CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6347237|6347420
Strand +
CircType exon
Host Gene ENSG00000111319.11;
Algorism CIRI2;
Sequence AGATGTCTGCTCCTCCTCTTGAACTTGGGTGGGAAACCCCACCCAAAAGCCCCCTTTGTTACTTAGGCAATTCCCCTTCCCTGACTCCCGAGGGCTAGGGCTAGAGCAGACCCGGGTAAGTAAAGGCAGACCCAGGGCTCCTCTAGCCTCATACCCGTGCCCTCACAGAGCCATGCCCCGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6347237|6347420 hsa-miR-335-5p 0 0 1
chr12:6347237|6347420 hsa-miR-335-3p 0 0 1
chr12:6347237|6347420 hsa-miR-346 0 0 1
chr12:6347237|6347420 hsa-miR-495-5p 0 0 1
chr12:6347237|6347420 hsa-miR-495-3p 0 0 1
chr12:6347237|6347420 hsa-miR-564 0 0 1
chr12:6347237|6347420 hsa-miR-802 0 0 1
chr12:6347237|6347420 hsa-miR-765 0 0 1
chr12:6347237|6347420 hsa-miR-877-5p 0 0 1
chr12:6347237|6347420 hsa-miR-877-3p 0 0 1
chr12:6347237|6347420 hsa-miR-760 0 0 1
chr12:6347237|6347420 hsa-miR-1293 0 0 1
chr12:6347237|6347420 hsa-miR-1294 0 0 1
chr12:6347237|6347420 hsa-miR-1251-5p 0 0 1
chr12:6347237|6347420 hsa-miR-1251-3p 0 0 1
chr12:6347237|6347420 hsa-miR-1262 0 0 1
chr12:6347237|6347420 hsa-miR-485-5p 0 0 1
chr12:6347237|6347420 hsa-miR-193a-5p 0 0 1
chr12:6347237|6347420 hsa-miR-941 0 0 1
chr12:6347237|6347420 hsa-miR-1224-3p 0 0 1
chr12:6347237|6347420 hsa-miR-767-3p 0 0 1
chr12:6347237|6347420 hsa-miR-188-3p 0 0 1
chr12:6347237|6347420 hsa-miR-1260 0 0 1
chr12:6347237|6347420 hsa-miR-1280 0 0 1
chr12:6347237|6347420 hsa-miR-1233 0 0 1
chr12:6347237|6347420 hsa-miR-129-3p 0 0 1
chr12:6347237|6347420 hsa-miR-638 1 0 0
chr12:6347237|6347420 hsa-miR-1268a 1 0 0
chr12:6347237|6347420 hsa-miR-3154 1 0 0
chr12:6347237|6347420 hsa-miR-4270 1 0 0
chr12:6347237|6347420 hsa-miR-4292 0 1 0
chr12:6347237|6347420 hsa-miR-3685 0 1 0
chr12:6347237|6347420 hsa-miR-1268b 1 0 0
chr12:6347237|6347420 hsa-miR-4508 1 0 0
chr12:6347237|6347420 hsa-miR-4739 1 0 0
chr12:6347237|6347420 hsa-miR-5090 1 1 0
chr12:6347237|6347420 hsa-miR-5787 1 0 0
chr12:6347237|6347420 hsa-miR-8057 0 1 0
chr12:6347237|6347420 hsa-miR-9898 0 1 0
chr12:6347237|6347420 hsa-miR-12118 0 1 0
chr12:6347237|6347420 hsa-miR-12128 0 1 0
chr12:6347237|6347420 hsa-miR-211-3p 1 0 0
chr12:6347237|6347420 hsa-miR-92a-2-5p 0 1 0
chr12:6347237|6347420 hsa-miR-218-2-3p 0 1 0
chr12:6347237|6347420 hsa-miR-4709-3p 1 0 0
chr12:6347237|6347420 hsa-miR-6727-5p 1 1 0
chr12:6347237|6347420 hsa-miR-6805-5p 0 1 0
chr12:6347237|6347420 hsa-miR-6798-5p 1 0 0
chr12:6347237|6347420 hsa-miR-6782-5p 1 0 0
chr12:6347237|6347420 hsa-miR-1226-5p 0 1 0
chr12:6347237|6347420 hsa-miR-6784-5p 1 0 0
chr12:6347237|6347420 hsa-miR-5001-3p 0 1 0
chr12:6347237|6347420 hsa-miR-3202 0 1 0
chr12:6347237|6347420 hsa-miR-149-3p 1 0 0
chr12:6347237|6347420 hsa-miR-3616-3p 0 1 0
chr12:6347237|6347420 hsa-miR-937-5p 1 0 0
chr12:6347237|6347420 hsa-miR-3162-5p 1 0 0
chr12:6347237|6347420 hsa-miR-1289 0 1 0
chr12:6347237|6347420 hsa-miR-3140-3p 0 1 0
chr12:6347237|6347420 hsa-miR-520g-5p 0 1 0
chr12:6347237|6347420 hsa-miR-1207-5p 1 0 0
chr12:6347237|6347420 hsa-miR-4763-3p 1 0 0
chr12:6347237|6347420 hsa-miR-6775-5p 1 1 0
chr12:6347237|6347420 hsa-miR-1343-5p 1 0 0
chr12:6347237|6347420 hsa-miR-6756-5p 1 0 0
chr12:6347237|6347420 hsa-miR-6774-5p 1 0 0
chr12:6347237|6347420 hsa-miR-6808-5p 1 0 0
chr12:6347237|6347420 hsa-miR-4728-5p 1 0 0
chr12:6347237|6347420 hsa-miR-5196-5p 1 1 0
chr12:6347237|6347420 hsa-miR-6862-5p 0 1 0
chr12:6347237|6347420 hsa-miR-10396b-5p 1 0 0
chr12:6347237|6347420 hsa-miR-10526-3p 0 1 0
chr12:6347237|6347420 hsa-miR-328-5p 1 0 0
chr12:6347237|6347420 hsa-miR-6846-5p 0 1 0
chr12:6347237|6347420 hsa-miR-6848-5p 0 1 0
chr12:6347237|6347420 hsa-miR-6858-5p 1 0 0
chr12:6347237|6347420 hsa-miR-939-5p 1 0 0
chr12:6347237|6347420 hsa-miR-4646-5p 1 0 0
chr12:6347237|6347420 hsa-miR-4747-5p 0 1 0
chr12:6347237|6347420 hsa-miR-6891-5p 1 0 0
chr12:6347237|6347420 hsa-miR-6791-5p 0 1 0
chr12:6347237|6347420 hsa-miR-6753-3p 0 1 0
chr12:6347237|6347420 hsa-miR-6503-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:6347237|6347420
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MLLRQFPFPDSRGLGLEQTRVSKGRPRAPLASYPCPHRAMPRH
Nucleotide Sequence TTGTTACTTAGGCAATTCCCCTTCCCTGACTCCCGAGGGCTAGGGCTAGAGCAGACCCGGGTAAGTAAAGGCAGACCCAGGGCTCCTCTAGCCTCATACCCGTGCCCTCACAGAGCCATGCCCCGGCAC
CircID chr12:6347237|6347420
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MSAPPLELGWETPPKSPLCYLGNSPSLTPEG
Nucleotide Sequence ATGTCTGCTCCTCCTCTTGAACTTGGGTGGGAAACCCCACCCAAAAGCCCCCTTTGTTACTTAGGCAATTCCCCTTCCCTGACTCCCGAGGGCTAG
CircID chr12:6347237|6347420
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MGLPLLTRVCSSPSPRESGKGNCLSNKGGFWVGFPTQVQEEEQTS
Nucleotide Sequence CTGGGTCTGCCTTTACTTACCCGGGTCTGCTCTAGCCCTAGCCCTCGGGAGTCAGGGAAGGGGAATTGCCTAAGTAACAAAGGGGGCTTTTGGGTGGGGTTTCCCACCCAAGTTCAAGAGGAGGAGCAGACATCT
CircID chr12:6347237|6347420
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MRLEEPWVCLYLPGSALALALGSQGRGIA
Nucleotide Sequence ATGAGGCTAGAGGAGCCCTGGGTCTGCCTTTACTTACCCGGGTCTGCTCTAGCCCTAGCCCTCGGGAGTCAGGGAAGGGGAATTGCCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab