CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6536029|6536226
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCACAGTCTGGGCACAAGCTTTGTACATGGTATTCACCACCCCACTATGCCACCCCAGGAATGCTTGCTGCTGCCTAGCTCAGCTGCACCCTTTAGGGAGAAAACGCTTGTACACTCAGCATCATCAAACTCAAAGGGCAGGAGTAAAGGTCAGAAATTAACTGGACAGGGCAAGCCCACCCCTTCTCTAAGTCCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6536029|6536226 hsa-miR-15a-5p 0 0 1
chr12:6536029|6536226 hsa-miR-15a-3p 0 0 1
chr12:6536029|6536226 hsa-miR-198 0 0 1
chr12:6536029|6536226 hsa-miR-15b-5p 0 0 1
chr12:6536029|6536226 hsa-miR-15b-3p 0 0 1
chr12:6536029|6536226 hsa-miR-195-5p 0 0 1
chr12:6536029|6536226 hsa-miR-195-3p 0 0 1
chr12:6536029|6536226 hsa-miR-424-5p 0 0 1
chr12:6536029|6536226 hsa-miR-424-3p 0 0 1
chr12:6536029|6536226 hsa-miR-497-5p 0 0 1
chr12:6536029|6536226 hsa-miR-497-3p 0 0 1
chr12:6536029|6536226 hsa-miR-608 1 0 1
chr12:6536029|6536226 hsa-miR-610 0 0 1
chr12:6536029|6536226 hsa-miR-1301-5p 0 0 1
chr12:6536029|6536226 hsa-miR-1301-3p 0 0 1
chr12:6536029|6536226 hsa-miR-874-5p 0 0 1
chr12:6536029|6536226 hsa-miR-874-3p 0 0 1
chr12:6536029|6536226 hsa-miR-541-5p 0 0 1
chr12:6536029|6536226 hsa-miR-541-3p 0 0 1
chr12:6536029|6536226 hsa-miR-938 0 0 1
chr12:6536029|6536226 hsa-miR-940 0 0 1
chr12:6536029|6536226 hsa-miR-1179 0 0 1
chr12:6536029|6536226 hsa-miR-1293 0 0 1
chr12:6536029|6536226 hsa-miR-1303 1 0 1
chr12:6536029|6536226 hsa-miR-1322 0 0 1
chr12:6536029|6536226 hsa-miR-145-5p 0 0 1
chr12:6536029|6536226 hsa-miR-146b-3p 0 0 1
chr12:6536029|6536226 hsa-miR-339-5p 0 0 1
chr12:6536029|6536226 hsa-miR-574-5p 0 0 1
chr12:6536029|6536226 hsa-miR-654-5p 0 0 1
chr12:6536029|6536226 hsa-miR-524-5p 0 0 1
chr12:6536029|6536226 hsa-miR-342-5p 0 0 1
chr12:6536029|6536226 hsa-miR-520d-5p 0 0 1
chr12:6536029|6536226 hsa-miR-16 0 0 1
chr12:6536029|6536226 hsa-miR-1976 1 0 0
chr12:6536029|6536226 hsa-miR-3196 1 0 0
chr12:6536029|6536226 hsa-miR-3937 1 0 0
chr12:6536029|6536226 hsa-miR-4651 1 0 0
chr12:6536029|6536226 hsa-miR-4656 1 0 0
chr12:6536029|6536226 hsa-miR-4663 1 0 0
chr12:6536029|6536226 hsa-miR-5572 1 0 0
chr12:6536029|6536226 hsa-miR-8089 1 0 0
chr12:6536029|6536226 hsa-miR-12115 1 0 0
chr12:6536029|6536226 hsa-miR-93-3p 1 0 0
chr12:6536029|6536226 hsa-miR-593-5p 1 0 0
chr12:6536029|6536226 hsa-miR-3622b-5p 1 0 0
chr12:6536029|6536226 hsa-miR-5589-5p 1 0 0
chr12:6536029|6536226 hsa-miR-432-5p 1 0 0
chr12:6536029|6536226 hsa-miR-7845-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6742-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6796-5p 1 0 0
chr12:6536029|6536226 hsa-miR-23a-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6782-5p 1 0 0
chr12:6536029|6536226 hsa-miR-4763-5p 1 0 0
chr12:6536029|6536226 hsa-miR-4640-5p 1 0 0
chr12:6536029|6536226 hsa-miR-885-3p 1 0 0
chr12:6536029|6536226 hsa-miR-4787-5p 1 0 0
chr12:6536029|6536226 hsa-miR-4763-3p 1 0 0
chr12:6536029|6536226 hsa-miR-6812-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6865-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6737-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6756-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6803-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6819-5p 1 0 0
chr12:6536029|6536226 hsa-miR-328-5p 1 0 0
chr12:6536029|6536226 hsa-miR-4632-5p 1 0 0
chr12:6536029|6536226 hsa-miR-4758-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6855-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6791-5p 1 0 0
chr12:6536029|6536226 hsa-miR-6775-3p 1 0 0
chr12:6536029|6536226 hsa-miR-9851-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:6536029|6536226
ORF Type ORF1
Protein Length 63
Nucleotide Length 189
Protein Sequence MGTSFVHGIHHPTMPPQECLLLPSSAAPFREKTLVHSASSNSKGRSKGQKLTGQGKPTPSLSP
Nucleotide Sequence CTGGGCACAAGCTTTGTACATGGTATTCACCACCCCACTATGCCACCCCAGGAATGCTTGCTGCTGCCTAGCTCAGCTGCACCCTTTAGGGAGAAAACGCTTGTACACTCAGCATCATCAAACTCAAAGGGCAGGAGTAAAGGTCAGAAATTAACTGGACAGGGCAAGCCCACCCCTTCTCTAAGTCCC
CircID chr12:6536029|6536226
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MYMVFTTPLCHPRNACCCLAQLHPLGRKRLYTQHHQTQRAGVKVRN
Nucleotide Sequence TTGTACATGGTATTCACCACCCCACTATGCCACCCCAGGAATGCTTGCTGCTGCCTAGCTCAGCTGCACCCTTTAGGGAGAAAACGCTTGTACACTCAGCATCATCAAACTCAAAGGGCAGGAGTAAAGGTCAGAAATTAA
CircID chr12:6536029|6536226
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MPFEFDDAECTSVFSLKGAAELGSSKHSWGGIVGW
Nucleotide Sequence CTGCCCTTTGAGTTTGATGATGCTGAGTGTACAAGCGTTTTCTCCCTAAAGGGTGCAGCTGAGCTAGGCAGCAGCAAGCATTCCTGGGGTGGCATAGTGGGGTGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab