CircRNA Information

General Information
circRNA Basic Information
CircID chr12:57096105|57096211
Strand -
CircType exon
Host Gene ENSG00000166888.9;
Algorism CIRI2;
Sequence CCAATATCCTCTATCCCTGGCCTCTAGTGTAAATGTGTCTGTATGTTCCTGCCTATCCGTCCTAGGCCCTGGGTCAGAATGGGCGGAGAAGCCTTCCATGCCCTAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:57096105|57096211 hsa-miR-184 0 0 1
chr12:57096105|57096211 hsa-miR-1296-5p 0 0 1
chr12:57096105|57096211 hsa-miR-1296-3p 0 0 1
chr12:57096105|57096211 hsa-miR-877-5p 0 0 1
chr12:57096105|57096211 hsa-miR-877-3p 0 0 1
chr12:57096105|57096211 hsa-miR-873-5p 0 0 1
chr12:57096105|57096211 hsa-miR-873-3p 0 0 1
chr12:57096105|57096211 hsa-miR-940 0 0 1
chr12:57096105|57096211 hsa-miR-1185 0 0 1
chr12:57096105|57096211 hsa-miR-1182 0 1 0
chr12:57096105|57096211 hsa-miR-2861 1 0 0
chr12:57096105|57096211 hsa-miR-3135a 0 1 0
chr12:57096105|57096211 hsa-miR-3141 1 0 0
chr12:57096105|57096211 hsa-miR-3147 1 0 0
chr12:57096105|57096211 hsa-miR-3166 1 0 0
chr12:57096105|57096211 hsa-miR-4260 0 1 0
chr12:57096105|57096211 hsa-miR-3918 0 1 0
chr12:57096105|57096211 hsa-miR-1268b 1 0 0
chr12:57096105|57096211 hsa-miR-4476 1 0 0
chr12:57096105|57096211 hsa-miR-4505 1 0 0
chr12:57096105|57096211 hsa-miR-2392 1 0 0
chr12:57096105|57096211 hsa-miR-4514 1 0 0
chr12:57096105|57096211 hsa-miR-1587 1 0 0
chr12:57096105|57096211 hsa-miR-4656 1 0 0
chr12:57096105|57096211 hsa-miR-4688 1 0 0
chr12:57096105|57096211 hsa-miR-4739 1 0 0
chr12:57096105|57096211 hsa-miR-6860 1 0 0
chr12:57096105|57096211 hsa-miR-1227-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6089 1 0 0
chr12:57096105|57096211 hsa-miR-6757-5p 1 0 0
chr12:57096105|57096211 hsa-miR-4722-5p 1 0 0
chr12:57096105|57096211 hsa-miR-3622b-5p 0 1 0
chr12:57096105|57096211 hsa-miR-6806-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6721-5p 1 0 0
chr12:57096105|57096211 hsa-miR-3605-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6732-5p 1 0 0
chr12:57096105|57096211 hsa-miR-5006-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6815-3p 0 1 0
chr12:57096105|57096211 hsa-miR-5088-5p 1 0 0
chr12:57096105|57096211 hsa-miR-1226-5p 1 0 0
chr12:57096105|57096211 hsa-miR-4640-5p 1 0 0
chr12:57096105|57096211 hsa-miR-92b-5p 1 0 0
chr12:57096105|57096211 hsa-miR-4743-5p 1 0 0
chr12:57096105|57096211 hsa-miR-149-3p 1 0 0
chr12:57096105|57096211 hsa-miR-6781-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6866-5p 1 1 0
chr12:57096105|57096211 hsa-miR-7112-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6895-5p 1 0 0
chr12:57096105|57096211 hsa-miR-423-5p 1 0 0
chr12:57096105|57096211 hsa-miR-7113-5p 0 1 0
chr12:57096105|57096211 hsa-miR-6767-5p 1 0 0
chr12:57096105|57096211 hsa-miR-4750-3p 0 1 0
chr12:57096105|57096211 hsa-miR-628-5p 1 0 0
chr12:57096105|57096211 hsa-miR-1207-5p 1 0 0
chr12:57096105|57096211 hsa-miR-4763-3p 1 0 0
chr12:57096105|57096211 hsa-miR-6787-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6893-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6775-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6743-5p 1 0 0
chr12:57096105|57096211 hsa-miR-7107-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6780a-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6797-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6808-5p 1 1 0
chr12:57096105|57096211 hsa-miR-6879-5p 1 0 0
chr12:57096105|57096211 hsa-miR-1915-3p 1 0 0
chr12:57096105|57096211 hsa-miR-3620-5p 1 0 0
chr12:57096105|57096211 hsa-miR-642b-3p 1 1 0
chr12:57096105|57096211 hsa-miR-6836-5p 1 0 0
chr12:57096105|57096211 hsa-miR-449c-5p 1 0 0
chr12:57096105|57096211 hsa-miR-4649-5p 1 0 0
chr12:57096105|57096211 hsa-miR-4685-5p 1 1 0
chr12:57096105|57096211 hsa-miR-4726-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6735-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6738-5p 1 0 0
chr12:57096105|57096211 hsa-miR-4436b-3p 1 0 0
chr12:57096105|57096211 hsa-miR-6845-5p 1 0 0
chr12:57096105|57096211 hsa-miR-1910-3p 1 0 0
chr12:57096105|57096211 hsa-miR-3198 1 0 0
chr12:57096105|57096211 hsa-miR-6876-5p 1 0 0
chr12:57096105|57096211 hsa-miR-6837-5p 0 1 0
chr12:57096105|57096211 hsa-miR-6764-5p 0 1 0
chr12:57096105|57096211 hsa-miR-642a-3p 1 1 0
chr12:57096105|57096211 hsa-miR-2682-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:57096105|57096211
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MASSVNVSVCSCLSVLGPGSEWAEKPSMP
Nucleotide Sequence CTGGCCTCTAGTGTAAATGTGTCTGTATGTTCCTGCCTATCCGTCCTAGGCCCTGGGTCAGAATGGGCGGAGAAGCCTTCCATGCCCTAA
CircID chr12:57096105|57096211
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MEGFSAHSDPGPRTDRQEHTDTFTLEARDRGYW
Nucleotide Sequence ATGGAAGGCTTCTCCGCCCATTCTGACCCAGGGCCTAGGACGGATAGGCAGGAACATACAGACACATTTACACTAGAGGCCAGGGATAGAGGATATTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab