CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6537860|6538234
Strand +
CircType exon
Host Gene ENSG00000111640.13;
Algorism CIRI2;
Sequence TCCCCAGCAGTGAGGGTCTCTCTCTTCCTCTTGTGCTCTTGCTGGGGCTGGTGGTCCAGGGGTCTTACTCCTTGGAGGCCATGTGGGCCATGAGGTCCACCACCCTGTTGCTGTAGCCAAATTCGTTGTCATACCTAGAAGATGAAAAGAGTTGTCAGGGCCCTTTTTCTGAGCCAGCCACCAGAGGGCGCCAGACCCTGCACTTTTTAAGAGCCAGTCTCTGGCCCCAGCCACATACCAGGAAATGAGCTTGACAAAGTGGTCGTTGAGGGCAATGCCAGCCCCAGCGTCAAAGGTGGAGGAGTGGGTGTCGCTGTTGAAGTCAGAGGAGACCACCTGGTGCTCAGTGTAGCCCAGGATGCCCTTGAGGGGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6537860|6538234 hsa-miR-17-5p 0 0 1
chr12:6537860|6538234 hsa-miR-17-3p 0 0 1
chr12:6537860|6538234 hsa-miR-20a-5p 0 0 1
chr12:6537860|6538234 hsa-miR-20a-3p 0 0 1
chr12:6537860|6538234 hsa-miR-29a-5p 0 0 1
chr12:6537860|6538234 hsa-miR-29a-3p 0 0 1
chr12:6537860|6538234 hsa-miR-93-5p 0 0 1
chr12:6537860|6538234 hsa-miR-93-3p 0 0 1
chr12:6537860|6538234 hsa-miR-106a-5p 0 0 1
chr12:6537860|6538234 hsa-miR-106a-3p 0 0 1
chr12:6537860|6538234 hsa-miR-149-5p 0 0 1
chr12:6537860|6538234 hsa-miR-149-3p 0 0 1
chr12:6537860|6538234 hsa-miR-106b-5p 0 0 1
chr12:6537860|6538234 hsa-miR-106b-3p 0 0 1
chr12:6537860|6538234 hsa-miR-29c-5p 0 0 1
chr12:6537860|6538234 hsa-miR-29c-3p 0 0 1
chr12:6537860|6538234 hsa-miR-335-5p 0 0 1
chr12:6537860|6538234 hsa-miR-335-3p 0 0 1
chr12:6537860|6538234 hsa-miR-345-5p 0 0 1
chr12:6537860|6538234 hsa-miR-345-3p 0 0 1
chr12:6537860|6538234 hsa-miR-425-5p 0 0 1
chr12:6537860|6538234 hsa-miR-425-3p 0 0 1
chr12:6537860|6538234 hsa-miR-20b-5p 0 0 1
chr12:6537860|6538234 hsa-miR-20b-3p 0 0 1
chr12:6537860|6538234 hsa-miR-492 0 0 1
chr12:6537860|6538234 hsa-miR-519d-5p 0 0 1
chr12:6537860|6538234 hsa-miR-519d-3p 0 0 1
chr12:6537860|6538234 hsa-miR-617 0 0 1
chr12:6537860|6538234 hsa-miR-421 0 0 1
chr12:6537860|6538234 hsa-miR-874-5p 0 0 1
chr12:6537860|6538234 hsa-miR-874-3p 0 0 1
chr12:6537860|6538234 hsa-miR-892b 0 0 1
chr12:6537860|6538234 hsa-miR-760 0 0 1
chr12:6537860|6538234 hsa-miR-1182 0 0 1
chr12:6537860|6538234 hsa-miR-1226-5p 0 0 1
chr12:6537860|6538234 hsa-miR-1226-3p 0 0 1
chr12:6537860|6538234 hsa-miR-1291 0 0 1
chr12:6537860|6538234 hsa-miR-1293 0 0 1
chr12:6537860|6538234 hsa-miR-1256 0 0 1
chr12:6537860|6538234 hsa-miR-299-3p 0 0 1
chr12:6537860|6538234 hsa-miR-566 0 0 1
chr12:6537860|6538234 hsa-miR-331-5p 0 0 1
chr12:6537860|6538234 hsa-miR-331-3p 0 0 1
chr12:6537860|6538234 hsa-miR-483-3p 0 0 1
chr12:6537860|6538234 hsa-miR-519b-3p 0 0 1
chr12:6537860|6538234 hsa-miR-519c-3p 0 0 1
chr12:6537860|6538234 hsa-miR-323-5p 0 0 1
chr12:6537860|6538234 hsa-miR-24 0 0 1
chr12:6537860|6538234 hsa-miR-549 0 0 1
chr12:6537860|6538234 hsa-miR-29b 0 0 1
chr12:6537860|6538234 hsa-miR-519a 0 0 1
chr12:6537860|6538234 hsa-miR-637 1 0 0
chr12:6537860|6538234 hsa-miR-762 1 0 0
chr12:6537860|6538234 hsa-miR-665 1 0 0
chr12:6537860|6538234 hsa-miR-4498 1 0 0
chr12:6537860|6538234 hsa-miR-5787 1 0 0
chr12:6537860|6538234 hsa-miR-6165 1 0 0
chr12:6537860|6538234 hsa-miR-6861-5p 1 0 0
chr12:6537860|6538234 hsa-miR-6720-5p 1 0 0
chr12:6537860|6538234 hsa-miR-4474-3p 1 0 0
chr12:6537860|6538234 hsa-miR-6768-5p 1 0 0
chr12:6537860|6538234 hsa-miR-6748-5p 1 0 0
chr12:6537860|6538234 hsa-miR-877-3p 1 0 0
chr12:6537860|6538234 hsa-miR-185-3p 1 0 0
chr12:6537860|6538234 hsa-miR-3194-5p 1 0 0
chr12:6537860|6538234 hsa-miR-4640-5p 1 0 0
chr12:6537860|6538234 hsa-miR-6809-3p 1 0 0
chr12:6537860|6538234 hsa-miR-4715-5p 1 0 0
chr12:6537860|6538234 hsa-miR-1184 1 0 0
chr12:6537860|6538234 hsa-miR-4763-3p 1 0 0
chr12:6537860|6538234 hsa-miR-6769b-5p 1 0 0
chr12:6537860|6538234 hsa-miR-6787-5p 1 0 0
chr12:6537860|6538234 hsa-miR-6756-5p 1 0 0
chr12:6537860|6538234 hsa-miR-6848-5p 1 0 0
chr12:6537860|6538234 hsa-miR-3085-5p 1 0 0
chr12:6537860|6538234 hsa-miR-10396a-3p 1 0 0
chr12:6537860|6538234 hsa-miR-7107-3p 1 0 0
chr12:6537860|6538234 hsa-miR-4723-3p 1 0 0
chr12:6537860|6538234 hsa-miR-6783-3p 1 0 0
chr12:6537860|6538234 hsa-miR-10397-5p 1 0 0
chr12:6537860|6538234 hsa-miR-99b-3p 1 0 0
chr12:6537860|6538234 hsa-miR-4684-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:6537860|6538234
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MAPATYQEMSLTKWSLRAMPAPASKVEEWVSLLKSEETTWCSV
Nucleotide Sequence CTGGCCCCAGCCACATACCAGGAAATGAGCTTGACAAAGTGGTCGTTGAGGGCAATGCCAGCCCCAGCGTCAAAGGTGGAGGAGTGGGTGTCGCTGTTGAAGTCAGAGGAGACCACCTGGTGCTCAGTGTAG
CircID chr12:6537860|6538234
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MLGLVVQGSYSLEAMWAMRSTTLLL
Nucleotide Sequence TTGCTGGGGCTGGTGGTCCAGGGGTCTTACTCCTTGGAGGCCATGTGGGCCATGAGGTCCACCACCCTGTTGCTGTAG
CircID chr12:6537860|6538234
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MSYLEDEKSCQGPFSEPATRGRQTLHFLRASLWPQPHTRK
Nucleotide Sequence TTGTCATACCTAGAAGATGAAAAGAGTTGTCAGGGCCCTTTTTCTGAGCCAGCCACCAGAGGGCGCCAGACCCTGCACTTTTTAAGAGCCAGTCTCTGGCCCCAGCCACATACCAGGAAATGA
CircID chr12:6537860|6538234
ORF Type ORF4
Protein Length 119
Nucleotide Length 357
Protein Sequence MGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYVAGARDWLLKSAGSGALWWLAQKKGPDNSFHLLGMTTNLATATGWWTSWPTWPPRSKTPGPPAPARAQEEERDPHCWG
Nucleotide Sequence CTGGGCTACACTGAGCACCAGGTGGTCTCCTCTGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTGGGGCTGGCATTGCCCTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGTGGCTGGGGCCAGAGACTGGCTCTTAAAAAGTGCAGGGTCTGGCGCCCTCTGGTGGCTGGCTCAGAAAAAGGGCCCTGACAACTCTTTTCATCTTCTAGGTATGACAACGAATTTGGCTACAGCAACAGGGTGGTGGACCTCATGGCCCACATGGCCTCCAAGGAGTAAGACCCCTGGACCACCAGCCCCAGCAAGAGCACAAGAGGAAGAGAGAGACCCTCACTGCTGGGGA
CircID chr12:6537860|6538234
ORF Type ORF5
Protein Length 46
Nucleotide Length 141
Protein Sequence MSTRWSPLTSTATPTPPPLTLGLALPSTTTLSSSFPGMWLGPETGS
Nucleotide Sequence CTGAGCACCAGGTGGTCTCCTCTGACTTCAACAGCGACACCCACTCCTCCACCTTTGACGCTGGGGCTGGCATTGCCCTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGTGGCTGGGGCCAGAGACTGGCTCTTAA
CircID chr12:6537860|6538234
ORF Type ORF6
Protein Length 28
Nucleotide Length 87
Protein Sequence MVCGWGQRLALKKCRVWRPLVAGSEKGP
Nucleotide Sequence CTGGTATGTGGCTGGGGCCAGAGACTGGCTCTTAAAAAGTGCAGGGTCTGGCGCCCTCTGGTGGCTGGCTCAGAAAAAGGGCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab