CircRNA Information

General Information
circRNA Basic Information
CircID chr12:57193625|57193941
Strand -
CircType exon
Host Gene ENSG00000123384.12;
Algorism CIRI2;
Sequence ATGCTGTGGTGCAACGGGGCCGACGACTGTGGGGATGGCTCTGACGAGATCCCTTGCAACAGTGAGTGAGGCGCACTGGCATAACCCATCTGTACCTCAGTTCCTGCCCCACCCCTCCCTGGCCAAGCTTTGTCCCTGGGCCCCGTGGTGTCTGGTTCAAGGCACTCTGTGACAGGCCAGGGCAGGTGCTGTGGGCCAGGAGCTCTGTCCTGCGTCCTTCTGGCCCCCACAGAGAAAACTCTGGCCTGACGATACGGGGCGGGCACTGTTCTAGAGACAGCCTGTGGTGTGGGCGAGTTCCGCTGCCGGGACGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:57193625|57193941 hsa-let-7b-5p 0 0 1
chr12:57193625|57193941 hsa-let-7b-3p 0 0 1
chr12:57193625|57193941 hsa-let-7c-5p 0 0 1
chr12:57193625|57193941 hsa-let-7c-3p 0 0 1
chr12:57193625|57193941 hsa-let-7d-5p 0 0 1
chr12:57193625|57193941 hsa-let-7d-3p 0 0 1
chr12:57193625|57193941 hsa-let-7e-5p 0 0 1
chr12:57193625|57193941 hsa-let-7e-3p 0 0 1
chr12:57193625|57193941 hsa-miR-98-5p 0 0 1
chr12:57193625|57193941 hsa-miR-98-3p 0 0 1
chr12:57193625|57193941 hsa-let-7g-5p 0 0 1
chr12:57193625|57193941 hsa-let-7g-3p 0 0 1
chr12:57193625|57193941 hsa-let-7i-5p 0 0 1
chr12:57193625|57193941 hsa-let-7i-3p 0 0 1
chr12:57193625|57193941 hsa-miR-202-5p 0 0 1
chr12:57193625|57193941 hsa-miR-202-3p 0 0 1
chr12:57193625|57193941 hsa-miR-519e-5p 0 0 1
chr12:57193625|57193941 hsa-miR-519e-3p 0 0 1
chr12:57193625|57193941 hsa-miR-588 0 0 1
chr12:57193625|57193941 hsa-miR-593-5p 0 0 1
chr12:57193625|57193941 hsa-miR-593-3p 0 0 1
chr12:57193625|57193941 hsa-miR-608 0 1 1
chr12:57193625|57193941 hsa-miR-626 0 0 1
chr12:57193625|57193941 hsa-miR-874-5p 0 0 1
chr12:57193625|57193941 hsa-miR-874-3p 0 0 1
chr12:57193625|57193941 hsa-miR-873-5p 0 0 1
chr12:57193625|57193941 hsa-miR-873-3p 0 0 1
chr12:57193625|57193941 hsa-miR-1208 0 0 1
chr12:57193625|57193941 hsa-miR-1286 0 0 1
chr12:57193625|57193941 hsa-miR-1247-5p 0 0 1
chr12:57193625|57193941 hsa-miR-1247-3p 0 0 1
chr12:57193625|57193941 hsa-miR-1251-5p 0 0 1
chr12:57193625|57193941 hsa-miR-1251-3p 0 0 1
chr12:57193625|57193941 hsa-miR-1321 0 0 1
chr12:57193625|57193941 hsa-miR-1825 0 1 1
chr12:57193625|57193941 hsa-miR-491-5p 0 0 1
chr12:57193625|57193941 hsa-miR-486-3p 0 1 1
chr12:57193625|57193941 hsa-miR-885-3p 0 0 1
chr12:57193625|57193941 hsa-miR-767-5p 0 0 1
chr12:57193625|57193941 hsa-miR-146b-3p 0 0 1
chr12:57193625|57193941 hsa-miR-140-3p 0 0 1
chr12:57193625|57193941 hsa-miR-515-3p 0 0 1
chr12:57193625|57193941 hsa-let-7a 0 0 1
chr12:57193625|57193941 hsa-let-7f 0 0 1
chr12:57193625|57193941 hsa-miR-484 1 0 0
chr12:57193625|57193941 hsa-miR-602 1 0 0
chr12:57193625|57193941 hsa-miR-762 1 0 0
chr12:57193625|57193941 hsa-miR-4437 0 1 0
chr12:57193625|57193941 hsa-miR-4453 0 1 0
chr12:57193625|57193941 hsa-miR-4489 1 1 0
chr12:57193625|57193941 hsa-miR-4538 0 1 0
chr12:57193625|57193941 hsa-miR-4651 0 1 0
chr12:57193625|57193941 hsa-miR-4688 1 0 0
chr12:57193625|57193941 hsa-miR-4739 0 1 0
chr12:57193625|57193941 hsa-miR-4741 1 0 0
chr12:57193625|57193941 hsa-miR-5194 0 1 0
chr12:57193625|57193941 hsa-miR-8073 1 0 0
chr12:57193625|57193941 hsa-miR-12122 0 1 0
chr12:57193625|57193941 hsa-miR-12128 0 1 0
chr12:57193625|57193941 hsa-miR-4700-3p 0 1 0
chr12:57193625|57193941 hsa-miR-4665-3p 1 0 0
chr12:57193625|57193941 hsa-miR-6510-5p 1 0 0
chr12:57193625|57193941 hsa-miR-6089 1 0 0
chr12:57193625|57193941 hsa-miR-4722-5p 1 0 0
chr12:57193625|57193941 hsa-miR-6721-5p 0 1 0
chr12:57193625|57193941 hsa-miR-3151-5p 0 1 0
chr12:57193625|57193941 hsa-miR-6796-5p 0 1 0
chr12:57193625|57193941 hsa-miR-6782-5p 1 1 0
chr12:57193625|57193941 hsa-miR-3194-5p 1 0 0
chr12:57193625|57193941 hsa-miR-6786-5p 1 1 0
chr12:57193625|57193941 hsa-miR-5088-5p 1 0 0
chr12:57193625|57193941 hsa-miR-7108-3p 0 1 0
chr12:57193625|57193941 hsa-miR-4707-3p 0 1 0
chr12:57193625|57193941 hsa-miR-3944-3p 1 0 0
chr12:57193625|57193941 hsa-miR-4640-5p 1 1 0
chr12:57193625|57193941 hsa-miR-3677-3p 1 0 0
chr12:57193625|57193941 hsa-miR-149-3p 0 1 0
chr12:57193625|57193941 hsa-miR-4684-3p 0 1 0
chr12:57193625|57193941 hsa-miR-6804-3p 0 1 0
chr12:57193625|57193941 hsa-miR-6801-5p 0 1 0
chr12:57193625|57193941 hsa-miR-7113-5p 0 1 0
chr12:57193625|57193941 hsa-miR-371b-3p 0 1 0
chr12:57193625|57193941 hsa-miR-4797-5p 0 1 0
chr12:57193625|57193941 hsa-miR-1228-3p 1 0 0
chr12:57193625|57193941 hsa-miR-4763-3p 1 0 0
chr12:57193625|57193941 hsa-miR-6816-5p 1 0 0
chr12:57193625|57193941 hsa-miR-6775-5p 1 0 0
chr12:57193625|57193941 hsa-miR-6743-5p 1 0 0
chr12:57193625|57193941 hsa-miR-6754-5p 0 1 0
chr12:57193625|57193941 hsa-miR-6756-5p 1 1 0
chr12:57193625|57193941 hsa-miR-6722-3p 1 0 0
chr12:57193625|57193941 hsa-miR-6875-5p 0 1 0
chr12:57193625|57193941 hsa-miR-6879-5p 1 0 0
chr12:57193625|57193941 hsa-miR-1915-3p 0 1 0
chr12:57193625|57193941 hsa-miR-4728-5p 0 1 0
chr12:57193625|57193941 hsa-miR-10396a-5p 1 0 0
chr12:57193625|57193941 hsa-miR-10396b-5p 1 0 0
chr12:57193625|57193941 hsa-miR-1237-5p 1 0 0
chr12:57193625|57193941 hsa-miR-328-5p 1 1 0
chr12:57193625|57193941 hsa-miR-4685-5p 1 0 0
chr12:57193625|57193941 hsa-miR-4726-5p 0 1 0
chr12:57193625|57193941 hsa-miR-6738-5p 0 1 0
chr12:57193625|57193941 hsa-miR-6846-5p 0 1 0
chr12:57193625|57193941 hsa-miR-6883-5p 0 1 0
chr12:57193625|57193941 hsa-miR-6845-5p 0 1 0
chr12:57193625|57193941 hsa-miR-7151-3p 1 0 0
chr12:57193625|57193941 hsa-miR-6766-5p 0 1 0
chr12:57193625|57193941 hsa-miR-6785-5p 0 1 0
chr12:57193625|57193941 hsa-miR-6762-5p 0 1 0
chr12:57193625|57193941 hsa-miR-10392-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:57193625|57193941
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MSLGPVVSGSRHSVTGQGRCCGPGALSCVLLAPTEKTLA
Nucleotide Sequence TTGTCCCTGGGCCCCGTGGTGTCTGGTTCAAGGCACTCTGTGACAGGCCAGGGCAGGTGCTGTGGGCCAGGAGCTCTGTCCTGCGTCCTTCTGGCCCCCACAGAGAAAACTCTGGCCTGA
CircID chr12:57193625|57193941
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MALTRSLATVSEAHWHNPSVPQFLPHPSLAKLCPWAPWCLVQGTL
Nucleotide Sequence ATGGCTCTGACGAGATCCCTTGCAACAGTGAGTGAGGCGCACTGGCATAACCCATCTGTACCTCAGTTCCTGCCCCACCCCTCCCTGGCCAAGCTTTGTCCCTGGGCCCCGTGGTGTCTGGTTCAAGGCACTCTGTGA
CircID chr12:57193625|57193941
ORF Type ORF3
Protein Length 76
Nucleotide Length 228
Protein Sequence MYLSSCPTPPWPSFVPGPRGVWFKALCDRPGQVLWARSSVLRPSGPHRENSGLTIRGGHCSRDSLWCGRVPLPGRD
Nucleotide Sequence CTGTACCTCAGTTCCTGCCCCACCCCTCCCTGGCCAAGCTTTGTCCCTGGGCCCCGTGGTGTCTGGTTCAAGGCACTCTGTGACAGGCCAGGGCAGGTGCTGTGGGCCAGGAGCTCTGTCCTGCGTCCTTCTGGCCCCCACAGAGAAAACTCTGGCCTGACGATACGGGGCGGGCACTGTTCTAGAGACAGCCTGTGGTGTGGGCGAGTTCCGCTGCCGGGACGGGAC
CircID chr12:57193625|57193941
ORF Type ORF4
Protein Length 61
Nucleotide Length 183
Protein Sequence MPWPVTECLEPDTTGPRDKAWPGRGGAGTEVQMGYASAPHSLLQGISSEPSPQSSAPLHHS
Nucleotide Sequence CTGCCCTGGCCTGTCACAGAGTGCCTTGAACCAGACACCACGGGGCCCAGGGACAAAGCTTGGCCAGGGAGGGGTGGGGCAGGAACTGAGGTACAGATGGGTTATGCCAGTGCGCCTCACTCACTGTTGCAAGGGATCTCGTCAGAGCCATCCCCACAGTCGTCGGCCCCGTTGCACCACAGC
CircID chr12:57193625|57193941
ORF Type ORF5
Protein Length 93
Nucleotide Length 279
Protein Sequence MSLEQCPPRIVRPEFSLWGPEGRRTELLAHSTCPGLSQSALNQTPRGPGTKLGQGGVGQELRYRWVMPVRLTHCCKGSRQSHPHSRRPRCTTA
Nucleotide Sequence CTGTCTCTAGAACAGTGCCCGCCCCGTATCGTCAGGCCAGAGTTTTCTCTGTGGGGGCCAGAAGGACGCAGGACAGAGCTCCTGGCCCACAGCACCTGCCCTGGCCTGTCACAGAGTGCCTTGAACCAGACACCACGGGGCCCAGGGACAAAGCTTGGCCAGGGAGGGGTGGGGCAGGAACTGAGGTACAGATGGGTTATGCCAGTGCGCCTCACTCACTGTTGCAAGGGATCTCGTCAGAGCCATCCCCACAGTCGTCGGCCCCGTTGCACCACAGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab