRLCGQPWLSSYSAVPR
Nucleotide Sequence TTGTTTCTGGTAATGTCCCATCTAGCCCAGAAGAAGTGGAGGCTGTGTGGCCAGCCCTGGCTGAGCAGCTACAGTGCTGTGCCCAGGTAG
CircID chr12:56424870|56425107
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MLSQGWPHSLHFFWARWDITRNNGL
Nucleotide Sequence CTGCTCAGCCAGGGCTGGCCACACAGCCTCCACTTCTTCTGGGCTAGATGGGACATTACCAGAAACAATGGCCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab