CircRNA Information

General Information
circRNA Basic Information
CircID chr12:62646207|62646441
Strand +
CircType exon
Host Gene ENSG00000111110.10;
Algorism CIRI2;
Sequence CCTGAGCTGCCGTCTTTGGGATCCTTCCTGTGTCCCCACCGTCTTTCATTTATTTGCTTTCCTGGGCCTCTATCTGGGCCCTACCTTGAGCTTCTCCAGTTTTATTCAAGCCACCAGAGTAAGAATTTGGGTGTAGATGTCACAACTACCTTCTACTCAATTCACCAATTCATTTACTGCTATGGCACGTCTCAGGAATAACTCTAGAAACCTCTAAATCGAAATATTATAAAAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:62646207|62646441 hsa-miR-374a-5p 0 0 1
chr12:62646207|62646441 hsa-miR-374a-3p 0 0 1
chr12:62646207|62646441 hsa-miR-196b-5p 0 0 1
chr12:62646207|62646441 hsa-miR-196b-3p 0 0 1
chr12:62646207|62646441 hsa-miR-489-5p 0 0 1
chr12:62646207|62646441 hsa-miR-489-3p 0 0 1
chr12:62646207|62646441 hsa-miR-758-5p 0 0 1
chr12:62646207|62646441 hsa-miR-758-3p 0 0 1
chr12:62646207|62646441 hsa-miR-1296-5p 0 0 1
chr12:62646207|62646441 hsa-miR-1296-3p 0 0 1
chr12:62646207|62646441 hsa-miR-877-5p 0 0 1
chr12:62646207|62646441 hsa-miR-877-3p 0 0 1
chr12:62646207|62646441 hsa-miR-374b-5p 0 0 1
chr12:62646207|62646441 hsa-miR-374b-3p 0 0 1
chr12:62646207|62646441 hsa-miR-1200 0 0 1
chr12:62646207|62646441 hsa-miR-548e-5p 0 0 1
chr12:62646207|62646441 hsa-miR-548e-3p 0 0 1
chr12:62646207|62646441 hsa-miR-1303 0 0 1
chr12:62646207|62646441 hsa-miR-139-3p 0 0 1
chr12:62646207|62646441 hsa-miR-491-5p 0 0 1
chr12:62646207|62646441 hsa-miR-518d-5p 0 0 1
chr12:62646207|62646441 hsa-miR-519b-5p 0 0 1
chr12:62646207|62646441 hsa-miR-519c-5p 0 0 1
chr12:62646207|62646441 hsa-miR-520c-5p 0 0 1
chr12:62646207|62646441 hsa-miR-548a-3p 0 0 1
chr12:62646207|62646441 hsa-miR-542-3p 0 0 1
chr12:62646207|62646441 hsa-miR-369-3p 0 0 1
chr12:62646207|62646441 hsa-miR-548f 0 0 1
chr12:62646207|62646441 hsa-miR-219-2-3p 0 0 1
chr12:62646207|62646441 hsa-miR-526a 0 0 1
chr12:62646207|62646441 hsa-miR-196a 0 0 1
chr12:62646207|62646441 hsa-miR-637 1 0 0
chr12:62646207|62646441 hsa-miR-638 1 0 0
chr12:62646207|62646441 hsa-miR-1262 1 1 0
chr12:62646207|62646441 hsa-miR-3153 1 1 0
chr12:62646207|62646441 hsa-miR-3197 1 0 0
chr12:62646207|62646441 hsa-miR-3918 0 1 0
chr12:62646207|62646441 hsa-miR-4422 1 0 0
chr12:62646207|62646441 hsa-miR-4456 0 1 0
chr12:62646207|62646441 hsa-miR-4462 1 0 0
chr12:62646207|62646441 hsa-miR-4476 1 1 0
chr12:62646207|62646441 hsa-miR-5703 0 1 0
chr12:62646207|62646441 hsa-miR-6075 1 0 0
chr12:62646207|62646441 hsa-miR-6088 1 0 0
chr12:62646207|62646441 hsa-miR-6125 1 0 0
chr12:62646207|62646441 hsa-miR-6863 0 1 0
chr12:62646207|62646441 hsa-miR-8089 1 0 0
chr12:62646207|62646441 hsa-miR-12127 0 1 0
chr12:62646207|62646441 hsa-miR-504-3p 1 0 0
chr12:62646207|62646441 hsa-miR-6765-5p 1 0 0
chr12:62646207|62646441 hsa-miR-8071 1 0 0
chr12:62646207|62646441 hsa-miR-6089 1 0 0
chr12:62646207|62646441 hsa-miR-3192-5p 1 0 0
chr12:62646207|62646441 hsa-miR-8069 1 0 0
chr12:62646207|62646441 hsa-miR-6768-5p 0 1 0
chr12:62646207|62646441 hsa-miR-3190-3p 1 0 0
chr12:62646207|62646441 hsa-miR-6810-5p 1 1 0
chr12:62646207|62646441 hsa-miR-7855-5p 1 0 0
chr12:62646207|62646441 hsa-miR-5008-5p 1 0 0
chr12:62646207|62646441 hsa-miR-6786-5p 1 1 0
chr12:62646207|62646441 hsa-miR-4738-3p 0 1 0
chr12:62646207|62646441 hsa-miR-1229-5p 1 0 0
chr12:62646207|62646441 hsa-miR-193b-5p 1 0 0
chr12:62646207|62646441 hsa-miR-4640-5p 1 0 0
chr12:62646207|62646441 hsa-miR-488-5p 0 1 0
chr12:62646207|62646441 hsa-miR-4732-5p 1 0 0
chr12:62646207|62646441 hsa-miR-6866-5p 0 1 0
chr12:62646207|62646441 hsa-miR-4661-3p 0 1 0
chr12:62646207|62646441 hsa-miR-483-5p 1 0 0
chr12:62646207|62646441 hsa-miR-6756-5p 1 0 0
chr12:62646207|62646441 hsa-miR-6769a-5p 1 0 0
chr12:62646207|62646441 hsa-miR-328-5p 1 0 0
chr12:62646207|62646441 hsa-miR-4632-5p 1 0 0
chr12:62646207|62646441 hsa-miR-6795-5p 1 0 0
chr12:62646207|62646441 hsa-miR-6887-5p 1 0 0
chr12:62646207|62646441 hsa-miR-4758-5p 1 1 0
chr12:62646207|62646441 hsa-miR-6773-5p 1 0 0
chr12:62646207|62646441 hsa-miR-6876-5p 1 1 0
chr12:62646207|62646441 hsa-miR-4667-5p 0 1 0
chr12:62646207|62646441 hsa-miR-3928-5p 0 1 0
chr12:62646207|62646441 hsa-miR-10527-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:62646207|62646441
ORF Type ORF1
Protein Length 64
Nucleotide Length 195
Protein Sequence MPSLGSFLCPHRLSFICFPGPLSGPYLELLQFYSSHQSKNLGVDVTTTFYSIHQFIYCYGTSQE
Nucleotide Sequence CTGCCGTCTTTGGGATCCTTCCTGTGTCCCCACCGTCTTTCATTTATTTGCTTTCCTGGGCCTCTATCTGGGCCCTACCTTGAGCTTCTCCAGTTTTATTCAAGCCACCAGAGTAAGAATTTGGGTGTAGATGTCACAACTACCTTCTACTCAATTCACCAATTCATTTACTGCTATGGCACGTCTCAGGAATAA
CircID chr12:62646207|62646441
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence LSCRLWDPSCVPTVFHLFAFLGLYLGPTLSFSSFIQATRVRIWV
Nucleotide Sequence CTGAGCTGCCGTCTTTGGGATCCTTCCTGTGTCCCCACCGTCTTTCATTTATTTGCTTTCCTGGGCCTCTATCTGGGCCCTACCTTGAGCTTCTCCAGTTTTATTCAAGCCACCAGAGTAAGAATTTGGGTGTAG
CircID chr12:62646207|62646441
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MSQLPSTQFTNSFTAMARLRNNSRNL
Nucleotide Sequence ATGTCACAACTACCTTCTACTCAATTCACCAATTCATTTACTGCTATGGCACGTCTCAGGAATAACTCTAGAAACCTCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab