CircRNA Information

General Information
circRNA Basic Information
CircID chr12:64238441|64238574
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCACTCAGCACGAAAGAAATCTGCATTCAGCCCTAAGAGTAGCTGCTTGGGCAGTGATCATAGCTCTGCTTTAAGGATAAGACTCTTATCTGTGACTACAGAAAGAGAAAAGGTTTCTCAAGGTTCTGAGTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:64238441|64238574 hsa-miR-517-5p 0 0 1
chr12:64238441|64238574 hsa-miR-517a-3p 0 0 1
chr12:64238441|64238574 hsa-miR-517c-3p 0 0 1
chr12:64238441|64238574 hsa-miR-539-5p 0 0 1
chr12:64238441|64238574 hsa-miR-539-3p 0 0 1
chr12:64238441|64238574 hsa-miR-580-5p 0 0 1
chr12:64238441|64238574 hsa-miR-580-3p 0 0 1
chr12:64238441|64238574 hsa-miR-646 0 1 1
chr12:64238441|64238574 hsa-miR-1296-5p 0 0 1
chr12:64238441|64238574 hsa-miR-1296-3p 0 0 1
chr12:64238441|64238574 hsa-miR-924 0 0 1
chr12:64238441|64238574 hsa-miR-501-5p 0 0 1
chr12:64238441|64238574 hsa-miR-362-5p 0 1 1
chr12:64238441|64238574 hsa-miR-1300 0 0 1
chr12:64238441|64238574 hsa-miR-1183 0 1 0
chr12:64238441|64238574 hsa-miR-4498 1 0 0
chr12:64238441|64238574 hsa-miR-4656 1 1 0
chr12:64238441|64238574 hsa-miR-4741 1 0 0
chr12:64238441|64238574 hsa-miR-12122 0 1 0
chr12:64238441|64238574 hsa-miR-4753-3p 0 1 0
chr12:64238441|64238574 hsa-miR-6890-3p 0 1 0
chr12:64238441|64238574 hsa-miR-5001-5p 1 0 0
chr12:64238441|64238574 hsa-miR-6846-5p 1 0 0
chr12:64238441|64238574 hsa-miR-324-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:64238441|64238574
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence LHSARKKSAFSPKSSCLGSDHSSALRIRLLSVTTEREKVSQGSE
Nucleotide Sequence CTGCACTCAGCACGAAAGAAATCTGCATTCAGCCCTAAGAGTAGCTGCTTGGGCAGTGATCATAGCTCTGCTTTAAGGATAAGACTCTTATCTGTGACTACAGAAAGAGAAAAGGTTTCTCAAGGTTCTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab