CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6235238|6235565
Strand +
CircType exon
Host Gene ENSG00000010278.10;
Algorism CIRI2;
Sequence CTTCACGGTGAAGGTTTCGAGTACGTCCTTCTTGGGGCAGATGTCTGAGATAAACTGTTCCACGCCCCCAGCCAAACCACAGCAGTTCAACTACAGCGAGAAGGCAGGGATGGGGATGAGAGAAACAAATTGTAAGAAGACGATTAGAATGTTTGCACTGGTCTGGTGCAGTCAGCACCCTGTGTGCAGACACAATCCGGAGAAAGCGCAGGAGGGTGTCTTTGCCAAGGCGACATACCGCATAGTGGATGGCTTTCAGCGTTTCCCGCTGGGGCTCATCCTTGGTTTTCAGCTTGTTGTAGGTGTCCTTGTAAAACTCCTGGACTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6235238|6235565 hsa-miR-19a-5p 0 0 1
chr12:6235238|6235565 hsa-miR-19a-3p 0 0 1
chr12:6235238|6235565 hsa-miR-148a-5p 0 0 1
chr12:6235238|6235565 hsa-miR-148a-3p 0 0 1
chr12:6235238|6235565 hsa-miR-182-5p 0 0 1
chr12:6235238|6235565 hsa-miR-182-3p 0 0 1
chr12:6235238|6235565 hsa-miR-130a-5p 0 0 1
chr12:6235238|6235565 hsa-miR-130a-3p 0 0 1
chr12:6235238|6235565 hsa-miR-152-5p 0 0 1
chr12:6235238|6235565 hsa-miR-152-3p 0 0 1
chr12:6235238|6235565 hsa-miR-301a-5p 0 0 1
chr12:6235238|6235565 hsa-miR-301a-3p 0 0 1
chr12:6235238|6235565 hsa-miR-130b-5p 0 0 1
chr12:6235238|6235565 hsa-miR-130b-3p 0 0 1
chr12:6235238|6235565 hsa-miR-148b-5p 0 0 1
chr12:6235238|6235565 hsa-miR-148b-3p 0 0 1
chr12:6235238|6235565 hsa-miR-346 0 0 1
chr12:6235238|6235565 hsa-miR-412-5p 0 0 1
chr12:6235238|6235565 hsa-miR-412-3p 0 0 1
chr12:6235238|6235565 hsa-miR-570-5p 0 0 1
chr12:6235238|6235565 hsa-miR-570-3p 0 0 1
chr12:6235238|6235565 hsa-miR-592 0 0 1
chr12:6235238|6235565 hsa-miR-599 0 0 1
chr12:6235238|6235565 hsa-miR-600 0 0 1
chr12:6235238|6235565 hsa-miR-624-5p 0 0 1
chr12:6235238|6235565 hsa-miR-624-3p 0 0 1
chr12:6235238|6235565 hsa-miR-632 0 0 1
chr12:6235238|6235565 hsa-miR-637 1 0 1
chr12:6235238|6235565 hsa-miR-647 0 0 1
chr12:6235238|6235565 hsa-miR-454-5p 0 0 1
chr12:6235238|6235565 hsa-miR-454-3p 0 0 1
chr12:6235238|6235565 hsa-miR-665 0 0 1
chr12:6235238|6235565 hsa-miR-543 0 0 1
chr12:6235238|6235565 hsa-miR-301b-5p 0 0 1
chr12:6235238|6235565 hsa-miR-301b-3p 0 0 1
chr12:6235238|6235565 hsa-miR-1255a 0 0 1
chr12:6235238|6235565 hsa-miR-1197 0 0 1
chr12:6235238|6235565 hsa-miR-1324 0 0 1
chr12:6235238|6235565 hsa-miR-1825 0 0 1
chr12:6235238|6235565 hsa-miR-1225-3p 0 0 1
chr12:6235238|6235565 hsa-miR-767-5p 0 0 1
chr12:6235238|6235565 hsa-miR-628-5p 0 1 1
chr12:6235238|6235565 hsa-miR-576-5p 0 0 1
chr12:6235238|6235565 hsa-miR-324-3p 0 0 1
chr12:6235238|6235565 hsa-miR-1233 0 0 1
chr12:6235238|6235565 hsa-miR-1255b 0 0 1
chr12:6235238|6235565 hsa-miR-220c 0 0 1
chr12:6235238|6235565 hsa-miR-1268 0 0 1
chr12:6235238|6235565 hsa-miR-19b 0 0 1
chr12:6235238|6235565 hsa-miR-720 0 0 1
chr12:6235238|6235565 hsa-miR-639 1 0 0
chr12:6235238|6235565 hsa-miR-762 1 0 0
chr12:6235238|6235565 hsa-miR-1539 0 1 0
chr12:6235238|6235565 hsa-miR-3143 0 1 0
chr12:6235238|6235565 hsa-miR-4505 0 1 0
chr12:6235238|6235565 hsa-miR-5787 1 1 0
chr12:6235238|6235565 hsa-miR-8080 0 1 0
chr12:6235238|6235565 hsa-miR-12115 1 0 0
chr12:6235238|6235565 hsa-miR-4731-5p 0 1 0
chr12:6235238|6235565 hsa-miR-6747-3p 0 1 0
chr12:6235238|6235565 hsa-miR-212-5p 0 1 0
chr12:6235238|6235565 hsa-miR-191-3p 0 1 0
chr12:6235238|6235565 hsa-miR-7110-3p 0 1 0
chr12:6235238|6235565 hsa-miR-7845-5p 1 0 0
chr12:6235238|6235565 hsa-miR-1915-5p 1 0 0
chr12:6235238|6235565 hsa-miR-4711-5p 1 1 0
chr12:6235238|6235565 hsa-miR-1292-5p 1 0 0
chr12:6235238|6235565 hsa-miR-3130-3p 0 1 0
chr12:6235238|6235565 hsa-miR-5010-3p 0 1 0
chr12:6235238|6235565 hsa-miR-6809-3p 0 1 0
chr12:6235238|6235565 hsa-miR-6870-3p 1 1 0
chr12:6235238|6235565 hsa-miR-1289 0 1 0
chr12:6235238|6235565 hsa-miR-6811-3p 1 0 0
chr12:6235238|6235565 hsa-miR-660-3p 1 0 0
chr12:6235238|6235565 hsa-miR-6814-5p 0 1 0
chr12:6235238|6235565 hsa-miR-6865-3p 0 1 0
chr12:6235238|6235565 hsa-miR-4529-3p 0 1 0
chr12:6235238|6235565 hsa-miR-6883-3p 0 1 0
chr12:6235238|6235565 hsa-miR-6729-3p 0 1 0
chr12:6235238|6235565 hsa-miR-5699-5p 0 1 0
chr12:6235238|6235565 hsa-miR-6505-5p 1 0 0
chr12:6235238|6235565 hsa-miR-6752-5p 1 1 0
chr12:6235238|6235565 hsa-miR-6803-5p 1 0 0
chr12:6235238|6235565 hsa-miR-4649-5p 1 0 0
chr12:6235238|6235565 hsa-miR-6783-3p 1 0 0
chr12:6235238|6235565 hsa-miR-4768-5p 0 1 0
chr12:6235238|6235565 hsa-miR-6833-3p 0 1 0
chr12:6235238|6235565 hsa-miR-506-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:6235238|6235565
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MFHAPSQTTAVQLQREGRDGDERNKL
Nucleotide Sequence CTGTTCCACGCCCCCAGCCAAACCACAGCAGTTCAACTACAGCGAGAAGGCAGGGATGGGGATGAGAGAAACAAATTGTAA
CircID chr12:6235238|6235565
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MVQSAPCVQTQSGESAGGCLCQGDIPHSGWLSAFPAGAHPWFSACCRCPCKTPGL
Nucleotide Sequence CTGGTGCAGTCAGCACCCTGTGTGCAGACACAATCCGGAGAAAGCGCAGGAGGGTGTCTTTGCCAAGGCGACATACCGCATAGTGGATGGCTTTCAGCGTTTCCCGCTGGGGCTCATCCTTGGTTTTCAGCTTGTTGTAGGTGTCCTTGTAAAACTCCTGGACTT
CircID chr12:6235238|6235565
ORF Type ORF3
Protein Length 99
Nucleotide Length 297
Protein Sequence MGQMSEINCSTPPAKPQQFNYSEKAGMGMRETNCKKTIRMFALVWCSQHPVCRHNPEKAQEGVFAKATYRIVDGFQRFPLGLILGFQLVVGVLVKLLDF
Nucleotide Sequence TTGGGGCAGATGTCTGAGATAAACTGTTCCACGCCCCCAGCCAAACCACAGCAGTTCAACTACAGCGAGAAGGCAGGGATGGGGATGAGAGAAACAAATTGTAAGAAGACGATTAGAATGTTTGCACTGGTCTGGTGCAGTCAGCACCCTGTGTGCAGACACAATCCGGAGAAAGCGCAGGAGGGTGTCTTTGCCAAGGCGACATACCGCATAGTGGATGGCTTTCAGCGTTTCCCGCTGGGGCTCATCCTTGGTTTTCAGCTTGTTGTAGGTGTCCTTGTAAAACTCCTGGACTTC
CircID chr12:6235238|6235565
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MHWSGAVSTLCADTIRRKRRRVSLPRRHTA
Nucleotide Sequence TTGCACTGGTCTGGTGCAGTCAGCACCCTGTGTGCAGACACAATCCGGAGAAAGCGCAGGAGGGTGTCTTTGCCAAGGCGACATACCGCATAG
CircID chr12:6235238|6235565
ORF Type ORF5
Protein Length 97
Nucleotide Length 291
Protein Sequence MKTKDEPQRETLKAIHYAVCRLGKDTLLRFLRIVSAHRVLTAPDQCKHSNRLLTICFSHPHPCLLAVVELLWFGWGRGTVYLRHLPQEGRTRNLHRE
Nucleotide Sequence CTGAAAACCAAGGATGAGCCCCAGCGGGAAACGCTGAAAGCCATCCACTATGCGGTATGTCGCCTTGGCAAAGACACCCTCCTGCGCTTTCTCCGGATTGTGTCTGCACACAGGGTGCTGACTGCACCAGACCAGTGCAAACATTCTAATCGTCTTCTTACAATTTGTTTCTCTCATCCCCATCCCTGCCTTCTCGCTGTAGTTGAACTGCTGTGGTTTGGCTGGGGGCGTGGAACAGTTTATCTCAGACATCTGCCCCAAGAAGGACGTACTCGAAACCTTCACCGTGAA
CircID chr12:6235238|6235565
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MHQTSANILIVFLQFVSLIPIPAFSL
Nucleotide Sequence CTGCACCAGACCAGTGCAAACATTCTAATCGTCTTCTTACAATTTGTTTCTCTCATCCCCATCCCTGCCTTCTCGCTGTAG
CircID chr12:6235238|6235565
ORF Type ORF7
Protein Length 30
Nucleotide Length 90
Protein Sequence MNCCGLAGGVEQFISDICPKKDVLETFTVK
Nucleotide Sequence TTGAACTGCTGTGGTTTGGCTGGGGGCGTGGAACAGTTTATCTCAGACATCTGCCCCAAGAAGGACGTACTCGAAACCTTCACCGTGAAG
CircID chr12:6235238|6235565
ORF Type ORF8
Protein Length 30
Nucleotide Length 93
Protein Sequence MSPWQRHPPALSPDCVCTQGADCTRPVQTF
Nucleotide Sequence ATGTCGCCTTGGCAAAGACACCCTCCTGCGCTTTCTCCGGATTGTGTCTGCACACAGGGTGCTGACTGCACCAGACCAGTGCAAACATTCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab