CircRNA Information

General Information
circRNA Basic Information
CircID chr12:57524029|57524325
Strand +
CircType exon
Host Gene ENSG00000166987.13;
Algorism CIRI2;
Sequence TGCTCTCATTGCCCCCATTCATTGTGTGTAATCAGCTCCCGCGTGCCTGATAACACAGACATCCATGTAGGCACTAGGAGGATTAAACTGAGCGAAGTACCTGAGAGAGGACTCCAGGAAGGCAAAGGTTGTGGGGAGACCCAAGAAAACTCAGGGGAAGCCCCAGAGGAGCAAGGGGAACCCCTCAGCTGGGAGGGAGACTGAGGAGTCCTCTGCCGTATCACCACAGCTACCTGAACATCTCTGCAAACATTGTGGGGTCCAGTCTAAAGCCGGGGCCACCAGCTTAGCCCACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:57524029|57524325 hsa-miR-326 0 1 1
chr12:57524029|57524325 hsa-miR-519e-5p 0 0 1
chr12:57524029|57524325 hsa-miR-519e-3p 0 0 1
chr12:57524029|57524325 hsa-miR-578 0 0 1
chr12:57524029|57524325 hsa-miR-603 0 0 1
chr12:57524029|57524325 hsa-miR-622 0 0 1
chr12:57524029|57524325 hsa-miR-635 0 0 1
chr12:57524029|57524325 hsa-miR-637 1 0 1
chr12:57524029|57524325 hsa-miR-920 0 0 1
chr12:57524029|57524325 hsa-miR-663b 0 1 1
chr12:57524029|57524325 hsa-miR-1266-5p 0 0 1
chr12:57524029|57524325 hsa-miR-1266-3p 0 0 1
chr12:57524029|57524325 hsa-miR-361-5p 0 0 1
chr12:57524029|57524325 hsa-miR-193a-5p 0 0 1
chr12:57524029|57524325 hsa-miR-1289 0 0 1
chr12:57524029|57524325 hsa-miR-423-5p 0 0 1
chr12:57524029|57524325 hsa-miR-490-5p 0 0 1
chr12:57524029|57524325 hsa-miR-331-3p 0 0 1
chr12:57524029|57524325 hsa-miR-654-3p 0 0 1
chr12:57524029|57524325 hsa-miR-125a-5p 0 0 1
chr12:57524029|57524325 hsa-miR-330-5p 0 1 1
chr12:57524029|57524325 hsa-miR-515-3p 0 0 1
chr12:57524029|57524325 hsa-miR-362-3p 0 0 1
chr12:57524029|57524325 hsa-miR-125b 0 0 1
chr12:57524029|57524325 hsa-miR-138 0 0 1
chr12:57524029|57524325 hsa-miR-500 0 0 1
chr12:57524029|57524325 hsa-miR-329 0 0 1
chr12:57524029|57524325 hsa-miR-768-3p 0 0 1
chr12:57524029|57524325 hsa-miR-371-3p 0 0 1
chr12:57524029|57524325 hsa-miR-151-3p 0 0 1
chr12:57524029|57524325 hsa-miR-346 1 0 0
chr12:57524029|57524325 hsa-miR-623 1 0 0
chr12:57524029|57524325 hsa-miR-764 1 0 0
chr12:57524029|57524325 hsa-miR-1538 1 0 0
chr12:57524029|57524325 hsa-miR-3183 1 1 0
chr12:57524029|57524325 hsa-miR-4296 0 1 0
chr12:57524029|57524325 hsa-miR-4297 0 1 0
chr12:57524029|57524325 hsa-miR-4300 0 1 0
chr12:57524029|57524325 hsa-miR-4322 1 1 0
chr12:57524029|57524325 hsa-miR-4254 0 1 0
chr12:57524029|57524325 hsa-miR-4326 0 1 0
chr12:57524029|57524325 hsa-miR-4265 0 1 0
chr12:57524029|57524325 hsa-miR-3909 0 1 0
chr12:57524029|57524325 hsa-miR-3941 0 1 0
chr12:57524029|57524325 hsa-miR-4456 0 1 0
chr12:57524029|57524325 hsa-miR-4515 1 0 0
chr12:57524029|57524325 hsa-miR-1587 1 1 0
chr12:57524029|57524325 hsa-miR-4656 1 0 0
chr12:57524029|57524325 hsa-miR-5787 1 0 0
chr12:57524029|57524325 hsa-miR-6069 1 0 0
chr12:57524029|57524325 hsa-miR-7702 0 1 0
chr12:57524029|57524325 hsa-miR-7974 1 0 0
chr12:57524029|57524325 hsa-miR-4433b-3p 1 0 0
chr12:57524029|57524325 hsa-miR-4687-3p 1 0 0
chr12:57524029|57524325 hsa-miR-6881-3p 0 1 0
chr12:57524029|57524325 hsa-miR-3622a-5p 0 1 0
chr12:57524029|57524325 hsa-miR-23b-5p 0 1 0
chr12:57524029|57524325 hsa-miR-7110-3p 0 1 0
chr12:57524029|57524325 hsa-miR-6716-5p 1 0 0
chr12:57524029|57524325 hsa-miR-2467-3p 1 0 0
chr12:57524029|57524325 hsa-miR-1343-3p 1 1 0
chr12:57524029|57524325 hsa-miR-4717-3p 0 1 0
chr12:57524029|57524325 hsa-miR-6847-5p 0 1 0
chr12:57524029|57524325 hsa-miR-6780a-3p 0 1 0
chr12:57524029|57524325 hsa-miR-660-3p 1 1 0
chr12:57524029|57524325 hsa-miR-6782-3p 0 1 0
chr12:57524029|57524325 hsa-miR-6895-3p 0 1 0
chr12:57524029|57524325 hsa-miR-6792-5p 1 0 0
chr12:57524029|57524325 hsa-miR-6734-3p 1 0 0
chr12:57524029|57524325 hsa-miR-3675-5p 1 1 0
chr12:57524029|57524325 hsa-miR-6509-5p 1 0 0
chr12:57524029|57524325 hsa-miR-6759-3p 1 1 0
chr12:57524029|57524325 hsa-miR-3186-3p 0 1 0
chr12:57524029|57524325 hsa-miR-4802-3p 0 1 0
chr12:57524029|57524325 hsa-miR-1207-5p 1 0 0
chr12:57524029|57524325 hsa-miR-4763-3p 1 0 0
chr12:57524029|57524325 hsa-miR-6812-5p 1 0 0
chr12:57524029|57524325 hsa-miR-6865-5p 1 0 0
chr12:57524029|57524325 hsa-miR-6815-5p 1 0 0
chr12:57524029|57524325 hsa-miR-10401-5p 0 1 0
chr12:57524029|57524325 hsa-miR-3620-5p 1 1 0
chr12:57524029|57524325 hsa-miR-6846-5p 1 0 0
chr12:57524029|57524325 hsa-miR-939-5p 1 0 0
chr12:57524029|57524325 hsa-miR-10396b-3p 0 1 0
chr12:57524029|57524325 hsa-miR-3198 0 1 0
chr12:57524029|57524325 hsa-miR-1914-3p 1 0 0
chr12:57524029|57524325 hsa-miR-10392-3p 1 0 0
chr12:57524029|57524325 hsa-miR-4723-3p 0 1 0
chr12:57524029|57524325 hsa-miR-5581-5p 0 1 0
chr12:57524029|57524325 hsa-miR-6783-3p 0 1 0
chr12:57524029|57524325 hsa-miR-6715b-5p 0 1 0
chr12:57524029|57524325 hsa-miR-3121-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:57524029|57524325
ORF Type ORF1
Protein Length 60
Nucleotide Length 183
Protein Sequence MCVISSRVPDNTDIHVGTRRIKLSEVPERGLQEGKGCGETQENSGEAPEEQGEPLSWEGD
Nucleotide Sequence TTGTGTGTAATCAGCTCCCGCGTGCCTGATAACACAGACATCCATGTAGGCACTAGGAGGATTAAACTGAGCGAAGTACCTGAGAGAGGACTCCAGGAAGGCAAAGGTTGTGGGGAGACCCAAGAAAACTCAGGGGAAGCCCCAGAGGAGCAAGGGGAACCCCTCAGCTGGGAGGGAGACTGA
CircID chr12:57524029|57524325
ORF Type ORF2
Protein Length 65
Nucleotide Length 195
Protein Sequence MREDSRKAKVVGRPKKTQGKPQRSKGNPSAGRETEESSAVSPQLPEHLCKHCGVQSKAGATSLAH
Nucleotide Sequence CTGAGAGAGGACTCCAGGAAGGCAAAGGTTGTGGGGAGACCCAAGAAAACTCAGGGGAAGCCCCAGAGGAGCAAGGGGAACCCCTCAGCTGGGAGGGAGACTGAGGAGTCCTCTGCCGTATCACCACAGCTACCTGAACATCTCTGCAAACATTGTGGGGTCCAGTCTAAAGCCGGGGCCACCAGCTTAGCCCAC
CircID chr12:57524029|57524325
ORF Type ORF3
Protein Length 53
Nucleotide Length 162
Protein Sequence MWGDPRKLRGSPRGARGTPQLGGRLRSPLPYHHSYLNISANIVGSSLKPGPPA
Nucleotide Sequence TTGTGGGGAGACCCAAGAAAACTCAGGGGAAGCCCCAGAGGAGCAAGGGGAACCCCTCAGCTGGGAGGGAGACTGAGGAGTCCTCTGCCGTATCACCACAGCTACCTGAACATCTCTGCAAACATTGTGGGGTCCAGTCTAAAGCCGGGGCCACCAGCTTAG
CircID chr12:57524029|57524325
ORF Type ORF4
Protein Length 44
Nucleotide Length 135
Protein Sequence MVAPALDWTPQCLQRCSGSCGDTAEDSSVSLPAEGFPLLLWGFP
Nucleotide Sequence CTGGTGGCCCCGGCTTTAGACTGGACCCCACAATGTTTGCAGAGATGTTCAGGTAGCTGTGGTGATACGGCAGAGGACTCCTCAGTCTCCCTCCCAGCTGAGGGGTTCCCCTTGCTCCTCTGGGGCTTCCCCTGA
CircID chr12:57524029|57524325
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence MGLPTTFAFLESSLRYFAQFNPPSAYMDVCVIRHAGADYTQ
Nucleotide Sequence TTGGGTCTCCCCACAACCTTTGCCTTCCTGGAGTCCTCTCTCAGGTACTTCGCTCAGTTTAATCCTCCTAGTGCCTACATGGATGTCTGTGTTATCAGGCACGCGGGAGCTGATTACACACAATGA
CircID chr12:57524029|57524325
ORF Type ORF6
Protein Length 60
Nucleotide Length 183
Protein Sequence MRGSPCSSGASPEFSWVSPQPLPSWSPLSGTSLSLILLVPTWMSVLSGTRELITHNEWGQ
Nucleotide Sequence CTGAGGGGTTCCCCTTGCTCCTCTGGGGCTTCCCCTGAGTTTTCTTGGGTCTCCCCACAACCTTTGCCTTCCTGGAGTCCTCTCTCAGGTACTTCGCTCAGTTTAATCCTCCTAGTGCCTACATGGATGTCTGTGTTATCAGGCACGCGGGAGCTGATTACACACAATGAATGGGGGCAATGA
CircID chr12:57524029|57524325
ORF Type ORF7
Protein Length 27
Nucleotide Length 84
Protein Sequence MGLPLSFLGSPHNLCLPGVLSQVLRSV
Nucleotide Sequence CTGGGGCTTCCCCTGAGTTTTCTTGGGTCTCCCCACAACCTTTGCCTTCCTGGAGTCCTCTCTCAGGTACTTCGCTCAGTTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab