CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56610158|56610471
Strand -
CircType exon
Host Gene ENSG00000076108.10;
Algorism CIRI2;
Sequence GGGGACTGAAGCTGAAGTGCTCTCGGCGGACACTGTGTACCACGTTGCGGCTCAGGTACTAAGAGGAAGAAGTAAAGTAACATTAATAAAGTTGGATCCTACCATGTCTTTGGCCAGCAAAGGCATAAGCAGAACAGGCCCAGAGCAGACAATGCCAGCCTGTTGTCACTGAGCCCAAGAACGGAGTCTTGGGCAGTGGAAAGGAGTCCACTGAGCCCAAGAAAGCAGTCCTTTAAAAAAAGCTACATTACCTTGATCACTTCTGGAAATTGCTTCATCCTCTTCCCACAGGGGCCATAATACCAGGTCTCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56610158|56610471 hsa-miR-326 0 1 1
chr12:56610158|56610471 hsa-miR-346 0 0 1
chr12:56610158|56610471 hsa-miR-578 0 0 1
chr12:56610158|56610471 hsa-miR-612 0 0 1
chr12:56610158|56610471 hsa-miR-631 0 0 1
chr12:56610158|56610471 hsa-miR-632 0 1 1
chr12:56610158|56610471 hsa-miR-635 0 1 1
chr12:56610158|56610471 hsa-miR-641 0 0 1
chr12:56610158|56610471 hsa-miR-1231 0 0 1
chr12:56610158|56610471 hsa-miR-1256 0 0 1
chr12:56610158|56610471 hsa-miR-1288-5p 0 0 1
chr12:56610158|56610471 hsa-miR-1288-3p 0 0 1
chr12:56610158|56610471 hsa-miR-769-5p 0 0 1
chr12:56610158|56610471 hsa-miR-525-5p 0 0 1
chr12:56610158|56610471 hsa-miR-532-5p 0 0 1
chr12:56610158|56610471 hsa-miR-767-3p 0 0 1
chr12:56610158|56610471 hsa-miR-409-3p 0 0 1
chr12:56610158|56610471 hsa-miR-520a-5p 0 0 1
chr12:56610158|56610471 hsa-miR-330-5p 1 1 1
chr12:56610158|56610471 hsa-miR-455-3p 0 0 1
chr12:56610158|56610471 hsa-miR-128 0 0 1
chr12:56610158|56610471 hsa-miR-1285 0 0 1
chr12:56610158|56610471 hsa-miR-24 0 0 1
chr12:56610158|56610471 hsa-miR-549 0 0 1
chr12:56610158|56610471 hsa-miR-1245 0 0 1
chr12:56610158|56610471 hsa-miR-760 0 1 0
chr12:56610158|56610471 hsa-miR-3132 1 0 0
chr12:56610158|56610471 hsa-miR-3169 0 1 0
chr12:56610158|56610471 hsa-miR-4257 1 0 0
chr12:56610158|56610471 hsa-miR-4265 1 0 0
chr12:56610158|56610471 hsa-miR-4281 1 0 0
chr12:56610158|56610471 hsa-miR-4437 0 1 0
chr12:56610158|56610471 hsa-miR-4515 1 0 0
chr12:56610158|56610471 hsa-miR-4523 0 1 0
chr12:56610158|56610471 hsa-miR-4656 1 0 0
chr12:56610158|56610471 hsa-miR-4674 1 1 0
chr12:56610158|56610471 hsa-miR-4739 1 0 0
chr12:56610158|56610471 hsa-miR-5190 0 1 0
chr12:56610158|56610471 hsa-miR-6863 0 1 0
chr12:56610158|56610471 hsa-miR-103a-2-5p 1 0 0
chr12:56610158|56610471 hsa-miR-26b-3p 0 1 0
chr12:56610158|56610471 hsa-miR-6734-5p 1 0 0
chr12:56610158|56610471 hsa-miR-6840-3p 0 1 0
chr12:56610158|56610471 hsa-miR-4665-3p 1 0 0
chr12:56610158|56610471 hsa-miR-4433a-3p 1 0 0
chr12:56610158|56610471 hsa-miR-7106-5p 1 0 0
chr12:56610158|56610471 hsa-miR-6894-5p 1 0 0
chr12:56610158|56610471 hsa-miR-139-3p 1 0 0
chr12:56610158|56610471 hsa-miR-3926 0 1 0
chr12:56610158|56610471 hsa-miR-5187-5p 1 0 0
chr12:56610158|56610471 hsa-miR-6089 1 0 0
chr12:56610158|56610471 hsa-miR-24-3p 0 1 0
chr12:56610158|56610471 hsa-miR-6762-3p 0 1 0
chr12:56610158|56610471 hsa-miR-3605-5p 0 1 0
chr12:56610158|56610471 hsa-miR-4697-3p 0 1 0
chr12:56610158|56610471 hsa-miR-6829-5p 1 0 0
chr12:56610158|56610471 hsa-miR-6735-3p 0 1 0
chr12:56610158|56610471 hsa-miR-5088-5p 0 1 0
chr12:56610158|56610471 hsa-miR-3944-3p 1 0 0
chr12:56610158|56610471 hsa-miR-1266-3p 0 1 0
chr12:56610158|56610471 hsa-miR-3616-3p 0 1 0
chr12:56610158|56610471 hsa-miR-3190-5p 0 1 0
chr12:56610158|56610471 hsa-miR-6828-3p 0 1 0
chr12:56610158|56610471 hsa-miR-4778-3p 1 1 0
chr12:56610158|56610471 hsa-miR-216a-3p 0 1 0
chr12:56610158|56610471 hsa-miR-3160-5p 0 1 0
chr12:56610158|56610471 hsa-miR-6890-3p 0 1 0
chr12:56610158|56610471 hsa-miR-6509-3p 0 1 0
chr12:56610158|56610471 hsa-miR-6778-5p 1 1 0
chr12:56610158|56610471 hsa-miR-7107-5p 1 0 0
chr12:56610158|56610471 hsa-miR-6774-5p 0 1 0
chr12:56610158|56610471 hsa-miR-3620-5p 1 0 0
chr12:56610158|56610471 hsa-miR-5196-5p 1 1 0
chr12:56610158|56610471 hsa-miR-939-5p 1 0 0
chr12:56610158|56610471 hsa-miR-6731-5p 1 0 0
chr12:56610158|56610471 hsa-miR-7151-3p 0 1 0
chr12:56610158|56610471 hsa-miR-324-3p 0 1 0
chr12:56610158|56610471 hsa-miR-4646-5p 1 1 0
chr12:56610158|56610471 hsa-miR-7107-3p 0 1 0
chr12:56610158|56610471 hsa-miR-10400-3p 0 1 0
chr12:56610158|56610471 hsa-miR-103a-1-5p 1 0 0
chr12:56610158|56610471 hsa-miR-4659b-3p 0 1 0
chr12:56610158|56610471 hsa-miR-4799-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:56610158|56610471
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MLSLSPRTESWAVERSPLSPRKQSFKKSYITLITSGNCFILFPQGP
Nucleotide Sequence CTGTTGTCACTGAGCCCAAGAACGGAGTCTTGGGCAGTGGAAAGGAGTCCACTGAGCCCAAGAAAGCAGTCCTTTAAAAAAAGCTACATTACCTTGATCACTTCTGGAAATTGCTTCATCCTCTTCCCACAGGGGCCATAA
CircID chr12:56610158|56610471
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MDPTMSLASKGISRTGPEQTMPACCH
Nucleotide Sequence TTGGATCCTACCATGTCTTTGGCCAGCAAAGGCATAAGCAGAACAGGCCCAGAGCAGACAATGCCAGCCTGTTGTCACTGA
CircID chr12:56610158|56610471
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MLLYFFLLVPEPQRGTQCPPRALQLQS
Nucleotide Sequence ATGTTACTTTACTTCTTCCTCTTAGTACCTGAGCCGCAACGTGGTACACAGTGTCCGCCGAGAGCACTTCAGCTTCAGTCC
CircID chr12:56610158|56610471
ORF Type ORF4
Protein Length 45
Nucleotide Length 138
Protein Sequence MGSVDSFPLPKTPFLGSVTTGWHCLLWACSAYAFAGQRHGRIQLY
Nucleotide Sequence TTGGGCTCAGTGGACTCCTTTCCACTGCCCAAGACTCCGTTCTTGGGCTCAGTGACAACAGGCTGGCATTGTCTGCTCTGGGCCTGTTCTGCTTATGCCTTTGCTGGCCAAAGACATGGTAGGATCCAACTTTATTAA
CircID chr12:56610158|56610471
ORF Type ORF5
Protein Length 46
Nucleotide Length 141
Protein Sequence MVLWPLWEEDEAISRSDQGNVAFFKGLLSWAQWTPFHCPRLRSWAQ
Nucleotide Sequence CTGGTATTATGGCCCCTGTGGGAAGAGGATGAAGCAATTTCCAGAAGTGATCAAGGTAATGTAGCTTTTTTTAAAGGACTGCTTTCTTGGGCTCAGTGGACTCCTTTCCACTGCCCAAGACTCCGTTCTTGGGCTCAGTGA
CircID chr12:56610158|56610471
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MLMPLLAKDMVGSNFINVTLLLPLST
Nucleotide Sequence CTGCTTATGCCTTTGCTGGCCAAAGACATGGTAGGATCCAACTTTATTAATGTTACTTTACTTCTTCCTCTTAGTACCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab