CircRNA Information

General Information
circRNA Basic Information
CircID chr12:57193043|57193248
Strand -
CircType exon
Host Gene ENSG00000123384.12;
Algorism CIRI2;
Sequence ATGCTCCAGCCCAGCCCCCCAAAGCCTTTTGCCAAGAAGACGCTGATGATGACCTCAGCTCCCCGGGGGAGGAGGCGTGGGCACTGGGGCCCACAGCGCTGGCTCAGAAAGCTCCCTCCACCTCCCTCCCCAGCGGTGAATTCCTCTTGCCGAGCACAAGATGAGTTTGAGTGTGCCAATGGCGAGTGCATCAACTTCAGCCTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:57193043|57193248 hsa-miR-31-5p 0 0 1
chr12:57193043|57193248 hsa-miR-31-3p 0 0 1
chr12:57193043|57193248 hsa-miR-96-5p 0 0 1
chr12:57193043|57193248 hsa-miR-96-3p 0 0 1
chr12:57193043|57193248 hsa-miR-182-5p 0 0 1
chr12:57193043|57193248 hsa-miR-182-3p 0 0 1
chr12:57193043|57193248 hsa-miR-484 0 0 1
chr12:57193043|57193248 hsa-miR-581 0 0 1
chr12:57193043|57193248 hsa-miR-1271-5p 0 0 1
chr12:57193043|57193248 hsa-miR-1271-3p 0 0 1
chr12:57193043|57193248 hsa-miR-888-5p 0 0 1
chr12:57193043|57193248 hsa-miR-888-3p 0 0 1
chr12:57193043|57193248 hsa-miR-920 0 1 1
chr12:57193043|57193248 hsa-miR-939-5p 0 0 1
chr12:57193043|57193248 hsa-miR-939-3p 0 0 1
chr12:57193043|57193248 hsa-miR-1275 0 0 1
chr12:57193043|57193248 hsa-miR-1281 0 1 1
chr12:57193043|57193248 hsa-miR-1321 0 1 1
chr12:57193043|57193248 hsa-miR-1825 0 1 1
chr12:57193043|57193248 hsa-miR-296-5p 0 0 1
chr12:57193043|57193248 hsa-miR-423-3p 0 0 1
chr12:57193043|57193248 hsa-miR-371-5p 0 0 1
chr12:57193043|57193248 hsa-miR-218 0 0 1
chr12:57193043|57193248 hsa-miR-608 1 0 0
chr12:57193043|57193248 hsa-miR-637 1 0 0
chr12:57193043|57193248 hsa-miR-762 0 1 0
chr12:57193043|57193248 hsa-miR-3147 1 0 0
chr12:57193043|57193248 hsa-miR-4322 0 1 0
chr12:57193043|57193248 hsa-miR-3916 0 1 0
chr12:57193043|57193248 hsa-miR-3929 0 1 0
chr12:57193043|57193248 hsa-miR-378g 0 1 0
chr12:57193043|57193248 hsa-miR-3135b 0 1 0
chr12:57193043|57193248 hsa-miR-4492 0 1 0
chr12:57193043|57193248 hsa-miR-4505 0 1 0
chr12:57193043|57193248 hsa-miR-4510 0 1 0
chr12:57193043|57193248 hsa-miR-4533 1 0 0
chr12:57193043|57193248 hsa-miR-1587 0 1 0
chr12:57193043|57193248 hsa-miR-4656 1 0 0
chr12:57193043|57193248 hsa-miR-4669 1 0 0
chr12:57193043|57193248 hsa-miR-4706 1 0 0
chr12:57193043|57193248 hsa-miR-4739 1 1 0
chr12:57193043|57193248 hsa-miR-5698 1 0 0
chr12:57193043|57193248 hsa-miR-5787 0 1 0
chr12:57193043|57193248 hsa-miR-6085 0 1 0
chr12:57193043|57193248 hsa-miR-6090 1 0 0
chr12:57193043|57193248 hsa-miR-6127 1 1 0
chr12:57193043|57193248 hsa-miR-6129 0 1 0
chr12:57193043|57193248 hsa-miR-6130 0 1 0
chr12:57193043|57193248 hsa-miR-6133 0 1 0
chr12:57193043|57193248 hsa-miR-8089 1 1 0
chr12:57193043|57193248 hsa-miR-12114 0 1 0
chr12:57193043|57193248 hsa-miR-134-3p 0 1 0
chr12:57193043|57193248 hsa-miR-6749-3p 0 1 0
chr12:57193043|57193248 hsa-miR-4731-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6825-5p 1 1 0
chr12:57193043|57193248 hsa-miR-6799-5p 1 1 0
chr12:57193043|57193248 hsa-miR-6807-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6880-5p 0 1 0
chr12:57193043|57193248 hsa-miR-7160-5p 0 1 0
chr12:57193043|57193248 hsa-miR-4655-5p 1 0 0
chr12:57193043|57193248 hsa-miR-122-3p 0 1 0
chr12:57193043|57193248 hsa-miR-6852-5p 0 1 0
chr12:57193043|57193248 hsa-miR-1229-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6771-5p 1 0 0
chr12:57193043|57193248 hsa-miR-149-3p 1 1 0
chr12:57193043|57193248 hsa-miR-6824-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6872-3p 0 1 0
chr12:57193043|57193248 hsa-miR-3160-5p 0 1 0
chr12:57193043|57193248 hsa-miR-1178-3p 0 1 0
chr12:57193043|57193248 hsa-miR-5587-3p 0 1 0
chr12:57193043|57193248 hsa-miR-4738-5p 0 1 0
chr12:57193043|57193248 hsa-miR-1207-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6769b-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6787-5p 1 0 0
chr12:57193043|57193248 hsa-miR-1343-5p 1 0 0
chr12:57193043|57193248 hsa-miR-5001-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6726-5p 1 1 0
chr12:57193043|57193248 hsa-miR-6752-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6756-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6803-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6813-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6819-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6851-5p 1 0 0
chr12:57193043|57193248 hsa-miR-1249-5p 1 1 0
chr12:57193043|57193248 hsa-miR-6763-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6797-5p 1 1 0
chr12:57193043|57193248 hsa-miR-3620-5p 0 1 0
chr12:57193043|57193248 hsa-miR-4728-5p 1 1 0
chr12:57193043|57193248 hsa-miR-328-5p 1 1 0
chr12:57193043|57193248 hsa-miR-4649-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6777-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6795-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6846-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6848-5p 1 1 0
chr12:57193043|57193248 hsa-miR-6883-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6889-5p 1 1 0
chr12:57193043|57193248 hsa-miR-4723-5p 1 0 0
chr12:57193043|57193248 hsa-miR-6885-5p 0 1 0
chr12:57193043|57193248 hsa-miR-1199-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6773-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6791-3p 0 1 0
chr12:57193043|57193248 hsa-miR-4700-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6785-5p 0 1 0
chr12:57193043|57193248 hsa-miR-4667-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6724-5p 0 1 0
chr12:57193043|57193248 hsa-miR-6829-3p 0 1 0
chr12:57193043|57193248 hsa-miR-6859-5p 0 1 0
chr12:57193043|57193248 hsa-miR-4315 0 1 0
chr12:57193043|57193248 hsa-miR-5582-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:57193043|57193248
ORF Type ORF1
Protein Length 68
Nucleotide Length 204
Protein Sequence MLQPSPPKPFAKKTLMMTSAPRGRRRGHWGPQRWLRKLPPPPSPAVNSSCRAQDEFECANGECINFSL
Nucleotide Sequence ATGCTCCAGCCCAGCCCCCCAAAGCCTTTTGCCAAGAAGACGCTGATGATGACCTCAGCTCCCCGGGGGAGGAGGCGTGGGCACTGGGGCCCACAGCGCTGGCTCAGAAAGCTCCCTCCACCTCCCTCCCCAGCGGTGAATTCCTCTTGCCGAGCACAAGATGAGTTTGAGTGTGCCAATGGCGAGTGCATCAACTTCAGCCTG
CircID chr12:57193043|57193248
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MGPTALAQKAPSTSLPSGEFLLPSTR
Nucleotide Sequence CTGGGGCCCACAGCGCTGGCTCAGAAAGCTCCCTCCACCTCCCTCCCCAGCGGTGAATTCCTCTTGCCGAGCACAAGATGA
CircID chr12:57193043|57193248
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MKLMHSPLAHSNSSCARQEEFTAGEGGGGSFLSQRCGPQCPRLLPRGAEVIISVFLAKGFGGLGWS
Nucleotide Sequence CTGAAGTTGATGCACTCGCCATTGGCACACTCAAACTCATCTTGTGCTCGGCAAGAGGAATTCACCGCTGGGGAGGGAGGTGGAGGGAGCTTTCTGAGCCAGCGCTGTGGGCCCCAGTGCCCACGCCTCCTCCCCCGGGGAGCTGAGGTCATCATCAGCGTCTTCTTGGCAAAAGGCTTTGGGGGGCTGGGCTGGAGC
CircID chr12:57193043|57193248
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MCSARGIHRWGGRWRELSEPALWAPVPTPPPPGS
Nucleotide Sequence TTGTGCTCGGCAAGAGGAATTCACCGCTGGGGAGGGAGGTGGAGGGAGCTTTCTGAGCCAGCGCTGTGGGCCCCAGTGCCCACGCCTCCTCCCCCGGGGAGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab