CircNet

General Information

circRNA Basic Information

CircID	chr12:5827769\|5854141
Strand	-
CircType	exon
Host Gene	ENSG00000047617.14;
Algorism	CIRI2;find_circ;DCC;
Sequence	AATAAAAGCCAGGGATCCATCTTTGTCCGGATACACGCCCCGTGGCAGGTGCTGGCCAGAGAGGCAGAATTCTTGAAGATCAAAGTTCCTACCAAGAAAATGTACGAGATCAAAGCAGGAGGCAGCATTGCAAAGAAGTTCAGCGCGGCTCTGCAGAAGCTGAGCTCGCACCTGCAGCCCCGAGTTCCAGAACACAGCAACAACAAGATGAAAAACCTCTCCTACCCATTCTCCAGGGAGAAGATGTACCTGTACAACATCCAGGAAAAGGACACCTTCTTTGATAATGCCACCCGCAGCCGCATTGTGCACGAGATCCTGAAGCGCACAGCCTGCTCCCGAGCCAACAACACGATGG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr12:5827769\|5854141	hsa-let-7c-3p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr12:5827769\|5854141
ORF Type	ORF1
Protein Length	86
Nucleotide Length	258
Protein Sequence	MYEIKAGGSIAKKFSAALQKLSSHLQPRVPEHSNNKMKNLSYPFSREKMYLYNIQEKDTFFDNATRSRIVHEILKRTACSRANNTM
Nucleotide Sequence	ATGTACGAGATCAAAGCAGGAGGCAGCATTGCAAAGAAGTTCAGCGCGGCTCTGCAGAAGCTGAGCTCGCACCTGCAGCCCCGAGTTCCAGAACACAGCAACAACAAGATGAAAAACCTCTCCTACCCATTCTCCAGGGAGAAGATGTACCTGTACAACATCCAGGAAAAGGACACCTTCTTTGATAATGCCACCCGCAGCCGCATTGTGCACGAGATCCTGAAGCGCACAGCCTGCTCCCGAGCCAACAACACGATG

CircID	chr12:5827769\|5854141
ORF Type	ORF2
Protein Length	104
Nucleotide Length	312
Protein Sequence	VHNAAAGGIIKEGVLFLDVVQVHLLPGEWVGEVFHLVVAVFWNSGLQVRAQLLQSRAELLCNAASCFDLVHFLGRNFDLQEFCLSGQHLPRGVYPDKDGSLAFI
Nucleotide Sequence	GTGCACAATGCGGCTGCGGGTGGCATTATCAAAGAAGGTGTCCTTTTCCTGGATGTTGTACAGGTACATCTTCTCCCTGGAGAATGGGTAGGAGAGGTTTTTCATCTTGTTGTTGCTGTGTTCTGGAACTCGGGGCTGCAGGTGCGAGCTCAGCTTCTGCAGAGCCGCGCTGAACTTCTTTGCAATGCTGCCTCCTGCTTTGATCTCGTACATTTTCTTGGTAGGAACTTTGATCTTCAAGAATTCTGCCTCTCTGGCCAGCACCTGCCACGGGGCGTGTATCCGGACAAAGATGGATCCCTGGCTTTTATT

CircID	chr12:5827769\|5854141
ORF Type	ORF3
Protein Length	42
Nucleotide Length	126
Protein Sequence	MLPPALISYIFLVGTLIFKNSASLASTCHGACIRTKMDPWLL
Nucleotide Sequence	ATGCTGCCTCCTGCTTTGATCTCGTACATTTTCTTGGTAGGAACTTTGATCTTCAAGAATTCTGCCTCTCTGGCCAGCACCTGCCACGGGGCGTGTATCCGGACAAAGATGGATCCCTGGCTTTTA

CircID	chr12:5827769\|5854141
ORF Type	ORF4
Protein Length	81
Nucleotide Length	243
Protein Sequence	VAGAGQRGRILEDQSSYQENVRDQSRRQHCKEVQRGSAEAELAPAAPSSRTQQQQDEKPLLPILQGEDVPVQHPGKGHLL*
Nucleotide Sequence	GTGGCAGGTGCTGGCCAGAGAGGCAGAATTCTTGAAGATCAAAGTTCCTACCAAGAAAATGTACGAGATCAAAGCAGGAGGCAGCATTGCAAAGAAGTTCAGCGCGGCTCTGCAGAAGCTGAGCTCGCACCTGCAGCCCCGAGTTCCAGAACACAGCAACAACAAGATGAAAAACCTCTCCTACCCATTCTCCAGGGAGAAGATGTACCTGTACAACATCCAGGAAAAGGACACCTTCTTTGA

CircID	chr12:5827769\|5854141
ORF Type	ORF5
Protein Length	30
Nucleotide Length	90
Protein Sequence	MGRRGFSSCCCCVLELGAAGASSASAEPR*
Nucleotide Sequence	ATGGGTAGGAGAGGTTTTTCATCTTGTTGTTGCTGTGTTCTGGAACTCGGGGCTGCAGGTGCGAGCTCAGCTTCTGCAGAGCCGCGCTGA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr12:5827769\|5854141	ELAVL1	0	1	0
chr12:5827769\|5854141	FUS	1	2	0
chr12:5827769\|5854141	ADAR	0	1	0
chr12:5827769\|5854141	CSTF2T	0	1	0
chr12:5827769\|5854141	CSTF2	0	1	0
chr12:5827769\|5854141	NOP58	0	0	1
chr12:5827769\|5854141	FBL	1	0	1
chr12:5827769\|5854141	RBFOX2	0	2	0

CircRNA Information