CircRNA Information

General Information
circRNA Basic Information
CircID chr12:56765828|56766144
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence AAAATCAGGGTTGGGGCAGGAAAGCTCATGCAGAGAGGTTCTTGGAAAGAAAGAAAAGGAAAGGTGTCAGGCCTCTGAGCCCAAGCTAAGCCATCACATCCCCTGTGACCTGCATGTATACATCCAGATGGCCTGAAGCAACTGAAGATCCACAAAAGAAGTGAAAATAGCCTCAACTGATGACATTCCACCACTGTGATTTGTTCCTGCCCCACATTAACTGAGTGATTAACTTCGTGAAATTCCTTCTCCTGGCTCAGAAGCTCCCCCACTGAGCACCTTATGACCCCCACCCCTGCCTGCAAGAGAAAAACCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:56765828|56766144 hsa-miR-18a-5p 0 0 1
chr12:56765828|56766144 hsa-miR-18a-3p 0 0 1
chr12:56765828|56766144 hsa-miR-27a-5p 0 0 1
chr12:56765828|56766144 hsa-miR-27a-3p 0 0 1
chr12:56765828|56766144 hsa-miR-27b-5p 0 0 1
chr12:56765828|56766144 hsa-miR-27b-3p 0 0 1
chr12:56765828|56766144 hsa-miR-206 0 0 1
chr12:56765828|56766144 hsa-miR-34b-5p 0 0 1
chr12:56765828|56766144 hsa-miR-34b-3p 0 0 1
chr12:56765828|56766144 hsa-miR-135b-5p 0 0 1
chr12:56765828|56766144 hsa-miR-135b-3p 0 0 1
chr12:56765828|56766144 hsa-miR-18b-5p 0 0 1
chr12:56765828|56766144 hsa-miR-18b-3p 0 0 1
chr12:56765828|56766144 hsa-miR-569 0 0 1
chr12:56765828|56766144 hsa-miR-608 1 0 1
chr12:56765828|56766144 hsa-miR-613 0 0 1
chr12:56765828|56766144 hsa-miR-625-5p 0 0 1
chr12:56765828|56766144 hsa-miR-625-3p 0 0 1
chr12:56765828|56766144 hsa-miR-635 0 0 1
chr12:56765828|56766144 hsa-miR-657 0 0 1
chr12:56765828|56766144 hsa-miR-665 0 0 1
chr12:56765828|56766144 hsa-miR-873-5p 0 0 1
chr12:56765828|56766144 hsa-miR-873-3p 0 0 1
chr12:56765828|56766144 hsa-miR-920 0 1 1
chr12:56765828|56766144 hsa-miR-935 0 0 1
chr12:56765828|56766144 hsa-miR-939-5p 0 0 1
chr12:56765828|56766144 hsa-miR-939-3p 0 0 1
chr12:56765828|56766144 hsa-miR-940 0 0 1
chr12:56765828|56766144 hsa-miR-1304-5p 0 0 1
chr12:56765828|56766144 hsa-miR-1304-3p 0 0 1
chr12:56765828|56766144 hsa-miR-1275 0 1 1
chr12:56765828|56766144 hsa-miR-1252-5p 0 0 1
chr12:56765828|56766144 hsa-miR-1252-3p 0 0 1
chr12:56765828|56766144 hsa-miR-491-5p 0 0 1
chr12:56765828|56766144 hsa-miR-486-3p 1 0 1
chr12:56765828|56766144 hsa-miR-485-5p 0 0 1
chr12:56765828|56766144 hsa-miR-299-3p 0 0 1
chr12:56765828|56766144 hsa-miR-513a-5p 0 1 1
chr12:56765828|56766144 hsa-miR-556-5p 0 0 1
chr12:56765828|56766144 hsa-miR-1207-5p 1 0 1
chr12:56765828|56766144 hsa-miR-324-3p 0 0 1
chr12:56765828|56766144 hsa-miR-548b-3p 0 1 1
chr12:56765828|56766144 hsa-miR-128 0 0 1
chr12:56765828|56766144 hsa-miR-220c 0 0 1
chr12:56765828|56766144 hsa-miR-135a 0 0 1
chr12:56765828|56766144 hsa-miR-1 0 0 1
chr12:56765828|56766144 hsa-miR-24 0 0 1
chr12:56765828|56766144 hsa-miR-623 1 0 0
chr12:56765828|56766144 hsa-miR-762 1 0 0
chr12:56765828|56766144 hsa-miR-1268a 1 0 0
chr12:56765828|56766144 hsa-miR-1913 0 1 0
chr12:56765828|56766144 hsa-miR-3141 1 0 0
chr12:56765828|56766144 hsa-miR-4298 1 0 0
chr12:56765828|56766144 hsa-miR-4303 0 1 0
chr12:56765828|56766144 hsa-miR-3665 1 0 0
chr12:56765828|56766144 hsa-miR-3937 1 0 0
chr12:56765828|56766144 hsa-miR-3945 1 0 0
chr12:56765828|56766144 hsa-miR-1268b 1 0 0
chr12:56765828|56766144 hsa-miR-4437 0 1 0
chr12:56765828|56766144 hsa-miR-4447 0 1 0
chr12:56765828|56766144 hsa-miR-4453 0 1 0
chr12:56765828|56766144 hsa-miR-4458 1 0 0
chr12:56765828|56766144 hsa-miR-3135b 1 0 0
chr12:56765828|56766144 hsa-miR-4514 1 1 0
chr12:56765828|56766144 hsa-miR-4516 1 0 0
chr12:56765828|56766144 hsa-miR-3975 0 1 0
chr12:56765828|56766144 hsa-miR-4651 1 1 0
chr12:56765828|56766144 hsa-miR-4656 1 0 0
chr12:56765828|56766144 hsa-miR-4673 1 0 0
chr12:56765828|56766144 hsa-miR-4688 1 0 0
chr12:56765828|56766144 hsa-miR-4692 1 1 0
chr12:56765828|56766144 hsa-miR-4706 1 0 0
chr12:56765828|56766144 hsa-miR-4734 1 0 0
chr12:56765828|56766144 hsa-miR-4752 0 1 0
chr12:56765828|56766144 hsa-miR-5090 1 0 0
chr12:56765828|56766144 hsa-miR-5572 1 0 0
chr12:56765828|56766144 hsa-miR-5706 0 1 0
chr12:56765828|56766144 hsa-miR-5787 1 0 0
chr12:56765828|56766144 hsa-miR-6124 1 0 0
chr12:56765828|56766144 hsa-miR-6132 1 0 0
chr12:56765828|56766144 hsa-miR-7150 1 0 0
chr12:56765828|56766144 hsa-miR-8060 1 0 0
chr12:56765828|56766144 hsa-miR-8077 1 0 0
chr12:56765828|56766144 hsa-miR-4433b-3p 1 0 0
chr12:56765828|56766144 hsa-miR-6747-5p 1 0 0
chr12:56765828|56766144 hsa-miR-4433a-3p 1 0 0
chr12:56765828|56766144 hsa-miR-6765-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6894-5p 1 0 0
chr12:56765828|56766144 hsa-miR-224-5p 0 1 0
chr12:56765828|56766144 hsa-miR-3622a-5p 1 0 0
chr12:56765828|56766144 hsa-miR-1227-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6807-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6757-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6880-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6746-5p 1 0 0
chr12:56765828|56766144 hsa-miR-4722-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6890-5p 1 0 0
chr12:56765828|56766144 hsa-miR-24-3p 1 0 0
chr12:56765828|56766144 hsa-miR-6741-5p 1 0 0
chr12:56765828|56766144 hsa-miR-3622b-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6806-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6721-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6742-5p 1 0 0
chr12:56765828|56766144 hsa-miR-3151-5p 1 1 0
chr12:56765828|56766144 hsa-miR-3180-3p 1 0 0
chr12:56765828|56766144 hsa-miR-6796-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6732-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6798-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6760-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6881-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6782-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6728-3p 1 0 0
chr12:56765828|56766144 hsa-miR-7109-3p 1 0 0
chr12:56765828|56766144 hsa-miR-615-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6786-5p 1 0 0
chr12:56765828|56766144 hsa-miR-1229-5p 1 0 0
chr12:56765828|56766144 hsa-miR-193b-5p 1 0 0
chr12:56765828|56766144 hsa-miR-4640-5p 1 0 0
chr12:56765828|56766144 hsa-miR-885-3p 1 0 0
chr12:56765828|56766144 hsa-miR-1228-5p 1 0 0
chr12:56765828|56766144 hsa-miR-92b-5p 1 0 0
chr12:56765828|56766144 hsa-miR-4787-5p 1 0 0
chr12:56765828|56766144 hsa-miR-149-3p 1 0 0
chr12:56765828|56766144 hsa-miR-6824-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6800-5p 1 0 0
chr12:56765828|56766144 hsa-miR-194-3p 0 1 0
chr12:56765828|56766144 hsa-miR-7112-5p 1 0 0
chr12:56765828|56766144 hsa-miR-423-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6730-3p 1 0 0
chr12:56765828|56766144 hsa-miR-6793-3p 0 1 0
chr12:56765828|56766144 hsa-miR-4750-5p 1 0 0
chr12:56765828|56766144 hsa-miR-216a-3p 0 1 0
chr12:56765828|56766144 hsa-miR-3160-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6792-5p 1 0 0
chr12:56765828|56766144 hsa-miR-4649-3p 1 0 0
chr12:56765828|56766144 hsa-miR-1296-3p 0 1 0
chr12:56765828|56766144 hsa-miR-3124-3p 0 1 0
chr12:56765828|56766144 hsa-miR-888-3p 1 0 0
chr12:56765828|56766144 hsa-miR-431-5p 1 0 0
chr12:56765828|56766144 hsa-miR-10400-5p 1 0 0
chr12:56765828|56766144 hsa-miR-4763-3p 1 1 0
chr12:56765828|56766144 hsa-miR-6769b-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6787-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6816-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6893-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6775-5p 1 0 0
chr12:56765828|56766144 hsa-miR-1343-5p 1 0 0
chr12:56765828|56766144 hsa-miR-3180 1 0 0
chr12:56765828|56766144 hsa-miR-5001-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6726-5p 0 1 0
chr12:56765828|56766144 hsa-miR-6737-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6743-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6752-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6756-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6769a-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6803-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6819-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6842-5p 1 0 0
chr12:56765828|56766144 hsa-miR-7110-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6722-3p 1 1 0
chr12:56765828|56766144 hsa-miR-6751-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6774-5p 0 1 0
chr12:56765828|56766144 hsa-miR-6808-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6879-5p 1 0 0
chr12:56765828|56766144 hsa-miR-7111-5p 1 0 0
chr12:56765828|56766144 hsa-miR-5196-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6780b-5p 1 0 0
chr12:56765828|56766144 hsa-miR-10396a-5p 1 0 0
chr12:56765828|56766144 hsa-miR-10396b-5p 1 0 0
chr12:56765828|56766144 hsa-miR-1237-5p 1 0 0
chr12:56765828|56766144 hsa-miR-1909-3p 1 1 0
chr12:56765828|56766144 hsa-miR-328-5p 1 1 0
chr12:56765828|56766144 hsa-miR-4649-5p 1 0 0
chr12:56765828|56766144 hsa-miR-4725-3p 1 0 0
chr12:56765828|56766144 hsa-miR-4745-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6738-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6848-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6858-5p 1 0 0
chr12:56765828|56766144 hsa-miR-4436b-3p 1 0 0
chr12:56765828|56766144 hsa-miR-4723-5p 1 1 0
chr12:56765828|56766144 hsa-miR-6831-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6511a-5p 1 0 0
chr12:56765828|56766144 hsa-miR-6511b-5p 1 1 0
chr12:56765828|56766144 hsa-miR-4665-5p 1 1 0
chr12:56765828|56766144 hsa-miR-4472 0 1 0
chr12:56765828|56766144 hsa-miR-6766-5p 0 1 0
chr12:56765828|56766144 hsa-miR-3184-5p 1 0 0
chr12:56765828|56766144 hsa-miR-4723-3p 1 1 0
chr12:56765828|56766144 hsa-miR-6769b-3p 1 0 0
chr12:56765828|56766144 hsa-miR-1234-3p 1 0 0
chr12:56765828|56766144 hsa-miR-7-1-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:56765828|56766144
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MGQESSCREVLGKKEKERCQASEPKLSHHIPCDLHVYIQMA
Nucleotide Sequence TTGGGGCAGGAAAGCTCATGCAGAGAGGTTCTTGGAAAGAAAGAAAAGGAAAGGTGTCAGGCCTCTGAGCCCAAGCTAAGCCATCACATCCCCTGTGACCTGCATGTATACATCCAGATGGCCTGA
CircID chr12:56765828|56766144
ORF Type ORF2
Protein Length 101
Nucleotide Length 303
Protein Sequence MQAGVGVIRCSVGELLSQEKEFHEVNHSVNVGQEQITVVECHQLRLFSLLLWIFSCFRPSGCIHAGHRGCDGLAWAQRPDTFPFLSFQEPLCMSFPAPTLI
Nucleotide Sequence TTGCAGGCAGGGGTGGGGGTCATAAGGTGCTCAGTGGGGGAGCTTCTGAGCCAGGAGAAGGAATTTCACGAAGTTAATCACTCAGTTAATGTGGGGCAGGAACAAATCACAGTGGTGGAATGTCATCAGTTGAGGCTATTTTCACTTCTTTTGTGGATCTTCAGTTGCTTCAGGCCATCTGGATGTATACATGCAGGTCACAGGGGATGTGATGGCTTAGCTTGGGCTCAGAGGCCTGACACCTTTCCTTTTCTTTCTTTCCAAGAACCTCTCTGCATGAGCTTTCCTGCCCCAACCCTGATT
CircID chr12:56765828|56766144
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MSSVEAIFTSFVDLQLLQAIWMYTCRSQGM
Nucleotide Sequence ATGTCATCAGTTGAGGCTATTTTCACTTCTTTTGTGGATCTTCAGTTGCTTCAGGCCATCTGGATGTATACATGCAGGTCACAGGGGATGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab