CircRNA Information

General Information
circRNA Basic Information
CircID chr12:57613050|57613359
Strand +
CircType exon
Host Gene ENSG00000240771.5;
Algorism CIRI2;
Sequence CTGCGTCTTATCTCCAGGGCCCTCCAACAGTGTGGTCAGCAAGGTCAGTTCCGGCAGCTCCTCTCCTGTGGCTAGAGCTGGCTCCAACATCCAGTTCTGGGGGCCAGAAATCAAGTGTCAGAGGTCGGGGACAGTAGCTGGGTGGCCCCAACTTGCCCTCTCTGCCAGTGTCCTTCATAGATGTCCCACATGCTTTGGTGCCGTTCCCTGCTCACCTCATATGGTCCTGCCTGACCACTGTCTGCCTCAGTTTCCACACTGAGACAATGTTTGGAATGATCCAACCATCTCCTCAGGCCACTGACGGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:57613050|57613359 hsa-miR-22-5p 0 0 1
chr12:57613050|57613359 hsa-miR-22-3p 0 0 1
chr12:57613050|57613359 hsa-miR-208a-5p 0 0 1
chr12:57613050|57613359 hsa-miR-208a-3p 0 0 1
chr12:57613050|57613359 hsa-miR-558 0 0 1
chr12:57613050|57613359 hsa-miR-620 0 0 1
chr12:57613050|57613359 hsa-miR-708-5p 0 0 1
chr12:57613050|57613359 hsa-miR-708-3p 0 0 1
chr12:57613050|57613359 hsa-miR-208b-5p 0 0 1
chr12:57613050|57613359 hsa-miR-208b-3p 0 0 1
chr12:57613050|57613359 hsa-miR-940 1 0 1
chr12:57613050|57613359 hsa-miR-1208 0 0 1
chr12:57613050|57613359 hsa-miR-1286 0 0 1
chr12:57613050|57613359 hsa-miR-1291 0 0 1
chr12:57613050|57613359 hsa-miR-1243 0 0 1
chr12:57613050|57613359 hsa-miR-1251-5p 0 0 1
chr12:57613050|57613359 hsa-miR-1251-3p 0 0 1
chr12:57613050|57613359 hsa-miR-1270 0 0 1
chr12:57613050|57613359 hsa-miR-1292-5p 0 0 1
chr12:57613050|57613359 hsa-miR-1292-3p 0 0 1
chr12:57613050|57613359 hsa-miR-1252-5p 0 0 1
chr12:57613050|57613359 hsa-miR-1252-3p 0 0 1
chr12:57613050|57613359 hsa-miR-1197 0 0 1
chr12:57613050|57613359 hsa-miR-1324 0 0 1
chr12:57613050|57613359 hsa-miR-1827 0 0 1
chr12:57613050|57613359 hsa-miR-299-3p 0 0 1
chr12:57613050|57613359 hsa-miR-330-3p 0 0 1
chr12:57613050|57613359 hsa-miR-361-3p 0 0 1
chr12:57613050|57613359 hsa-miR-28-5p 0 0 1
chr12:57613050|57613359 hsa-miR-628-5p 0 0 1
chr12:57613050|57613359 hsa-miR-1302 0 0 1
chr12:57613050|57613359 hsa-miR-768-5p 0 0 1
chr12:57613050|57613359 hsa-miR-602 1 0 0
chr12:57613050|57613359 hsa-miR-762 1 0 0
chr12:57613050|57613359 hsa-miR-2861 1 0 0
chr12:57613050|57613359 hsa-miR-3138 1 0 0
chr12:57613050|57613359 hsa-miR-4298 1 0 0
chr12:57613050|57613359 hsa-miR-3911 1 0 0
chr12:57613050|57613359 hsa-miR-4496 1 0 0
chr12:57613050|57613359 hsa-miR-4505 1 0 0
chr12:57613050|57613359 hsa-miR-4513 1 0 0
chr12:57613050|57613359 hsa-miR-4514 1 0 0
chr12:57613050|57613359 hsa-miR-4533 1 0 0
chr12:57613050|57613359 hsa-miR-4654 1 0 0
chr12:57613050|57613359 hsa-miR-4673 1 0 0
chr12:57613050|57613359 hsa-miR-4688 1 0 0
chr12:57613050|57613359 hsa-miR-4706 1 0 0
chr12:57613050|57613359 hsa-miR-4721 1 0 0
chr12:57613050|57613359 hsa-miR-4739 1 0 0
chr12:57613050|57613359 hsa-miR-4784 1 0 0
chr12:57613050|57613359 hsa-miR-5090 1 0 0
chr12:57613050|57613359 hsa-miR-8057 1 0 0
chr12:57613050|57613359 hsa-miR-8080 1 0 0
chr12:57613050|57613359 hsa-miR-8089 1 0 0
chr12:57613050|57613359 hsa-miR-12119 1 0 0
chr12:57613050|57613359 hsa-miR-12120 1 0 0
chr12:57613050|57613359 hsa-miR-370-3p 1 0 0
chr12:57613050|57613359 hsa-miR-6765-5p 1 0 0
chr12:57613050|57613359 hsa-miR-4687-3p 1 0 0
chr12:57613050|57613359 hsa-miR-6799-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6515-5p 1 0 0
chr12:57613050|57613359 hsa-miR-197-5p 1 0 0
chr12:57613050|57613359 hsa-miR-7845-5p 1 0 0
chr12:57613050|57613359 hsa-miR-3151-5p 1 0 0
chr12:57613050|57613359 hsa-miR-3180-3p 1 0 0
chr12:57613050|57613359 hsa-miR-6796-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6829-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6732-5p 1 0 0
chr12:57613050|57613359 hsa-miR-3190-3p 1 0 0
chr12:57613050|57613359 hsa-miR-2467-3p 1 0 0
chr12:57613050|57613359 hsa-miR-5008-5p 1 0 0
chr12:57613050|57613359 hsa-miR-5088-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6853-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6763-3p 1 0 0
chr12:57613050|57613359 hsa-miR-6757-3p 1 0 0
chr12:57613050|57613359 hsa-miR-6501-5p 1 0 0
chr12:57613050|57613359 hsa-miR-149-3p 1 0 0
chr12:57613050|57613359 hsa-miR-3616-3p 1 0 0
chr12:57613050|57613359 hsa-miR-3065-3p 1 0 0
chr12:57613050|57613359 hsa-miR-7112-5p 1 0 0
chr12:57613050|57613359 hsa-miR-7160-3p 1 0 0
chr12:57613050|57613359 hsa-miR-3191-3p 1 0 0
chr12:57613050|57613359 hsa-miR-2355-3p 1 0 0
chr12:57613050|57613359 hsa-miR-6832-5p 1 0 0
chr12:57613050|57613359 hsa-miR-216a-3p 1 0 0
chr12:57613050|57613359 hsa-miR-1296-5p 1 0 0
chr12:57613050|57613359 hsa-miR-3177-3p 1 0 0
chr12:57613050|57613359 hsa-miR-1207-5p 1 0 0
chr12:57613050|57613359 hsa-miR-1233-5p 1 0 0
chr12:57613050|57613359 hsa-miR-4763-3p 1 0 0
chr12:57613050|57613359 hsa-miR-6778-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6812-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6775-5p 1 0 0
chr12:57613050|57613359 hsa-miR-3180 1 0 0
chr12:57613050|57613359 hsa-miR-5001-5p 1 0 0
chr12:57613050|57613359 hsa-miR-10401-5p 1 0 0
chr12:57613050|57613359 hsa-miR-1249-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6722-3p 1 0 0
chr12:57613050|57613359 hsa-miR-6779-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6780a-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6797-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6808-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6879-5p 1 0 0
chr12:57613050|57613359 hsa-miR-5196-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6836-5p 1 0 0
chr12:57613050|57613359 hsa-miR-1909-3p 1 0 0
chr12:57613050|57613359 hsa-miR-328-5p 1 0 0
chr12:57613050|57613359 hsa-miR-4649-5p 1 0 0
chr12:57613050|57613359 hsa-miR-4745-5p 1 0 0
chr12:57613050|57613359 hsa-miR-4749-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6729-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6795-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6858-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6887-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6831-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6885-5p 1 0 0
chr12:57613050|57613359 hsa-miR-939-5p 1 0 0
chr12:57613050|57613359 hsa-miR-4769-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6511a-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6511b-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6731-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6856-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6785-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6762-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6862-3p 1 0 0
chr12:57613050|57613359 hsa-miR-6718-5p 1 0 0
chr12:57613050|57613359 hsa-miR-6837-5p 1 0 0
chr12:57613050|57613359 hsa-miR-9851-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:57613050|57613359
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MGARNQVSEVGDSSWVAPTCPLCQCPS
Nucleotide Sequence CTGGGGGCCAGAAATCAAGTGTCAGAGGTCGGGGACAGTAGCTGGGTGGCCCCAACTTGCCCTCTCTGCCAGTGTCCTTCATAG
CircID chr12:57613050|57613359
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MGGPNLPSLPVSFIDVPHALVPFPAHLIWSCLTTVCLSFHTETMFGMIQPSPQATDG
Nucleotide Sequence CTGGGTGGCCCCAACTTGCCCTCTCTGCCAGTGTCCTTCATAGATGTCCCACATGCTTTGGTGCCGTTCCCTGCTCACCTCATATGGTCCTGCCTGACCACTGTCTGCCTCAGTTTCCACACTGAGACAATGTTTGGAATGATCCAACCATCTCCTCAGGCCACTGACGGG
CircID chr12:57613050|57613359
ORF Type ORF3
Protein Length 56
Nucleotide Length 171
Protein Sequence MKDTGREGKLGPPSYCPRPLTLDFWPPELDVGASSSHRRGAAGTDLADHTVGGPWR
Nucleotide Sequence ATGAAGGACACTGGCAGAGAGGGCAAGTTGGGGCCACCCAGCTACTGTCCCCGACCTCTGACACTTGATTTCTGGCCCCCAGAACTGGATGTTGGAGCCAGCTCTAGCCACAGGAGAGGAGCTGCCGGAACTGACCTTGCTGACCACACTGTTGGAGGGCCCTGGAGATAA
CircID chr12:57613050|57613359
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MISGPQNWMLEPALATGEELPELTLLTTLLEGPGDKTQ
Nucleotide Sequence TTGATTTCTGGCCCCCAGAACTGGATGTTGGAGCCAGCTCTAGCCACAGGAGAGGAGCTGCCGGAACTGACCTTGCTGACCACACTGTTGGAGGGCCCTGGAGATAAGACGCAG
CircID chr12:57613050|57613359
ORF Type ORF5
Protein Length 61
Nucleotide Length 186
Protein Sequence MRRWLDHSKHCLSVETEADSGQAGPYEVSRERHQSMWDIYEGHWQRGQVGATQLLSPTSDT
Nucleotide Sequence CTGAGGAGATGGTTGGATCATTCCAAACATTGTCTCAGTGTGGAAACTGAGGCAGACAGTGGTCAGGCAGGACCATATGAGGTGAGCAGGGAACGGCACCAAAGCATGTGGGACATCTATGAAGGACACTGGCAGAGAGGGCAAGTTGGGGCCACCCAGCTACTGTCCCCGACCTCTGACACTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab