CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6374789|6374923
Strand -
CircType exon
Host Gene ENSG00000111319.11;
Algorism CIRI2;
Sequence CTGGTATGGGCTGCAGAGGTCTAGGGTCCTGCTCCTCCAGCTTGTTCCCCTTCATGAGCCCCGGAGTGGATTGGGGAGAGCAAGGGTCAGGGTCAAGGCTGAGCTCTGGGCCCTGAGTGCCCTCTCCCATCACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6374789|6374923 hsa-miR-504-5p 0 0 1
chr12:6374789|6374923 hsa-miR-504-3p 0 0 1
chr12:6374789|6374923 hsa-miR-510-5p 0 0 1
chr12:6374789|6374923 hsa-miR-510-3p 0 0 1
chr12:6374789|6374923 hsa-miR-765 0 1 1
chr12:6374789|6374923 hsa-miR-1205 0 0 1
chr12:6374789|6374923 hsa-miR-1286 0 0 1
chr12:6374789|6374923 hsa-miR-1266-5p 0 0 1
chr12:6374789|6374923 hsa-miR-1266-3p 0 0 1
chr12:6374789|6374923 hsa-miR-1184 0 0 1
chr12:6374789|6374923 hsa-miR-572 1 0 0
chr12:6374789|6374923 hsa-miR-637 1 0 0
chr12:6374789|6374923 hsa-miR-3154 1 0 0
chr12:6374789|6374923 hsa-miR-3918 0 1 0
chr12:6374789|6374923 hsa-miR-4437 0 1 0
chr12:6374789|6374923 hsa-miR-4489 1 0 0
chr12:6374789|6374923 hsa-miR-4518 0 1 0
chr12:6374789|6374923 hsa-miR-4780 0 1 0
chr12:6374789|6374923 hsa-miR-8060 0 1 0
chr12:6374789|6374923 hsa-miR-8085 0 1 0
chr12:6374789|6374923 hsa-miR-6734-5p 0 1 0
chr12:6374789|6374923 hsa-miR-6854-5p 0 1 0
chr12:6374789|6374923 hsa-miR-769-5p 1 0 0
chr12:6374789|6374923 hsa-miR-6727-5p 1 0 0
chr12:6374789|6374923 hsa-miR-4725-5p 0 1 0
chr12:6374789|6374923 hsa-miR-7109-3p 1 0 0
chr12:6374789|6374923 hsa-miR-5088-5p 1 1 0
chr12:6374789|6374923 hsa-miR-1226-5p 0 1 0
chr12:6374789|6374923 hsa-miR-6784-5p 1 1 0
chr12:6374789|6374923 hsa-miR-30c-2-3p 0 1 0
chr12:6374789|6374923 hsa-miR-619-3p 1 0 0
chr12:6374789|6374923 hsa-miR-6821-3p 0 1 0
chr12:6374789|6374923 hsa-miR-3616-3p 0 1 0
chr12:6374789|6374923 hsa-miR-7154-5p 0 1 0
chr12:6374789|6374923 hsa-miR-6864-5p 0 1 0
chr12:6374789|6374923 hsa-miR-7160-3p 0 1 0
chr12:6374789|6374923 hsa-miR-6813-3p 1 0 0
chr12:6374789|6374923 hsa-miR-4732-3p 0 1 0
chr12:6374789|6374923 hsa-miR-6782-3p 0 1 0
chr12:6374789|6374923 hsa-miR-328-3p 1 0 0
chr12:6374789|6374923 hsa-miR-4283 0 1 0
chr12:6374789|6374923 hsa-miR-3670 0 1 0
chr12:6374789|6374923 hsa-miR-4750-3p 0 1 0
chr12:6374789|6374923 hsa-miR-6759-3p 1 1 0
chr12:6374789|6374923 hsa-miR-6841-5p 0 1 0
chr12:6374789|6374923 hsa-miR-6775-5p 1 0 0
chr12:6374789|6374923 hsa-miR-11181-3p 0 1 0
chr12:6374789|6374923 hsa-miR-7111-5p 0 1 0
chr12:6374789|6374923 hsa-miR-6836-5p 1 1 0
chr12:6374789|6374923 hsa-miR-10396a-5p 1 0 0
chr12:6374789|6374923 hsa-miR-4685-5p 1 1 0
chr12:6374789|6374923 hsa-miR-30c-1-3p 0 1 0
chr12:6374789|6374923 hsa-miR-6750-5p 0 1 0
chr12:6374789|6374923 hsa-miR-6791-5p 1 0 0
chr12:6374789|6374923 hsa-miR-10397-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:6374789|6374923
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MQRSRVLLLQLVPLHEPRSGLGRARVRVKAELWALSALSHH
Nucleotide Sequence CTGCAGAGGTCTAGGGTCCTGCTCCTCCAGCTTGTTCCCCTTCATGAGCCCCGGAGTGGATTGGGGAGAGCAAGGGTCAGGGTCAAGGCTGAGCTCTGGGCCCTGAGTGCCCTCTCCCATCAC
CircID chr12:6374789|6374923
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MGCRGLGSCSSSLFPFMSPGVDWGEQGSGSRLSSGP
Nucleotide Sequence ATGGGCTGCAGAGGTCTAGGGTCCTGCTCCTCCAGCTTGTTCCCCTTCATGAGCCCCGGAGTGGATTGGGGAGAGCAAGGGTCAGGGTCAAGGCTGAGCTCTGGGCCCTGA
CircID chr12:6374789|6374923
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MGEGTQGPELSLDPDPCSPQSTPGLMKGNKLEEQDPRPLQPIP
Nucleotide Sequence ATGGGAGAGGGCACTCAGGGCCCAGAGCTCAGCCTTGACCCTGACCCTTGCTCTCCCCAATCCACTCCGGGGCTCATGAAGGGGAACAAGCTGGAGGAGCAGGACCCTAGACCTCTGCAGCCCATACCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab