CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56471493|56471824
Strand -
CircType exon
Host Gene ENSG00000176422.12;
Algorism CIRI2;
Sequence CATGCTTTCTAAGTTCTCTTTGGACAGGGCCTCAGCTGCTGCCTCAGCCTGAGTTTCAGAGAGTGTGTAGGAGTCCTGGTAATCTTGAAGCAGTTTGACCACCTCCAGATGGTTGAACTGCACAGCATCATCCAGGGGAATGTTGCCCCACCTGAGAGGAATAATGATATGATCAGGCAAAGGAGACGTGGAGAGTGGTGGTTGTATATATTTGCATGGTGGCTGGAGGGTAGGTGGAGAAGCTGTGCCCACCCTCCTCCACTTTTAGCCTATTCCTCACCTGTCCTTGGCAAAAGGATTCACTTTGCAAGCCTCGATCAGGAATTTAACAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56471493|56471824 hsa-miR-146a-5p 0 0 1
chr12:56471493|56471824 hsa-miR-146a-3p 0 0 1
chr12:56471493|56471824 hsa-miR-381-5p 0 0 1
chr12:56471493|56471824 hsa-miR-381-3p 0 0 1
chr12:56471493|56471824 hsa-miR-484 0 0 1
chr12:56471493|56471824 hsa-miR-520g-5p 0 0 1
chr12:56471493|56471824 hsa-miR-520g-3p 0 0 1
chr12:56471493|56471824 hsa-miR-520h 0 0 1
chr12:56471493|56471824 hsa-miR-527 0 0 1
chr12:56471493|56471824 hsa-miR-510-5p 0 0 1
chr12:56471493|56471824 hsa-miR-510-3p 0 0 1
chr12:56471493|56471824 hsa-miR-552-5p 0 0 1
chr12:56471493|56471824 hsa-miR-552-3p 0 0 1
chr12:56471493|56471824 hsa-miR-603 0 0 1
chr12:56471493|56471824 hsa-miR-646 0 1 1
chr12:56471493|56471824 hsa-miR-766-5p 0 0 1
chr12:56471493|56471824 hsa-miR-766-3p 0 0 1
chr12:56471493|56471824 hsa-miR-765 0 0 1
chr12:56471493|56471824 hsa-miR-300 0 0 1
chr12:56471493|56471824 hsa-miR-541-5p 0 0 1
chr12:56471493|56471824 hsa-miR-541-3p 0 0 1
chr12:56471493|56471824 hsa-miR-543 0 0 1
chr12:56471493|56471824 hsa-miR-1200 0 0 1
chr12:56471493|56471824 hsa-miR-1291 0 1 1
chr12:56471493|56471824 hsa-miR-1255a 0 0 1
chr12:56471493|56471824 hsa-miR-548n 0 0 1
chr12:56471493|56471824 hsa-miR-1266-5p 0 0 1
chr12:56471493|56471824 hsa-miR-1266-3p 0 0 1
chr12:56471493|56471824 hsa-miR-1322 0 1 1
chr12:56471493|56471824 hsa-miR-1827 0 1 1
chr12:56471493|56471824 hsa-miR-125a-3p 0 1 1
chr12:56471493|56471824 hsa-miR-486-3p 0 0 1
chr12:56471493|56471824 hsa-miR-146b-3p 0 0 1
chr12:56471493|56471824 hsa-miR-339-5p 0 1 1
chr12:56471493|56471824 hsa-miR-654-5p 0 0 1
chr12:56471493|56471824 hsa-miR-501-5p 0 1 1
chr12:56471493|56471824 hsa-miR-331-3p 0 0 1
chr12:56471493|56471824 hsa-miR-146b-5p 0 0 1
chr12:56471493|56471824 hsa-miR-518a-5p 0 0 1
chr12:56471493|56471824 hsa-miR-515-5p 0 0 1
chr12:56471493|56471824 hsa-miR-369-5p 0 0 1
chr12:56471493|56471824 hsa-miR-362-3p 0 0 1
chr12:56471493|56471824 hsa-miR-323-5p 0 0 1
chr12:56471493|56471824 hsa-miR-1255b 0 0 1
chr12:56471493|56471824 hsa-miR-500 0 0 1
chr12:56471493|56471824 hsa-miR-516b 0 0 1
chr12:56471493|56471824 hsa-miR-329 0 0 1
chr12:56471493|56471824 hsa-miR-1201 0 0 1
chr12:56471493|56471824 hsa-miR-198 0 1 0
chr12:56471493|56471824 hsa-miR-612 0 1 0
chr12:56471493|56471824 hsa-miR-1299 0 1 0
chr12:56471493|56471824 hsa-miR-3131 1 1 0
chr12:56471493|56471824 hsa-miR-3138 1 0 0
chr12:56471493|56471824 hsa-miR-4298 1 0 0
chr12:56471493|56471824 hsa-miR-4327 0 1 0
chr12:56471493|56471824 hsa-miR-3929 0 1 0
chr12:56471493|56471824 hsa-miR-3941 0 1 0
chr12:56471493|56471824 hsa-miR-4656 1 1 0
chr12:56471493|56471824 hsa-miR-4688 1 0 0
chr12:56471493|56471824 hsa-miR-5787 1 0 0
chr12:56471493|56471824 hsa-miR-6134 0 1 0
chr12:56471493|56471824 hsa-miR-12115 0 1 0
chr12:56471493|56471824 hsa-miR-143-5p 0 1 0
chr12:56471493|56471824 hsa-miR-197-3p 0 1 0
chr12:56471493|56471824 hsa-miR-7847-3p 0 1 0
chr12:56471493|56471824 hsa-miR-7160-5p 0 1 0
chr12:56471493|56471824 hsa-miR-6849-3p 1 0 0
chr12:56471493|56471824 hsa-miR-7845-5p 1 0 0
chr12:56471493|56471824 hsa-miR-3151-5p 0 1 0
chr12:56471493|56471824 hsa-miR-6821-5p 1 0 0
chr12:56471493|56471824 hsa-miR-5006-5p 1 0 0
chr12:56471493|56471824 hsa-miR-3934-3p 1 1 0
chr12:56471493|56471824 hsa-miR-6884-3p 1 1 0
chr12:56471493|56471824 hsa-miR-6784-5p 1 0 0
chr12:56471493|56471824 hsa-miR-3925-5p 0 1 0
chr12:56471493|56471824 hsa-miR-6776-3p 1 1 0
chr12:56471493|56471824 hsa-miR-516b-5p 0 1 0
chr12:56471493|56471824 hsa-miR-6804-3p 1 0 0
chr12:56471493|56471824 hsa-miR-3180-5p 1 0 0
chr12:56471493|56471824 hsa-miR-1304-5p 0 1 0
chr12:56471493|56471824 hsa-miR-500a-5p 0 1 0
chr12:56471493|56471824 hsa-miR-6746-3p 1 0 0
chr12:56471493|56471824 hsa-miR-4649-3p 0 1 0
chr12:56471493|56471824 hsa-miR-6777-3p 0 1 0
chr12:56471493|56471824 hsa-miR-3192-3p 1 0 0
chr12:56471493|56471824 hsa-miR-4639-3p 0 1 0
chr12:56471493|56471824 hsa-let-7b-3p 0 1 0
chr12:56471493|56471824 hsa-miR-1207-5p 1 0 0
chr12:56471493|56471824 hsa-miR-4763-3p 1 0 0
chr12:56471493|56471824 hsa-miR-6787-5p 1 0 0
chr12:56471493|56471824 hsa-miR-6775-5p 1 0 0
chr12:56471493|56471824 hsa-miR-6756-5p 1 0 0
chr12:56471493|56471824 hsa-miR-6851-5p 0 1 0
chr12:56471493|56471824 hsa-miR-11181-3p 0 1 0
chr12:56471493|56471824 hsa-miR-6879-5p 1 0 0
chr12:56471493|56471824 hsa-miR-6754-3p 1 0 0
chr12:56471493|56471824 hsa-miR-4632-5p 1 0 0
chr12:56471493|56471824 hsa-miR-4649-5p 1 0 0
chr12:56471493|56471824 hsa-miR-675-5p 1 0 0
chr12:56471493|56471824 hsa-miR-6795-5p 1 0 0
chr12:56471493|56471824 hsa-miR-6883-5p 0 1 0
chr12:56471493|56471824 hsa-miR-6766-5p 0 1 0
chr12:56471493|56471824 hsa-miR-6775-3p 0 1 0
chr12:56471493|56471824 hsa-miR-412-3p 0 1 0
chr12:56471493|56471824 hsa-miR-3121-5p 0 1 0
chr12:56471493|56471824 hsa-miR-5011-5p 1 1 0
chr12:56471493|56471824 hsa-miR-155-3p 0 1 0
chr12:56471493|56471824 hsa-miR-98-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:56471493|56471824
ORF Type ORF1
Protein Length 94
Nucleotide Length 282
Protein Sequence MSFRECVGVLVILKQFDHLQMVELHSIIQGNVAPPERNNDMIRQRRRGEWWLYIFAWWLEGRWRSCAHPPPLLAYSSPVLGKRIHFASLDQEFN
Nucleotide Sequence CTGAGTTTCAGAGAGTGTGTAGGAGTCCTGGTAATCTTGAAGCAGTTTGACCACCTCCAGATGGTTGAACTGCACAGCATCATCCAGGGGAATGTTGCCCCACCTGAGAGGAATAATGATATGATCAGGCAAAGGAGACGTGGAGAGTGGTGGTTGTATATATTTGCATGGTGGCTGGAGGGTAGGTGGAGAAGCTGTGCCCACCCTCCTCCACTTTTAGCCTATTCCTCACCTGTCCTTGGCAAAAGGATTCACTTTGCAAGCCTCGATCAGGAATTTAAC
CircID chr12:56471493|56471824
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MTTSRWLNCTASSRGMLPHLRGIMI
Nucleotide Sequence TTGACCACCTCCAGATGGTTGAACTGCACAGCATCATCCAGGGGAATGTTGCCCCACCTGAGAGGAATAATGATATGA
CircID chr12:56471493|56471824
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MCPPSSTFSLFLTCPWQKDSLCKPRSGI
Nucleotide Sequence CTGTGCCCACCCTCCTCCACTTTTAGCCTATTCCTCACCTGTCCTTGGCAAAAGGATTCACTTTGCAAGCCTCGATCAGGAATTTAA
CircID chr12:56471493|56471824
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MIISLFLSGGATFPWMMLCSSTIWRWSNCFKITRTPTHSLKLRLRQQLRPCPKRT
Nucleotide Sequence CTGATCATATCATTATTCCTCTCAGGTGGGGCAACATTCCCCTGGATGATGCTGTGCAGTTCAACCATCTGGAGGTGGTCAAACTGCTTCAAGATTACCAGGACTCCTACACACTCTCTGAAACTCAGGCTGAGGCAGCAGCTGAGGCCCTGTCCAAAGAGAACTTAG
CircID chr12:56471493|56471824
ORF Type ORF5
Protein Length 45
Nucleotide Length 138
Protein Sequence MQSESFCQGQVRNRLKVEEGGHSFSTYPPATMQIYTTTTLHVSFA
Nucleotide Sequence TTGCAAAGTGAATCCTTTTGCCAAGGACAGGTGAGGAATAGGCTAAAAGTGGAGGAGGGTGGGCACAGCTTCTCCACCTACCCTCCAGCCACCATGCAAATATATACAACCACCACTCTCCACGTCTCCTTTGCCTGA
CircID chr12:56471493|56471824
ORF Type ORF6
Protein Length 60
Nucleotide Length 180
Protein Sequence MPDHIIIPLRWGNIPLDDAVQFNHLEVVKLLQDYQDSYTLSETQAEAAAEALSKENLESM
Nucleotide Sequence TTGCCTGATCATATCATTATTCCTCTCAGGTGGGGCAACATTCCCCTGGATGATGCTGTGCAGTTCAACCATCTGGAGGTGGTCAAACTGCTTCAAGATTACCAGGACTCCTACACACTCTCTGAAACTCAGGCTGAGGCAGCAGCTGAGGCCCTGTCCAAAGAGAACTTAGAAAGCATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab