CircRNA Information

General Information
circRNA Basic Information
CircID chr12:64715966|64716197
Strand -
CircType exon
Host Gene ENSG00000135677.9;
Algorism CIRI2;
Sequence CTTGCCTTAATCCTTCCAGTGTTAACTGGCACTCCCTGTGGTTGGCAGCCACTGGAAAGTAGATGGCTATCACCTTCAAGAGCTACCTGGAATTGGCCTTTATCACAAGCTTACTGCTCTATTTCAGTGCAGCACCAGCCTAGAATTCACAAAAACATGAACAGAGCTTGGGTGACATGTTTTGAATTTGCAACCTTACCACACTGTGATGAACATCATAAAAAATGTATCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:64715966|64716197 hsa-miR-27a-5p 0 0 1
chr12:64715966|64716197 hsa-miR-27a-3p 0 0 1
chr12:64715966|64716197 hsa-miR-27b-5p 0 0 1
chr12:64715966|64716197 hsa-miR-27b-3p 0 0 1
chr12:64715966|64716197 hsa-miR-141-5p 0 0 1
chr12:64715966|64716197 hsa-miR-141-3p 0 0 1
chr12:64715966|64716197 hsa-miR-200a-5p 0 0 1
chr12:64715966|64716197 hsa-miR-200a-3p 0 0 1
chr12:64715966|64716197 hsa-miR-493-5p 0 0 1
chr12:64715966|64716197 hsa-miR-493-3p 0 0 1
chr12:64715966|64716197 hsa-miR-527 0 0 1
chr12:64715966|64716197 hsa-miR-506-5p 0 0 1
chr12:64715966|64716197 hsa-miR-506-3p 0 0 1
chr12:64715966|64716197 hsa-miR-604 0 0 1
chr12:64715966|64716197 hsa-miR-645 1 0 1
chr12:64715966|64716197 hsa-miR-647 0 0 1
chr12:64715966|64716197 hsa-miR-758-5p 0 0 1
chr12:64715966|64716197 hsa-miR-758-3p 0 0 1
chr12:64715966|64716197 hsa-miR-1323 0 0 1
chr12:64715966|64716197 hsa-miR-1206 0 0 1
chr12:64715966|64716197 hsa-miR-1257 0 0 1
chr12:64715966|64716197 hsa-miR-548o-3p 0 0 1
chr12:64715966|64716197 hsa-miR-1272 0 0 1
chr12:64715966|64716197 hsa-miR-1322 0 0 1
chr12:64715966|64716197 hsa-miR-1825 0 0 1
chr12:64715966|64716197 hsa-miR-548o 0 0 1
chr12:64715966|64716197 hsa-miR-145-5p 0 0 1
chr12:64715966|64716197 hsa-miR-199a-5p 0 0 1
chr12:64715966|64716197 hsa-miR-140-3p 0 0 1
chr12:64715966|64716197 hsa-miR-199b-5p 0 0 1
chr12:64715966|64716197 hsa-miR-518a-5p 0 0 1
chr12:64715966|64716197 hsa-miR-128 0 0 1
chr12:64715966|64716197 hsa-miR-220c 0 0 1
chr12:64715966|64716197 hsa-miR-138 0 0 1
chr12:64715966|64716197 hsa-miR-124 0 0 1
chr12:64715966|64716197 hsa-miR-762 1 0 0
chr12:64715966|64716197 hsa-miR-1202 1 0 0
chr12:64715966|64716197 hsa-miR-4492 1 0 0
chr12:64715966|64716197 hsa-miR-4508 1 0 0
chr12:64715966|64716197 hsa-miR-1587 1 0 0
chr12:64715966|64716197 hsa-miR-6860 1 0 0
chr12:64715966|64716197 hsa-miR-138-5p 1 0 0
chr12:64715966|64716197 hsa-miR-6806-5p 1 0 0
chr12:64715966|64716197 hsa-miR-3194-5p 1 0 0
chr12:64715966|64716197 hsa-miR-7855-5p 1 0 0
chr12:64715966|64716197 hsa-miR-4732-5p 1 0 0
chr12:64715966|64716197 hsa-miR-1207-5p 1 0 0
chr12:64715966|64716197 hsa-miR-6754-5p 1 0 0
chr12:64715966|64716197 hsa-miR-3620-5p 1 0 0
chr12:64715966|64716197 hsa-miR-6777-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:64715966|64716197
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence MESRWLSPSRATWNWPLSQAYCSISVQHQPRIHKNMNRAWVTCFEFATLPHCDEHHKKCI
Nucleotide Sequence CTGGAAAGTAGATGGCTATCACCTTCAAGAGCTACCTGGAATTGGCCTTTATCACAAGCTTACTGCTCTATTTCAGTGCAGCACCAGCCTAGAATTCACAAAAACATGAACAGAGCTTGGGTGACATGTTTTGAATTTGCAACCTTACCACACTGTGATGAACATCATAAAAAATGTATC
CircID chr12:64715966|64716197
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence MALPVVGSHWKVDGYHLQELPGIGLYHKLTALFQCSTSLEFTKT
Nucleotide Sequence CTGGCACTCCCTGTGGTTGGCAGCCACTGGAAAGTAGATGGCTATCACCTTCAAGAGCTACCTGGAATTGGCCTTTATCACAAGCTTACTGCTCTATTTCAGTGCAGCACCAGCCTAGAATTCACAAAAACATGA
CircID chr12:64715966|64716197
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MAITFKSYLELAFITSLLLYFSAAPA
Nucleotide Sequence ATGGCTATCACCTTCAAGAGCTACCTGGAATTGGCCTTTATCACAAGCTTACTGCTCTATTTCAGTGCAGCACCAGCCTAG
CircID chr12:64715966|64716197
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MKVIAIYFPVAANHRECQLTLEGLRQ
Nucleotide Sequence TTGAAGGTGATAGCCATCTACTTTCCAGTGGCTGCCAACCACAGGGAGTGCCAGTTAACACTGGAAGGATTAAGGCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab