CircRNA Information

General Information
circRNA Basic Information
CircID chr12:57600998|57601296
Strand +
CircType exon
Host Gene ENSG00000166908.16;
Algorism CIRI2;
Sequence TGTGTAAGGATATCAATGAGGCCCATGAAGTAGACCTCCTTCTGGGGGGCTCCTGGGAGAGAGACCAACAATTCAGAGTAGGTTTAGTTCCAATTCCCTTTCTCCAGGAAGCAGTCAGTTTTGTTCTGAAAAGCTAATCAGGCTCTCCCCCAGCACTCTGGTCTCTGTCCTCCAGGAAAAATCCCCTCTCCACCCTTAAATTGTCCCGGTTCTCTCACCTTCAGCACTCCGGATGGCATAGACATCAATGAAGGACTCAAACTCTCCTGGGCCCAGGGGCCGATGGGAATGGATGTAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:57600998|57601296 hsa-miR-205-5p 0 0 1
chr12:57600998|57601296 hsa-miR-205-3p 0 0 1
chr12:57600998|57601296 hsa-miR-221-5p 0 0 1
chr12:57600998|57601296 hsa-miR-221-3p 0 0 1
chr12:57600998|57601296 hsa-miR-222-5p 0 0 1
chr12:57600998|57601296 hsa-miR-222-3p 0 0 1
chr12:57600998|57601296 hsa-miR-150-5p 0 0 1
chr12:57600998|57601296 hsa-miR-150-3p 0 0 1
chr12:57600998|57601296 hsa-miR-185-5p 0 0 1
chr12:57600998|57601296 hsa-miR-185-3p 0 0 1
chr12:57600998|57601296 hsa-miR-493-5p 0 0 1
chr12:57600998|57601296 hsa-miR-493-3p 0 0 1
chr12:57600998|57601296 hsa-miR-589-5p 0 0 1
chr12:57600998|57601296 hsa-miR-589-3p 0 0 1
chr12:57600998|57601296 hsa-miR-625-5p 0 0 1
chr12:57600998|57601296 hsa-miR-625-3p 0 0 1
chr12:57600998|57601296 hsa-miR-627-5p 0 0 1
chr12:57600998|57601296 hsa-miR-627-3p 0 0 1
chr12:57600998|57601296 hsa-miR-637 1 0 1
chr12:57600998|57601296 hsa-miR-1323 0 0 1
chr12:57600998|57601296 hsa-miR-765 0 0 1
chr12:57600998|57601296 hsa-miR-665 0 1 1
chr12:57600998|57601296 hsa-miR-934 0 0 1
chr12:57600998|57601296 hsa-miR-1203 0 0 1
chr12:57600998|57601296 hsa-miR-548e-5p 0 0 1
chr12:57600998|57601296 hsa-miR-548e-3p 0 0 1
chr12:57600998|57601296 hsa-miR-1290 0 0 1
chr12:57600998|57601296 hsa-miR-548o-3p 0 0 1
chr12:57600998|57601296 hsa-miR-1275 1 1 1
chr12:57600998|57601296 hsa-miR-548o 0 0 1
chr12:57600998|57601296 hsa-miR-1225-3p 0 0 1
chr12:57600998|57601296 hsa-miR-296-5p 0 0 1
chr12:57600998|57601296 hsa-miR-512-3p 0 1 1
chr12:57600998|57601296 hsa-miR-532-3p 0 0 1
chr12:57600998|57601296 hsa-miR-361-3p 0 1 1
chr12:57600998|57601296 hsa-miR-501-5p 0 0 1
chr12:57600998|57601296 hsa-miR-331-3p 1 1 1
chr12:57600998|57601296 hsa-miR-362-5p 0 0 1
chr12:57600998|57601296 hsa-miR-548a-3p 0 0 1
chr12:57600998|57601296 hsa-miR-516a-3p 0 0 1
chr12:57600998|57601296 hsa-miR-1308 0 0 1
chr12:57600998|57601296 hsa-miR-548f 0 0 1
chr12:57600998|57601296 hsa-miR-219-2-3p 0 0 1
chr12:57600998|57601296 hsa-miR-1201 0 0 1
chr12:57600998|57601296 hsa-miR-608 1 0 0
chr12:57600998|57601296 hsa-miR-632 1 0 0
chr12:57600998|57601296 hsa-miR-762 1 0 0
chr12:57600998|57601296 hsa-miR-892b 0 1 0
chr12:57600998|57601296 hsa-miR-924 1 0 0
chr12:57600998|57601296 hsa-miR-1293 1 0 0
chr12:57600998|57601296 hsa-miR-3132 1 0 0
chr12:57600998|57601296 hsa-miR-3138 1 0 0
chr12:57600998|57601296 hsa-miR-3153 0 1 0
chr12:57600998|57601296 hsa-miR-3154 1 1 0
chr12:57600998|57601296 hsa-miR-4298 1 0 0
chr12:57600998|57601296 hsa-miR-4292 0 1 0
chr12:57600998|57601296 hsa-miR-3652 1 0 0
chr12:57600998|57601296 hsa-miR-3945 1 0 0
chr12:57600998|57601296 hsa-miR-4448 1 0 0
chr12:57600998|57601296 hsa-miR-4512 1 0 0
chr12:57600998|57601296 hsa-miR-4515 1 0 0
chr12:57600998|57601296 hsa-miR-4651 1 0 0
chr12:57600998|57601296 hsa-miR-4656 1 0 0
chr12:57600998|57601296 hsa-miR-4658 1 0 0
chr12:57600998|57601296 hsa-miR-4739 1 0 0
chr12:57600998|57601296 hsa-miR-5090 1 0 0
chr12:57600998|57601296 hsa-miR-5192 1 1 0
chr12:57600998|57601296 hsa-miR-5698 1 1 0
chr12:57600998|57601296 hsa-miR-6075 1 0 0
chr12:57600998|57601296 hsa-miR-6086 1 0 0
chr12:57600998|57601296 hsa-miR-6133 1 0 0
chr12:57600998|57601296 hsa-miR-6745 1 0 0
chr12:57600998|57601296 hsa-miR-8052 1 0 0
chr12:57600998|57601296 hsa-miR-8078 1 0 0
chr12:57600998|57601296 hsa-miR-8085 1 0 0
chr12:57600998|57601296 hsa-miR-8089 1 1 0
chr12:57600998|57601296 hsa-miR-12119 1 0 0
chr12:57600998|57601296 hsa-miR-211-3p 1 0 0
chr12:57600998|57601296 hsa-miR-4433b-3p 1 0 0
chr12:57600998|57601296 hsa-miR-6734-5p 1 0 0
chr12:57600998|57601296 hsa-miR-4731-5p 1 1 0
chr12:57600998|57601296 hsa-miR-6840-3p 0 1 0
chr12:57600998|57601296 hsa-miR-504-3p 1 1 0
chr12:57600998|57601296 hsa-miR-7106-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6894-5p 1 1 0
chr12:57600998|57601296 hsa-miR-6857-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6799-5p 1 0 0
chr12:57600998|57601296 hsa-miR-8071 1 0 0
chr12:57600998|57601296 hsa-miR-766-5p 1 0 0
chr12:57600998|57601296 hsa-miR-7851-3p 1 0 0
chr12:57600998|57601296 hsa-miR-4786-5p 0 1 0
chr12:57600998|57601296 hsa-miR-6089 1 0 0
chr12:57600998|57601296 hsa-miR-6757-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6880-5p 1 0 0
chr12:57600998|57601296 hsa-miR-7847-3p 1 0 0
chr12:57600998|57601296 hsa-miR-769-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6746-5p 1 0 0
chr12:57600998|57601296 hsa-miR-7154-3p 1 0 0
chr12:57600998|57601296 hsa-miR-6741-5p 1 0 0
chr12:57600998|57601296 hsa-miR-4655-5p 1 0 0
chr12:57600998|57601296 hsa-miR-197-5p 1 0 0
chr12:57600998|57601296 hsa-miR-7110-3p 0 1 0
chr12:57600998|57601296 hsa-miR-3180-3p 1 0 0
chr12:57600998|57601296 hsa-miR-6748-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6772-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6829-5p 1 0 0
chr12:57600998|57601296 hsa-miR-3190-3p 1 0 0
chr12:57600998|57601296 hsa-miR-6798-5p 1 0 0
chr12:57600998|57601296 hsa-miR-3126-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6782-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6810-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6786-5p 1 0 0
chr12:57600998|57601296 hsa-miR-7109-5p 1 0 0
chr12:57600998|57601296 hsa-miR-1226-5p 1 0 0
chr12:57600998|57601296 hsa-miR-4738-3p 1 0 0
chr12:57600998|57601296 hsa-miR-1229-5p 1 0 0
chr12:57600998|57601296 hsa-miR-193b-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6784-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6753-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6771-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6834-5p 1 0 0
chr12:57600998|57601296 hsa-miR-149-3p 1 0 0
chr12:57600998|57601296 hsa-miR-6824-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6892-5p 1 0 0
chr12:57600998|57601296 hsa-miR-5010-5p 1 0 0
chr12:57600998|57601296 hsa-miR-181b-5p 0 1 0
chr12:57600998|57601296 hsa-miR-6895-3p 0 1 0
chr12:57600998|57601296 hsa-miR-483-5p 1 0 0
chr12:57600998|57601296 hsa-miR-5004-5p 0 1 0
chr12:57600998|57601296 hsa-miR-219a-2-3p 1 0 0
chr12:57600998|57601296 hsa-miR-1233-5p 1 0 0
chr12:57600998|57601296 hsa-miR-4763-3p 1 0 0
chr12:57600998|57601296 hsa-miR-6778-5p 1 1 0
chr12:57600998|57601296 hsa-miR-6865-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6870-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6775-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6737-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6752-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6756-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6819-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6851-5p 1 0 0
chr12:57600998|57601296 hsa-miR-7110-5p 1 0 0
chr12:57600998|57601296 hsa-miR-11181-3p 1 0 0
chr12:57600998|57601296 hsa-miR-6751-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6763-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6779-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6797-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6875-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6879-5p 1 0 0
chr12:57600998|57601296 hsa-miR-7111-5p 1 0 0
chr12:57600998|57601296 hsa-miR-4728-5p 1 0 0
chr12:57600998|57601296 hsa-miR-5196-5p 1 0 0
chr12:57600998|57601296 hsa-miR-4632-5p 1 0 0
chr12:57600998|57601296 hsa-miR-4726-5p 1 0 0
chr12:57600998|57601296 hsa-miR-4749-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6735-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6794-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6795-5p 1 1 0
chr12:57600998|57601296 hsa-miR-6846-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6848-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6858-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6887-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6889-5p 1 0 0
chr12:57600998|57601296 hsa-miR-4723-5p 1 0 0
chr12:57600998|57601296 hsa-miR-939-5p 1 0 0
chr12:57600998|57601296 hsa-miR-3085-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6731-5p 0 1 0
chr12:57600998|57601296 hsa-miR-6758-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6773-5p 1 1 0
chr12:57600998|57601296 hsa-miR-7843-5p 1 1 0
chr12:57600998|57601296 hsa-miR-4665-5p 1 1 0
chr12:57600998|57601296 hsa-miR-6791-3p 1 0 0
chr12:57600998|57601296 hsa-miR-3679-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6750-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6724-5p 1 1 0
chr12:57600998|57601296 hsa-miR-6791-5p 0 1 0
chr12:57600998|57601296 hsa-miR-6529-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6805-3p 1 0 0
chr12:57600998|57601296 hsa-miR-10392-3p 0 1 0
chr12:57600998|57601296 hsa-miR-6744-3p 1 0 0
chr12:57600998|57601296 hsa-miR-6848-3p 0 1 0
chr12:57600998|57601296 hsa-miR-6500-5p 1 0 0
chr12:57600998|57601296 hsa-miR-6764-5p 1 0 0
chr12:57600998|57601296 hsa-miR-181d-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:57600998|57601296
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MGERPTIQSRFSSNSLSPGSSQFCSEKLIRLSPSTLVSVLQEKSPLHP
Nucleotide Sequence CTGGGAGAGAGACCAACAATTCAGAGTAGGTTTAGTTCCAATTCCCTTTCTCCAGGAAGCAGTCAGTTTTGTTCTGAAAAGCTAATCAGGCTCTCCCCCAGCACTCTGGTCTCTGTCCTCCAGGAAAAATCCCCTCTCCACCCTTAA
CircID chr12:57600998|57601296
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MGGSWERDQQFRVGLVPIPFLQEAVSFVLKS
Nucleotide Sequence CTGGGGGGCTCCTGGGAGAGAGACCAACAATTCAGAGTAGGTTTAGTTCCAATTCCCTTTCTCCAGGAAGCAGTCAGTTTTGTTCTGAAAAGCTAA
CircID chr12:57600998|57601296
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MSSRKNPLSTLKLSRFSHLQHSGWHRHQ
Nucleotide Sequence CTGTCCTCCAGGAAAAATCCCCTCTCCACCCTTAAATTGTCCCGGTTCTCTCACCTTCAGCACTCCGGATGGCATAGACATCAATGA
CircID chr12:57600998|57601296
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MSPSLMSMPSGVLKVREPGQFKGGEGIFPGGQRPECWGRA
Nucleotide Sequence TTGAGTCCTTCATTGATGTCTATGCCATCCGGAGTGCTGAAGGTGAGAGAACCGGGACAATTTAAGGGTGGAGAGGGGATTTTTCCTGGAGGACAGAGACCAGAGTGCTGGGGGAGAGCCTGA
CircID chr12:57600998|57601296
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence MTASWRKGIGTKPTLNCWSLSQEPPRRRSTSWASLISLH
Nucleotide Sequence CTGACTGCTTCCTGGAGAAAGGGAATTGGAACTAAACCTACTCTGAATTGTTGGTCTCTCTCCCAGGAGCCCCCCAGAAGGAGGTCTACTTCATGGGCCTCATTGATATCCTTACAC
CircID chr12:57600998|57601296
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MGPGEFESFIDVYAIRSAEGERTGTI
Nucleotide Sequence CTGGGCCCAGGAGAGTTTGAGTCCTTCATTGATGTCTATGCCATCCGGAGTGCTGAAGGTGAGAGAACCGGGACAATTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab