CircRNA Information

General Information
circRNA Basic Information
CircID chr12:57758971|57759179
Strand -
CircType exon
Host Gene ENSG00000139266.5;
Algorism CIRI2;
Sequence CAGCTGGACAAGGTGTTTGGGGCATGCTGCCCCCGTCACCGAGGATCTGTGTGGGTAGCCTCAAGCTGGAGACATTGTCTGGCCTCACTGCCCACTGGGTAGAGACACCTGGATGACATTTCAGTACCCGCTGGCAGCTCCTCCCACTCATCCAGAGACGGCCGGTGGGCAGGCGGGGAGAGCAGCTTTCCTTCCCTGGAGAGAACCGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:57758971|57759179 hsa-miR-22-5p 0 0 1
chr12:57758971|57759179 hsa-miR-22-3p 0 0 1
chr12:57758971|57759179 hsa-miR-107 0 0 1
chr12:57758971|57759179 hsa-miR-198 0 0 1
chr12:57758971|57759179 hsa-miR-34a-5p 0 0 1
chr12:57758971|57759179 hsa-miR-34a-3p 0 0 1
chr12:57758971|57759179 hsa-miR-320a-5p 0 0 1
chr12:57758971|57759179 hsa-miR-320a-3p 0 0 1
chr12:57758971|57759179 hsa-miR-326 0 0 1
chr12:57758971|57759179 hsa-miR-449a 0 0 1
chr12:57758971|57759179 hsa-miR-558 0 0 1
chr12:57758971|57759179 hsa-miR-593-5p 0 0 1
chr12:57758971|57759179 hsa-miR-593-3p 0 0 1
chr12:57758971|57759179 hsa-miR-449b-5p 0 0 1
chr12:57758971|57759179 hsa-miR-449b-3p 0 0 1
chr12:57758971|57759179 hsa-miR-766-5p 0 0 1
chr12:57758971|57759179 hsa-miR-766-3p 0 0 1
chr12:57758971|57759179 hsa-miR-765 0 0 1
chr12:57758971|57759179 hsa-miR-708-5p 0 0 1
chr12:57758971|57759179 hsa-miR-708-3p 0 0 1
chr12:57758971|57759179 hsa-miR-1202 0 0 1
chr12:57758971|57759179 hsa-miR-1304-5p 0 0 1
chr12:57758971|57759179 hsa-miR-1304-3p 0 0 1
chr12:57758971|57759179 hsa-miR-1255a 0 0 1
chr12:57758971|57759179 hsa-miR-1252-5p 0 0 1
chr12:57758971|57759179 hsa-miR-1252-3p 0 0 1
chr12:57758971|57759179 hsa-miR-486-3p 0 0 1
chr12:57758971|57759179 hsa-miR-485-5p 0 0 1
chr12:57758971|57759179 hsa-miR-28-5p 0 1 1
chr12:57758971|57759179 hsa-miR-320b 0 0 1
chr12:57758971|57759179 hsa-miR-320c 0 0 1
chr12:57758971|57759179 hsa-miR-330-5p 0 0 1
chr12:57758971|57759179 hsa-miR-320d 0 0 1
chr12:57758971|57759179 hsa-miR-34c-5p 0 1 1
chr12:57758971|57759179 hsa-miR-1280 0 0 1
chr12:57758971|57759179 hsa-miR-103 0 0 1
chr12:57758971|57759179 hsa-miR-1255b 0 0 1
chr12:57758971|57759179 hsa-miR-203 0 0 1
chr12:57758971|57759179 hsa-miR-663a 1 0 0
chr12:57758971|57759179 hsa-miR-760 1 0 0
chr12:57758971|57759179 hsa-miR-2117 0 1 0
chr12:57758971|57759179 hsa-miR-3139 0 1 0
chr12:57758971|57759179 hsa-miR-3166 0 1 0
chr12:57758971|57759179 hsa-miR-3188 1 0 0
chr12:57758971|57759179 hsa-miR-4316 0 1 0
chr12:57758971|57759179 hsa-miR-3689c 1 1 0
chr12:57758971|57759179 hsa-miR-4498 1 0 0
chr12:57758971|57759179 hsa-miR-4533 1 1 0
chr12:57758971|57759179 hsa-miR-4648 1 0 0
chr12:57758971|57759179 hsa-miR-4706 1 0 0
chr12:57758971|57759179 hsa-miR-4737 1 0 0
chr12:57758971|57759179 hsa-miR-4739 1 1 0
chr12:57758971|57759179 hsa-miR-4741 1 0 0
chr12:57758971|57759179 hsa-miR-4784 1 0 0
chr12:57758971|57759179 hsa-miR-6077 1 0 0
chr12:57758971|57759179 hsa-miR-6133 1 0 0
chr12:57758971|57759179 hsa-miR-4435 1 0 0
chr12:57758971|57759179 hsa-miR-4433b-3p 1 0 0
chr12:57758971|57759179 hsa-miR-7106-5p 1 0 0
chr12:57758971|57759179 hsa-miR-6894-5p 1 0 0
chr12:57758971|57759179 hsa-miR-1972 1 0 0
chr12:57758971|57759179 hsa-miR-6799-5p 1 0 0
chr12:57758971|57759179 hsa-miR-1227-5p 1 0 0
chr12:57758971|57759179 hsa-miR-6089 1 0 0
chr12:57758971|57759179 hsa-miR-3192-5p 1 0 0
chr12:57758971|57759179 hsa-miR-6776-5p 1 1 0
chr12:57758971|57759179 hsa-miR-6845-3p 0 1 0
chr12:57758971|57759179 hsa-miR-6742-5p 1 0 0
chr12:57758971|57759179 hsa-miR-3190-3p 1 0 0
chr12:57758971|57759179 hsa-miR-6782-5p 1 0 0
chr12:57758971|57759179 hsa-miR-5008-5p 1 0 0
chr12:57758971|57759179 hsa-miR-6882-3p 0 1 0
chr12:57758971|57759179 hsa-miR-7109-5p 1 0 0
chr12:57758971|57759179 hsa-miR-4763-5p 0 1 0
chr12:57758971|57759179 hsa-miR-7113-3p 0 1 0
chr12:57758971|57759179 hsa-miR-4743-5p 1 0 0
chr12:57758971|57759179 hsa-miR-149-3p 1 0 0
chr12:57758971|57759179 hsa-miR-194-3p 0 1 0
chr12:57758971|57759179 hsa-miR-1225-5p 1 0 0
chr12:57758971|57759179 hsa-miR-6743-3p 1 1 0
chr12:57758971|57759179 hsa-miR-6867-3p 0 1 0
chr12:57758971|57759179 hsa-miR-597-3p 0 1 0
chr12:57758971|57759179 hsa-miR-4485-5p 0 1 0
chr12:57758971|57759179 hsa-miR-1233-5p 1 1 0
chr12:57758971|57759179 hsa-miR-1273h-5p 1 0 0
chr12:57758971|57759179 hsa-miR-3689b-3p 1 1 0
chr12:57758971|57759179 hsa-miR-4763-3p 1 0 0
chr12:57758971|57759179 hsa-miR-6778-5p 1 1 0
chr12:57758971|57759179 hsa-miR-1343-5p 1 1 0
chr12:57758971|57759179 hsa-miR-6726-5p 1 0 0
chr12:57758971|57759179 hsa-miR-6756-5p 1 0 0
chr12:57758971|57759179 hsa-miR-6813-5p 1 0 0
chr12:57758971|57759179 hsa-miR-1249-5p 1 0 0
chr12:57758971|57759179 hsa-miR-6779-5p 1 1 0
chr12:57758971|57759179 hsa-miR-6780a-5p 1 1 0
chr12:57758971|57759179 hsa-miR-4728-5p 1 0 0
chr12:57758971|57759179 hsa-miR-1909-3p 1 0 0
chr12:57758971|57759179 hsa-miR-3689a-3p 0 1 0
chr12:57758971|57759179 hsa-miR-4745-3p 1 0 0
chr12:57758971|57759179 hsa-miR-6735-5p 0 1 0
chr12:57758971|57759179 hsa-miR-6883-5p 1 0 0
chr12:57758971|57759179 hsa-miR-939-5p 1 0 0
chr12:57758971|57759179 hsa-miR-1238-5p 1 1 0
chr12:57758971|57759179 hsa-miR-4758-5p 1 1 0
chr12:57758971|57759179 hsa-miR-4633-3p 1 0 0
chr12:57758971|57759179 hsa-miR-30c-1-3p 1 0 0
chr12:57758971|57759179 hsa-miR-4747-5p 0 1 0
chr12:57758971|57759179 hsa-miR-4472 1 0 0
chr12:57758971|57759179 hsa-miR-6766-5p 0 1 0
chr12:57758971|57759179 hsa-miR-6785-5p 1 0 0
chr12:57758971|57759179 hsa-miR-5591-5p 1 0 0
chr12:57758971|57759179 hsa-miR-10401-3p 0 1 0
chr12:57758971|57759179 hsa-miR-3130-5p 0 1 0
chr12:57758971|57759179 hsa-miR-6500-5p 1 0 0
chr12:57758971|57759179 hsa-miR-4482-5p 0 1 0
chr12:57758971|57759179 hsa-miR-3059-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:57758971|57759179
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MDKVFGACCPRHRGSVWVASSWRHCLASLPTG
Nucleotide Sequence CTGGACAAGGTGTTTGGGGCATGCTGCCCCCGTCACCGAGGATCTGTGTGGGTAGCCTCAAGCTGGAGACATTGTCTGGCCTCACTGCCCACTGGGTAG
CircID chr12:57758971|57759179
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MDDISVPAGSSSHSSRDGRWAGGESSFPSLERT
Nucleotide Sequence CTGGATGACATTTCAGTACCCGCTGGCAGCTCCTCCCACTCATCCAGAGACGGCCGGTGGGCAGGCGGGGAGAGCAGCTTTCCTTCCCTGGAGAGAACC
CircID chr12:57758971|57759179
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MGRDTWMTFQYPLAAPPTHPETAGGQAGRAAFLPWREP
Nucleotide Sequence CTGGGTAGAGACACCTGGATGACATTTCAGTACCCGCTGGCAGCTCCTCCCACTCATCCAGAGACGGCCGGTGGGCAGGCGGGGAGAGCAGCTTTCCTTCCCTGGAGAGAACCG
CircID chr12:57758971|57759179
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MLPPSPRICVGSLKLETLSGLTAHWVETPG
Nucleotide Sequence ATGCTGCCCCCGTCACCGAGGATCTGTGTGGGTAGCCTCAAGCTGGAGACATTGTCTGGCCTCACTGCCCACTGGGTAGAGACACCTGGATGA
CircID chr12:57758971|57759179
ORF Type ORF5
Protein Length 49
Nucleotide Length 150
Protein Sequence MLSPPAHRPSLDEWEELPAGTEMSSRCLYPVGSEARQCLQLEATHTDPR
Nucleotide Sequence CTGCTCTCCCCGCCTGCCCACCGGCCGTCTCTGGATGAGTGGGAGGAGCTGCCAGCGGGTACTGAAATGTCATCCAGGTGTCTCTACCCAGTGGGCAGTGAGGCCAGACAATGTCTCCAGCTTGAGGCTACCCACACAGATCCTCGGTGA
CircID chr12:57758971|57759179
ORF Type ORF6
Protein Length 57
Nucleotide Length 171
Protein Sequence MPTGRLWMSGRSCQRVLKCHPGVSTQWAVRPDNVSSLRLPTQILGDGGSMPQTPCPA
Nucleotide Sequence CTGCCCACCGGCCGTCTCTGGATGAGTGGGAGGAGCTGCCAGCGGGTACTGAAATGTCATCCAGGTGTCTCTACCCAGTGGGCAGTGAGGCCAGACAATGTCTCCAGCTTGAGGCTACCCACACAGATCCTCGGTGACGGGGGCAGCATGCCCCAAACACCTTGTCCAGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab