CircRNA Information

General Information
circRNA Basic Information
CircID chr12:57235312|57235580
Strand -
CircType exon
Host Gene ENSG00000185633.9;
Algorism CIRI2;
Sequence CCCTGCTGGTGCTGCCTGCCTCCTCCTCCCCCACGTGGGACTCAAGCCAAGGGTCAGAGGCGCTTCCGCTGCTGGGAGCAAGGGAGGAGAGTAGGGGTGGAGCAGCCTCCCCTCTGCGTGGGAACCCGGCCTGTGTAAGCAGTAGCGGGACAGGGTGGCCGGAGTGATGCCTTGGGGCCTGCGGGGAGGAGTGGAAGAAGTGGATGGGCTGGCTGGCTGTGGCTTGCATGGCACTGGCAGCCCAGCCTGGCTTAGAAGTCTGGCCGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:57235312|57235580 hsa-miR-29a-5p 0 0 1
chr12:57235312|57235580 hsa-miR-29a-3p 0 0 1
chr12:57235312|57235580 hsa-miR-10a-5p 0 0 1
chr12:57235312|57235580 hsa-miR-10a-3p 0 0 1
chr12:57235312|57235580 hsa-miR-10b-5p 0 0 1
chr12:57235312|57235580 hsa-miR-10b-3p 0 0 1
chr12:57235312|57235580 hsa-miR-214-5p 0 0 1
chr12:57235312|57235580 hsa-miR-214-3p 0 0 1
chr12:57235312|57235580 hsa-miR-29c-5p 0 0 1
chr12:57235312|57235580 hsa-miR-29c-3p 0 0 1
chr12:57235312|57235580 hsa-miR-503-5p 0 0 1
chr12:57235312|57235580 hsa-miR-503-3p 0 0 1
chr12:57235312|57235580 hsa-miR-504-5p 0 0 1
chr12:57235312|57235580 hsa-miR-504-3p 0 0 1
chr12:57235312|57235580 hsa-miR-623 0 0 1
chr12:57235312|57235580 hsa-miR-625-5p 0 0 1
chr12:57235312|57235580 hsa-miR-625-3p 0 0 1
chr12:57235312|57235580 hsa-miR-627-5p 0 0 1
chr12:57235312|57235580 hsa-miR-627-3p 0 0 1
chr12:57235312|57235580 hsa-miR-634 0 0 1
chr12:57235312|57235580 hsa-miR-650 0 1 1
chr12:57235312|57235580 hsa-miR-662 0 1 1
chr12:57235312|57235580 hsa-miR-765 0 1 1
chr12:57235312|57235580 hsa-miR-940 0 1 1
chr12:57235312|57235580 hsa-miR-1226-5p 0 0 1
chr12:57235312|57235580 hsa-miR-1226-3p 0 0 1
chr12:57235312|57235580 hsa-miR-1275 0 1 1
chr12:57235312|57235580 hsa-miR-1825 0 0 1
chr12:57235312|57235580 hsa-miR-1827 0 0 1
chr12:57235312|57235580 hsa-miR-485-5p 0 0 1
chr12:57235312|57235580 hsa-miR-339-5p 1 1 1
chr12:57235312|57235580 hsa-miR-188-3p 0 0 1
chr12:57235312|57235580 hsa-miR-483-3p 0 1 1
chr12:57235312|57235580 hsa-miR-1260 0 0 1
chr12:57235312|57235580 hsa-miR-29b 0 0 1
chr12:57235312|57235580 hsa-miR-596 1 0 0
chr12:57235312|57235580 hsa-miR-762 0 1 0
chr12:57235312|57235580 hsa-miR-4268 0 1 0
chr12:57235312|57235580 hsa-miR-4279 0 1 0
chr12:57235312|57235580 hsa-miR-3943 1 0 0
chr12:57235312|57235580 hsa-miR-4449 1 0 0
chr12:57235312|57235580 hsa-miR-4505 0 1 0
chr12:57235312|57235580 hsa-miR-4514 0 1 0
chr12:57235312|57235580 hsa-miR-4530 0 1 0
chr12:57235312|57235580 hsa-miR-3972 1 0 0
chr12:57235312|57235580 hsa-miR-4692 0 1 0
chr12:57235312|57235580 hsa-miR-4739 1 1 0
chr12:57235312|57235580 hsa-miR-4767 1 0 0
chr12:57235312|57235580 hsa-miR-7706 1 1 0
chr12:57235312|57235580 hsa-miR-6749-3p 1 1 0
chr12:57235312|57235580 hsa-miR-6765-5p 1 0 0
chr12:57235312|57235580 hsa-miR-6836-3p 1 0 0
chr12:57235312|57235580 hsa-miR-212-5p 0 1 0
chr12:57235312|57235580 hsa-miR-7106-5p 0 1 0
chr12:57235312|57235580 hsa-miR-6825-5p 0 1 0
chr12:57235312|57235580 hsa-miR-6720-5p 1 0 0
chr12:57235312|57235580 hsa-miR-6892-3p 1 0 0
chr12:57235312|57235580 hsa-miR-6089 1 0 0
chr12:57235312|57235580 hsa-miR-4695-5p 1 1 0
chr12:57235312|57235580 hsa-miR-874-5p 0 1 0
chr12:57235312|57235580 hsa-miR-6762-3p 1 1 0
chr12:57235312|57235580 hsa-miR-23b-5p 0 1 0
chr12:57235312|57235580 hsa-miR-6849-3p 1 0 0
chr12:57235312|57235580 hsa-miR-7110-3p 1 0 0
chr12:57235312|57235580 hsa-miR-6845-3p 1 1 0
chr12:57235312|57235580 hsa-miR-877-3p 1 1 0
chr12:57235312|57235580 hsa-miR-23a-5p 0 1 0
chr12:57235312|57235580 hsa-miR-2467-3p 0 1 0
chr12:57235312|57235580 hsa-miR-6858-3p 1 1 0
chr12:57235312|57235580 hsa-miR-4436b-5p 1 1 0
chr12:57235312|57235580 hsa-miR-4793-5p 1 0 0
chr12:57235312|57235580 hsa-miR-4763-5p 1 0 0
chr12:57235312|57235580 hsa-miR-1247-5p 1 0 0
chr12:57235312|57235580 hsa-miR-1908-3p 1 0 0
chr12:57235312|57235580 hsa-miR-4640-5p 1 0 0
chr12:57235312|57235580 hsa-miR-4446-3p 0 1 0
chr12:57235312|57235580 hsa-miR-6824-5p 0 1 0
chr12:57235312|57235580 hsa-miR-3065-3p 0 1 0
chr12:57235312|57235580 hsa-miR-6870-3p 1 0 0
chr12:57235312|57235580 hsa-miR-1236-3p 0 1 0
chr12:57235312|57235580 hsa-miR-7106-3p 1 0 0
chr12:57235312|57235580 hsa-miR-6828-3p 0 1 0
chr12:57235312|57235580 hsa-miR-6887-3p 1 0 0
chr12:57235312|57235580 hsa-miR-7112-3p 0 1 0
chr12:57235312|57235580 hsa-miR-4632-3p 1 1 0
chr12:57235312|57235580 hsa-miR-6748-3p 0 1 0
chr12:57235312|57235580 hsa-miR-449b-3p 0 1 0
chr12:57235312|57235580 hsa-miR-3620-3p 0 1 0
chr12:57235312|57235580 hsa-miR-4717-5p 0 1 0
chr12:57235312|57235580 hsa-miR-6846-3p 0 1 0
chr12:57235312|57235580 hsa-miR-3186-3p 0 1 0
chr12:57235312|57235580 hsa-miR-4714-5p 0 1 0
chr12:57235312|57235580 hsa-miR-6778-5p 1 0 0
chr12:57235312|57235580 hsa-miR-6870-5p 0 1 0
chr12:57235312|57235580 hsa-miR-1343-5p 1 0 0
chr12:57235312|57235580 hsa-miR-11181-3p 0 1 0
chr12:57235312|57235580 hsa-miR-7111-5p 1 1 0
chr12:57235312|57235580 hsa-miR-4685-3p 0 1 0
chr12:57235312|57235580 hsa-miR-4728-5p 1 1 0
chr12:57235312|57235580 hsa-miR-6780b-5p 1 0 0
chr12:57235312|57235580 hsa-miR-6858-5p 0 1 0
chr12:57235312|57235580 hsa-miR-4723-5p 0 1 0
chr12:57235312|57235580 hsa-miR-4665-5p 0 1 0
chr12:57235312|57235580 hsa-miR-6877-3p 1 1 0
chr12:57235312|57235580 hsa-miR-3173-3p 0 1 0
chr12:57235312|57235580 hsa-miR-4722-3p 1 0 0
chr12:57235312|57235580 hsa-miR-193b-3p 1 0 0
chr12:57235312|57235580 hsa-miR-6805-3p 1 0 0
chr12:57235312|57235580 hsa-miR-6810-3p 1 1 0
chr12:57235312|57235580 hsa-miR-10394-5p 1 0 0
chr12:57235312|57235580 hsa-miR-10397-5p 1 0 0
chr12:57235312|57235580 hsa-miR-4690-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:57235312|57235580
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MPPPPPRGTQAKGQRRFRCWEQGRRVGVEQPPLCVGTRPV
Nucleotide Sequence CTGCCTCCTCCTCCCCCACGTGGGACTCAAGCCAAGGGTCAGAGGCGCTTCCGCTGCTGGGAGCAAGGGAGGAGAGTAGGGGTGGAGCAGCCTCCCCTCTGCGTGGGAACCCGGCCTGTGTAA
CircID chr12:57235312|57235580
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MGPAGRSGRSGWAGWLWLAWHWQPSLA
Nucleotide Sequence TTGGGGCCTGCGGGGAGGAGTGGAAGAAGTGGATGGGCTGGCTGGCTGTGGCTTGCATGGCACTGGCAGCCCAGCCTGGCTTAG
CircID chr12:57235312|57235580
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MPWGLRGGVEEVDGLAGCGLHGTGSPAWLRSLAG
Nucleotide Sequence ATGCCTTGGGGCCTGCGGGGAGGAGTGGAAGAAGTGGATGGGCTGGCTGGCTGTGGCTTGCATGGCACTGGCAGCCCAGCCTGGCTTAGAAGTCTGGCCGGT
CircID chr12:57235312|57235580
ORF Type ORF4
Protein Length 54
Nucleotide Length 165
Protein Sequence LLVLPASSSPTWDSSQGSEALPLLGAREESRGGAASPLRGNPACVSSSGTGWPE
Nucleotide Sequence CTGCTGGTGCTGCCTGCCTCCTCCTCCCCCACGTGGGACTCAAGCCAAGGGTCAGAGGCGCTTCCGCTGCTGGGAGCAAGGGAGGAGAGTAGGGGTGGAGCAGCCTCCCCTCTGCGTGGGAACCCGGCCTGTGTAAGCAGTAGCGGGACAGGGTGGCCGGAGTGA
CircID chr12:57235312|57235580
ORF Type ORF5
Protein Length 63
Nucleotide Length 192
Protein Sequence MGCQCHASHSQPAHPLLPLLPAGPKASLRPPCPATAYTGRVPTQRGGCSTPTLLPCSQQRKRL
Nucleotide Sequence CTGGGCTGCCAGTGCCATGCAAGCCACAGCCAGCCAGCCCATCCACTTCTTCCACTCCTCCCCGCAGGCCCCAAGGCATCACTCCGGCCACCCTGTCCCGCTACTGCTTACACAGGCCGGGTTCCCACGCAGAGGGGAGGCTGCTCCACCCCTACTCTCCTCCCTTGCTCCCAGCAGCGGAAGCGCCTCTGA
CircID chr12:57235312|57235580
ORF Type ORF6
Protein Length 76
Nucleotide Length 228
Protein Sequence MQATASQPIHFFHSSPQAPRHHSGHPVPLLLTQAGFPRRGEAAPPLLSSLAPSSGSASDPWLESHVGEEEAGSTSR
Nucleotide Sequence ATGCAAGCCACAGCCAGCCAGCCCATCCACTTCTTCCACTCCTCCCCGCAGGCCCCAAGGCATCACTCCGGCCACCCTGTCCCGCTACTGCTTACACAGGCCGGGTTCCCACGCAGAGGGGAGGCTGCTCCACCCCTACTCTCCTCCCTTGCTCCCAGCAGCGGAAGCGCCTCTGACCCTTGGCTTGAGTCCCACGTGGGGGAGGAGGAGGCAGGCAGCACCAGCAGG
CircID chr12:57235312|57235580
ORF Type ORF7
Protein Length 80
Nucleotide Length 240
Protein Sequence MPVPCKPQPASPSTSSTPPRRPQGITPATLSRYCLHRPGSHAEGRLLHPYSPPLLPAAEAPLTLGLSPTWGRRRQAAPAG
Nucleotide Sequence CTGCCAGTGCCATGCAAGCCACAGCCAGCCAGCCCATCCACTTCTTCCACTCCTCCCCGCAGGCCCCAAGGCATCACTCCGGCCACCCTGTCCCGCTACTGCTTACACAGGCCGGGTTCCCACGCAGAGGGGAGGCTGCTCCACCCCTACTCTCCTCCCTTGCTCCCAGCAGCGGAAGCGCCTCTGACCCTTGGCTTGAGTCCCACGTGGGGGAGGAGGAGGCAGGCAGCACCAGCAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab