CircRNA Information

General Information
circRNA Basic Information
CircID chr12:57527161|57527544
Strand -
CircType exon
Host Gene ENSG00000166987.13;
Algorism CIRI2;
Sequence CCTCATAGCTTTAAATTCTGCGCTGCTGGCTGCCACCCTGGATCCCCCCTCGGGGACACCCCCCCAGGTGAGGATGGGGGTGAGTAGGTGGGACAGAACAAGATGTAGAATAAGAGATGGGAGCTGGGAATCAAAAGCTTTCAGTTTCATTCCTGAGCTCTTCCTTGGGGCCTTTGGGGAGGCCTTAGTTCTTGGCTGGGGGTAGGATGACTGCAAGAATTGGGTCTGTATTTAATAAGCATGGCCTATCTCACTTGAGGCTTCAGTCAGATAGTGGATGTGAAAGCACTATAAATCTGTTGAGTATTTTACACGCGTAAGTGTTAGAATCATTCTTTTTTCTTAGCCCTGTGTCCTGAGTGCCCCCCAACCTGGACCACCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:57527161|57527544 hsa-miR-23a-5p 0 0 1
chr12:57527161|57527544 hsa-miR-23a-3p 0 0 1
chr12:57527161|57527544 hsa-miR-23b-5p 0 0 1
chr12:57527161|57527544 hsa-miR-23b-3p 0 0 1
chr12:57527161|57527544 hsa-miR-141-5p 0 0 1
chr12:57527161|57527544 hsa-miR-141-3p 0 0 1
chr12:57527161|57527544 hsa-miR-186-5p 0 0 1
chr12:57527161|57527544 hsa-miR-186-3p 0 0 1
chr12:57527161|57527544 hsa-miR-320a-5p 0 0 1
chr12:57527161|57527544 hsa-miR-320a-3p 0 0 1
chr12:57527161|57527544 hsa-miR-200a-5p 0 0 1
chr12:57527161|57527544 hsa-miR-200a-3p 0 0 1
chr12:57527161|57527544 hsa-miR-345-5p 0 0 1
chr12:57527161|57527544 hsa-miR-345-3p 0 0 1
chr12:57527161|57527544 hsa-miR-520f-5p 0 0 1
chr12:57527161|57527544 hsa-miR-520f-3p 0 0 1
chr12:57527161|57527544 hsa-miR-503-5p 0 0 1
chr12:57527161|57527544 hsa-miR-503-3p 0 0 1
chr12:57527161|57527544 hsa-miR-510-5p 0 0 1
chr12:57527161|57527544 hsa-miR-510-3p 0 0 1
chr12:57527161|57527544 hsa-miR-637 0 0 1
chr12:57527161|57527544 hsa-miR-421 0 0 1
chr12:57527161|57527544 hsa-miR-888-5p 0 0 1
chr12:57527161|57527544 hsa-miR-888-3p 0 0 1
chr12:57527161|57527544 hsa-miR-873-5p 0 0 1
chr12:57527161|57527544 hsa-miR-873-3p 0 0 1
chr12:57527161|57527544 hsa-miR-1275 0 0 1
chr12:57527161|57527544 hsa-miR-1197 0 1 1
chr12:57527161|57527544 hsa-miR-512-3p 0 0 1
chr12:57527161|57527544 hsa-miR-885-3p 0 0 1
chr12:57527161|57527544 hsa-miR-361-3p 0 1 1
chr12:57527161|57527544 hsa-miR-1224-3p 0 1 1
chr12:57527161|57527544 hsa-miR-320b 0 0 1
chr12:57527161|57527544 hsa-miR-320c 0 0 1
chr12:57527161|57527544 hsa-miR-320d 0 0 1
chr12:57527161|57527544 hsa-miR-1260 0 0 1
chr12:57527161|57527544 hsa-miR-1280 0 0 1
chr12:57527161|57527544 hsa-miR-323-5p 0 0 1
chr12:57527161|57527544 hsa-miR-220c 0 0 1
chr12:57527161|57527544 hsa-miR-608 1 0 0
chr12:57527161|57527544 hsa-miR-638 1 0 0
chr12:57527161|57527544 hsa-miR-1260a 0 1 0
chr12:57527161|57527544 hsa-miR-1260b 0 1 0
chr12:57527161|57527544 hsa-miR-4281 1 0 0
chr12:57527161|57527544 hsa-miR-4439 0 1 0
chr12:57527161|57527544 hsa-miR-4488 1 0 0
chr12:57527161|57527544 hsa-miR-4511 0 1 0
chr12:57527161|57527544 hsa-miR-4518 0 1 0
chr12:57527161|57527544 hsa-miR-4530 0 1 0
chr12:57527161|57527544 hsa-miR-6077 0 1 0
chr12:57527161|57527544 hsa-miR-12128 0 1 0
chr12:57527161|57527544 hsa-miR-150-3p 1 0 0
chr12:57527161|57527544 hsa-miR-323a-5p 0 1 0
chr12:57527161|57527544 hsa-miR-3157-5p 0 1 0
chr12:57527161|57527544 hsa-miR-6836-3p 1 0 0
chr12:57527161|57527544 hsa-miR-6854-5p 0 1 0
chr12:57527161|57527544 hsa-miR-3151-5p 1 0 0
chr12:57527161|57527544 hsa-miR-486-3p 1 0 0
chr12:57527161|57527544 hsa-miR-3934-3p 1 1 0
chr12:57527161|57527544 hsa-miR-5088-5p 1 1 0
chr12:57527161|57527544 hsa-miR-7109-5p 1 1 0
chr12:57527161|57527544 hsa-miR-4738-3p 0 1 0
chr12:57527161|57527544 hsa-miR-4793-5p 0 1 0
chr12:57527161|57527544 hsa-miR-4713-3p 0 1 0
chr12:57527161|57527544 hsa-miR-4743-3p 0 1 0
chr12:57527161|57527544 hsa-miR-5196-3p 0 1 0
chr12:57527161|57527544 hsa-miR-6739-3p 0 1 0
chr12:57527161|57527544 hsa-miR-6830-5p 0 1 0
chr12:57527161|57527544 hsa-miR-6736-3p 0 1 0
chr12:57527161|57527544 hsa-miR-4776-5p 1 0 0
chr12:57527161|57527544 hsa-miR-664b-5p 1 1 0
chr12:57527161|57527544 hsa-miR-6870-3p 0 1 0
chr12:57527161|57527544 hsa-miR-208a-5p 0 1 0
chr12:57527161|57527544 hsa-miR-1180-5p 1 0 0
chr12:57527161|57527544 hsa-miR-6814-5p 0 1 0
chr12:57527161|57527544 hsa-miR-6802-3p 0 1 0
chr12:57527161|57527544 hsa-miR-3664-3p 0 1 0
chr12:57527161|57527544 hsa-miR-4433a-5p 0 1 0
chr12:57527161|57527544 hsa-miR-6798-3p 0 1 0
chr12:57527161|57527544 hsa-miR-4433b-5p 0 1 0
chr12:57527161|57527544 hsa-miR-5699-5p 0 1 0
chr12:57527161|57527544 hsa-miR-6841-5p 1 0 0
chr12:57527161|57527544 hsa-miR-3162-3p 1 0 0
chr12:57527161|57527544 hsa-miR-6752-5p 1 1 0
chr12:57527161|57527544 hsa-miR-6756-5p 1 0 0
chr12:57527161|57527544 hsa-miR-6803-5p 1 0 0
chr12:57527161|57527544 hsa-miR-6842-5p 0 1 0
chr12:57527161|57527544 hsa-miR-1237-5p 1 0 0
chr12:57527161|57527544 hsa-miR-328-5p 1 1 0
chr12:57527161|57527544 hsa-miR-6735-5p 1 0 0
chr12:57527161|57527544 hsa-miR-6738-5p 1 0 0
chr12:57527161|57527544 hsa-miR-6795-5p 1 1 0
chr12:57527161|57527544 hsa-miR-6846-5p 1 0 0
chr12:57527161|57527544 hsa-miR-6848-5p 1 0 0
chr12:57527161|57527544 hsa-miR-6885-5p 1 1 0
chr12:57527161|57527544 hsa-miR-939-5p 1 0 0
chr12:57527161|57527544 hsa-miR-10394-3p 1 0 0
chr12:57527161|57527544 hsa-miR-1266-5p 1 0 0
chr12:57527161|57527544 hsa-miR-6784-3p 0 1 0
chr12:57527161|57527544 hsa-miR-6862-3p 0 1 0
chr12:57527161|57527544 hsa-miR-6829-3p 0 1 0
chr12:57527161|57527544 hsa-miR-6827-3p 1 0 0
chr12:57527161|57527544 hsa-miR-4690-3p 1 0 0
chr12:57527161|57527544 hsa-miR-3136-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:57527161|57527544
ORF Type ORF1
Protein Length 60
Nucleotide Length 183
Protein Sequence MLAATLDPPSGTPPQVRMGVSRWDRTRCRIRDGSWESKAFSFIPELFLGAFGEALVLGWG
Nucleotide Sequence CTGCTGGCTGCCACCCTGGATCCCCCCTCGGGGACACCCCCCCAGGTGAGGATGGGGGTGAGTAGGTGGGACAGAACAAGATGTAGAATAAGAGATGGGAGCTGGGAATCAAAAGCTTTCAGTTTCATTCCTGAGCTCTTCCTTGGGGCCTTTGGGGAGGCCTTAGTTCTTGGCTGGGGGTAG
CircID chr12:57527161|57527544
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MAGGRMTARIGSVFNKHGLSHLRLQSDSGCESTINLLSILHA
Nucleotide Sequence TTGGCTGGGGGTAGGATGACTGCAAGAATTGGGTCTGTATTTAATAAGCATGGCCTATCTCACTTGAGGCTTCAGTCAGATAGTGGATGTGAAAGCACTATAAATCTGTTGAGTATTTTACACGCGTAA
CircID chr12:57527161|57527544
ORF Type ORF3
Protein Length 72
Nucleotide Length 216
Protein Sequence MQSSYPQPRTKASPKAPRKSSGMKLKAFDSQLPSLILHLVLSHLLTPILTWGGVPEGGSRVAASSAEFKAMR
Nucleotide Sequence TTGCAGTCATCCTACCCCCAGCCAAGAACTAAGGCCTCCCCAAAGGCCCCAAGGAAGAGCTCAGGAATGAAACTGAAAGCTTTTGATTCCCAGCTCCCATCTCTTATTCTACATCTTGTTCTGTCCCACCTACTCACCCCCATCCTCACCTGGGGGGGTGTCCCCGAGGGGGGATCCAGGGTGGCAGCCAGCAGCGCAGAATTTAAAGCTATGAGG
CircID chr12:57527161|57527544
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MLIKYRPNSCSHPTPSQELRPPQRPQGRAQE
Nucleotide Sequence ATGCTTATTAAATACAGACCCAATTCTTGCAGTCATCCTACCCCCAGCCAAGAACTAAGGCCTCCCCAAAGGCCCCAAGGAAGAGCTCAGGAATGA
CircID chr12:57527161|57527544
ORF Type ORF5
Protein Length 43
Nucleotide Length 132
Protein Sequence MIPSSHLLFYILFCPTYSPPSSPGGVSPRGDPGWQPAAQNLKL
Nucleotide Sequence TTGATTCCCAGCTCCCATCTCTTATTCTACATCTTGTTCTGTCCCACCTACTCACCCCCATCCTCACCTGGGGGGGTGTCCCCGAGGGGGGATCCAGGGTGGCAGCCAGCAGCGCAGAATTTAAAGCTATGA
CircID chr12:57527161|57527544
ORF Type ORF6
Protein Length 35
Nucleotide Length 108
Protein Sequence MGGTQDTGLRKKNDSNTYACKILNRFIVLSHPLSD
Nucleotide Sequence TTGGGGGGCACTCAGGACACAGGGCTAAGAAAAAAGAATGATTCTAACACTTACGCGTGTAAAATACTCAACAGATTTATAGTGCTTTCACATCCACTATCTGACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab