CircRNA Information

General Information
circRNA Basic Information
CircID chr12:57941600|57941779
Strand +
CircType exon
Host Gene ENSG00000166896.6;
Algorism CIRI2;
Sequence CTGGCAAGAGACGTGTTGCTGCTGCAGCTGCTCCCCTGCCGCGGGGCCCCGCCGGCGCTCGTCCGGAGCTCCCGCCATGCCTCCCGCAGACCTCGCCGCTGCTTCCTCCTGGCTCAGGCGGCCAGAGCGAGACTGGGAAAGGTAACCTCCCTCCCGCCAACGCGACCGCCCAGGCCCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:57941600|57941779 hsa-miR-15a-5p 0 0 1
chr12:57941600|57941779 hsa-miR-15a-3p 0 0 1
chr12:57941600|57941779 hsa-miR-107 0 0 1
chr12:57941600|57941779 hsa-miR-15b-5p 0 0 1
chr12:57941600|57941779 hsa-miR-15b-3p 0 0 1
chr12:57941600|57941779 hsa-miR-195-5p 0 0 1
chr12:57941600|57941779 hsa-miR-195-3p 0 0 1
chr12:57941600|57941779 hsa-miR-424-5p 0 0 1
chr12:57941600|57941779 hsa-miR-424-3p 0 0 1
chr12:57941600|57941779 hsa-miR-497-5p 0 0 1
chr12:57941600|57941779 hsa-miR-497-3p 0 0 1
chr12:57941600|57941779 hsa-miR-503-5p 0 0 1
chr12:57941600|57941779 hsa-miR-503-3p 0 0 1
chr12:57941600|57941779 hsa-miR-646 0 1 1
chr12:57941600|57941779 hsa-miR-650 1 0 1
chr12:57941600|57941779 hsa-miR-661 1 0 1
chr12:57941600|57941779 hsa-miR-744-5p 0 0 1
chr12:57941600|57941779 hsa-miR-744-3p 0 0 1
chr12:57941600|57941779 hsa-miR-665 0 1 1
chr12:57941600|57941779 hsa-miR-920 0 1 1
chr12:57941600|57941779 hsa-miR-939-5p 0 0 1
chr12:57941600|57941779 hsa-miR-939-3p 0 0 1
chr12:57941600|57941779 hsa-miR-1202 0 0 1
chr12:57941600|57941779 hsa-miR-1306-5p 0 0 1
chr12:57941600|57941779 hsa-miR-1306-3p 0 0 1
chr12:57941600|57941779 hsa-miR-1321 0 0 1
chr12:57941600|57941779 hsa-miR-296-5p 0 0 1
chr12:57941600|57941779 hsa-miR-1184 0 1 1
chr12:57941600|57941779 hsa-miR-339-3p 0 0 1
chr12:57941600|57941779 hsa-miR-409-5p 0 0 1
chr12:57941600|57941779 hsa-miR-1207-5p 0 1 1
chr12:57941600|57941779 hsa-miR-103 0 0 1
chr12:57941600|57941779 hsa-miR-16 0 0 1
chr12:57941600|57941779 hsa-miR-720 0 0 1
chr12:57941600|57941779 hsa-miR-663 0 0 1
chr12:57941600|57941779 hsa-miR-608 1 0 0
chr12:57941600|57941779 hsa-miR-637 1 0 0
chr12:57941600|57941779 hsa-miR-663a 1 1 0
chr12:57941600|57941779 hsa-miR-762 1 0 0
chr12:57941600|57941779 hsa-miR-1182 1 0 0
chr12:57941600|57941779 hsa-miR-1231 1 0 0
chr12:57941600|57941779 hsa-miR-1203 1 0 0
chr12:57941600|57941779 hsa-miR-1268a 1 0 0
chr12:57941600|57941779 hsa-miR-2861 1 1 0
chr12:57941600|57941779 hsa-miR-3125 1 1 0
chr12:57941600|57941779 hsa-miR-4298 1 0 0
chr12:57941600|57941779 hsa-miR-3612 0 1 0
chr12:57941600|57941779 hsa-miR-3916 1 1 0
chr12:57941600|57941779 hsa-miR-1268b 1 0 0
chr12:57941600|57941779 hsa-miR-4483 1 0 0
chr12:57941600|57941779 hsa-miR-4492 1 0 0
chr12:57941600|57941779 hsa-miR-4510 1 0 0
chr12:57941600|57941779 hsa-miR-4533 1 0 0
chr12:57941600|57941779 hsa-miR-3960 1 1 0
chr12:57941600|57941779 hsa-miR-4706 1 0 0
chr12:57941600|57941779 hsa-miR-4721 1 0 0
chr12:57941600|57941779 hsa-miR-4734 0 1 0
chr12:57941600|57941779 hsa-miR-4739 1 1 0
chr12:57941600|57941779 hsa-miR-4741 1 0 0
chr12:57941600|57941779 hsa-miR-4748 1 0 0
chr12:57941600|57941779 hsa-miR-4767 1 0 0
chr12:57941600|57941779 hsa-miR-5047 0 1 0
chr12:57941600|57941779 hsa-miR-5787 1 0 0
chr12:57941600|57941779 hsa-miR-6078 0 1 0
chr12:57941600|57941779 hsa-miR-6081 0 1 0
chr12:57941600|57941779 hsa-miR-6090 1 0 0
chr12:57941600|57941779 hsa-miR-6127 1 0 0
chr12:57941600|57941779 hsa-miR-8072 1 1 0
chr12:57941600|57941779 hsa-miR-9901 1 0 0
chr12:57941600|57941779 hsa-miR-323a-5p 1 0 0
chr12:57941600|57941779 hsa-miR-4726-3p 1 0 0
chr12:57941600|57941779 hsa-miR-671-5p 1 0 0
chr12:57941600|57941779 hsa-miR-766-5p 1 1 0
chr12:57941600|57941779 hsa-miR-6807-5p 0 1 0
chr12:57941600|57941779 hsa-miR-3192-5p 1 0 0
chr12:57941600|57941779 hsa-miR-4695-5p 1 1 0
chr12:57941600|57941779 hsa-miR-6746-5p 1 0 0
chr12:57941600|57941779 hsa-miR-3622b-5p 0 1 0
chr12:57941600|57941779 hsa-miR-6806-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6798-5p 1 0 0
chr12:57941600|57941779 hsa-miR-1224-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6821-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6786-5p 1 0 0
chr12:57941600|57941779 hsa-miR-4640-5p 1 1 0
chr12:57941600|57941779 hsa-miR-1908-5p 0 1 0
chr12:57941600|57941779 hsa-miR-1228-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6771-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6749-5p 1 0 0
chr12:57941600|57941779 hsa-miR-149-3p 1 1 0
chr12:57941600|57941779 hsa-miR-3184-3p 0 1 0
chr12:57941600|57941779 hsa-miR-10400-5p 1 0 0
chr12:57941600|57941779 hsa-miR-1233-5p 1 0 0
chr12:57941600|57941779 hsa-miR-4763-3p 1 1 0
chr12:57941600|57941779 hsa-miR-6778-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6787-5p 1 1 0
chr12:57941600|57941779 hsa-miR-6775-5p 1 0 0
chr12:57941600|57941779 hsa-miR-1343-5p 0 1 0
chr12:57941600|57941779 hsa-miR-6726-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6754-5p 1 0 0
chr12:57941600|57941779 hsa-miR-7107-5p 1 0 0
chr12:57941600|57941779 hsa-miR-10401-5p 1 0 0
chr12:57941600|57941779 hsa-miR-1249-5p 1 1 0
chr12:57941600|57941779 hsa-miR-6722-3p 0 1 0
chr12:57941600|57941779 hsa-miR-6774-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6779-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6797-5p 1 1 0
chr12:57941600|57941779 hsa-miR-6875-5p 1 0 0
chr12:57941600|57941779 hsa-miR-7111-5p 1 0 0
chr12:57941600|57941779 hsa-miR-4728-5p 1 1 0
chr12:57941600|57941779 hsa-miR-5189-5p 1 0 0
chr12:57941600|57941779 hsa-miR-10396a-5p 0 1 0
chr12:57941600|57941779 hsa-miR-10396b-5p 1 1 0
chr12:57941600|57941779 hsa-miR-1909-3p 0 1 0
chr12:57941600|57941779 hsa-miR-328-5p 1 1 0
chr12:57941600|57941779 hsa-miR-4649-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6729-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6848-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6858-5p 1 0 0
chr12:57941600|57941779 hsa-miR-3187-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6885-5p 1 1 0
chr12:57941600|57941779 hsa-miR-1199-5p 0 1 0
chr12:57941600|57941779 hsa-miR-1914-3p 1 0 0
chr12:57941600|57941779 hsa-miR-4747-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6750-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6785-5p 0 1 0
chr12:57941600|57941779 hsa-miR-6724-5p 0 1 0
chr12:57941600|57941779 hsa-miR-10400-3p 1 0 0
chr12:57941600|57941779 hsa-miR-4756-5p 1 0 0
chr12:57941600|57941779 hsa-miR-6838-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:57941600|57941779
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence LARDVLLLQLLPCRGAPPALVRSSRHASRRPRRCFLLAQAARARLGKVTSLPPTRPPRPS
Nucleotide Sequence CTGGCAAGAGACGTGTTGCTGCTGCAGCTGCTCCCCTGCCGCGGGGCCCCGCCGGCGCTCGTCCGGAGCTCCCGCCATGCCTCCCGCAGACCTCGCCGCTGCTTCCTCCTGGCTCAGGCGGCCAGAGCGAGACTGGGAAAGGTAACCTCCCTCCCGCCAACGCGACCGCCCAGGCCCTCC
CircID chr12:57941600|57941779
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MPRGPAGARPELPPCLPQTSPLLPPGSGGQSETGKGNLPPANATAQAL
Nucleotide Sequence CTGCCGCGGGGCCCCGCCGGCGCTCGTCCGGAGCTCCCGCCATGCCTCCCGCAGACCTCGCCGCTGCTTCCTCCTGGCTCAGGCGGCCAGAGCGAGACTGGGAAAGGTAACCTCCCTCCCGCCAACGCGACCGCCCAGGCCCTC
CircID chr12:57941600|57941779
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MSQEEAAARSAGGMAGAPDERRRGPAAGEQLQQQHVSCQ
Nucleotide Sequence CTGAGCCAGGAGGAAGCAGCGGCGAGGTCTGCGGGAGGCATGGCGGGAGCTCCGGACGAGCGCCGGCGGGGCCCCGCGGCAGGGGAGCAGCTGCAGCAGCAACACGTCTCTTGCCAG
CircID chr12:57941600|57941779
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MREAWRELRTSAGGAPRQGSSCSSNTSLA
Nucleotide Sequence CTGCGGGAGGCATGGCGGGAGCTCCGGACGAGCGCCGGCGGGGCCCCGCGGCAGGGGAGCAGCTGCAGCAGCAACACGTCTCTTGCC
CircID chr12:57941600|57941779
ORF Type ORF5
Protein Length 53
Nucleotide Length 159
Protein Sequence MAGGRLPFPVSLWPPEPGGSSGEVCGRHGGSSGRAPAGPRGRGAAAAATRLLP
Nucleotide Sequence TTGGCGGGAGGGAGGTTACCTTTCCCAGTCTCGCTCTGGCCGCCTGAGCCAGGAGGAAGCAGCGGCGAGGTCTGCGGGAGGCATGGCGGGAGCTCCGGACGAGCGCCGGCGGGGCCCCGCGGCAGGGGAGCAGCTGCAGCAGCAACACGTCTCTTGCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab