CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6570413|6570659
Strand +
CircType exon
Host Gene ENSG00000111642.13;
Algorism CIRI2;
Sequence CACCTCCACCGCTGAGCAGTGACCTTCCTCACTTTCTCTTGTCCCAGCTTCTCCCCTGGGGGCCTGAGAGACCCTCACCTTCCTTCTGCCCATCTTCCATGTTGTAAAGGAACAGCCCCAGTGCACTGGGGGAGGGGAGGGAGTGAGGGGCAGTGGTGCCCTTCCTGCAGAAGAGACATGCAGCAGTAGCGCTGGCGCCATCTGCAGGAGCTGGCGGGCTGGCCTTCTGGACCCTGGCTTCTCCCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6570413|6570659 hsa-miR-198 0 1 1
chr12:6570413|6570659 hsa-miR-148a-5p 0 0 1
chr12:6570413|6570659 hsa-miR-148a-3p 0 0 1
chr12:6570413|6570659 hsa-miR-152-5p 0 0 1
chr12:6570413|6570659 hsa-miR-152-3p 0 0 1
chr12:6570413|6570659 hsa-miR-148b-5p 0 0 1
chr12:6570413|6570659 hsa-miR-148b-3p 0 0 1
chr12:6570413|6570659 hsa-miR-493-5p 0 0 1
chr12:6570413|6570659 hsa-miR-493-3p 0 0 1
chr12:6570413|6570659 hsa-miR-593-5p 0 0 1
chr12:6570413|6570659 hsa-miR-593-3p 0 0 1
chr12:6570413|6570659 hsa-miR-652-5p 0 0 1
chr12:6570413|6570659 hsa-miR-652-3p 0 0 1
chr12:6570413|6570659 hsa-miR-298 1 1 1
chr12:6570413|6570659 hsa-miR-939-5p 0 0 1
chr12:6570413|6570659 hsa-miR-939-3p 0 0 1
chr12:6570413|6570659 hsa-miR-1182 0 0 1
chr12:6570413|6570659 hsa-miR-1236-5p 0 0 1
chr12:6570413|6570659 hsa-miR-1236-3p 0 0 1
chr12:6570413|6570659 hsa-miR-1205 0 0 1
chr12:6570413|6570659 hsa-miR-1286 0 0 1
chr12:6570413|6570659 hsa-miR-1266-5p 0 0 1
chr12:6570413|6570659 hsa-miR-1266-3p 0 0 1
chr12:6570413|6570659 hsa-miR-1252-5p 0 0 1
chr12:6570413|6570659 hsa-miR-1252-3p 0 0 1
chr12:6570413|6570659 hsa-miR-1825 0 0 1
chr12:6570413|6570659 hsa-miR-1184 0 0 1
chr12:6570413|6570659 hsa-miR-566 0 0 1
chr12:6570413|6570659 hsa-miR-361-3p 0 1 1
chr12:6570413|6570659 hsa-miR-767-3p 0 0 1
chr12:6570413|6570659 hsa-miR-324-3p 0 1 1
chr12:6570413|6570659 hsa-miR-483-3p 0 1 1
chr12:6570413|6570659 hsa-miR-1302 0 0 1
chr12:6570413|6570659 hsa-miR-7 0 0 1
chr12:6570413|6570659 hsa-miR-544 0 0 1
chr12:6570413|6570659 hsa-miR-923 0 0 1
chr12:6570413|6570659 hsa-miR-596 1 1 0
chr12:6570413|6570659 hsa-miR-661 1 0 0
chr12:6570413|6570659 hsa-miR-762 1 0 0
chr12:6570413|6570659 hsa-miR-765 1 0 0
chr12:6570413|6570659 hsa-miR-665 1 0 0
chr12:6570413|6570659 hsa-miR-1202 1 0 0
chr12:6570413|6570659 hsa-miR-3122 1 1 0
chr12:6570413|6570659 hsa-miR-3147 1 1 0
chr12:6570413|6570659 hsa-miR-3153 0 1 0
chr12:6570413|6570659 hsa-miR-3175 0 1 0
chr12:6570413|6570659 hsa-miR-320e 1 1 0
chr12:6570413|6570659 hsa-miR-4298 1 1 0
chr12:6570413|6570659 hsa-miR-4258 0 1 0
chr12:6570413|6570659 hsa-miR-4429 1 1 0
chr12:6570413|6570659 hsa-miR-3135b 1 0 0
chr12:6570413|6570659 hsa-miR-4462 1 0 0
chr12:6570413|6570659 hsa-miR-4476 0 1 0
chr12:6570413|6570659 hsa-miR-4489 1 0 0
chr12:6570413|6570659 hsa-miR-4493 0 1 0
chr12:6570413|6570659 hsa-miR-4516 0 1 0
chr12:6570413|6570659 hsa-miR-3974 0 1 0
chr12:6570413|6570659 hsa-miR-4647 0 1 0
chr12:6570413|6570659 hsa-miR-4656 1 0 0
chr12:6570413|6570659 hsa-miR-4675 0 1 0
chr12:6570413|6570659 hsa-miR-4739 1 0 0
chr12:6570413|6570659 hsa-miR-4741 1 0 0
chr12:6570413|6570659 hsa-miR-4767 1 0 0
chr12:6570413|6570659 hsa-miR-5698 1 0 0
chr12:6570413|6570659 hsa-miR-5703 1 1 0
chr12:6570413|6570659 hsa-miR-5787 1 0 0
chr12:6570413|6570659 hsa-miR-8085 1 0 0
chr12:6570413|6570659 hsa-miR-8089 1 0 0
chr12:6570413|6570659 hsa-miR-9899 1 1 0
chr12:6570413|6570659 hsa-miR-3150a-3p 0 1 0
chr12:6570413|6570659 hsa-miR-6861-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6825-5p 1 0 0
chr12:6570413|6570659 hsa-miR-4687-3p 1 0 0
chr12:6570413|6570659 hsa-miR-6833-5p 0 1 0
chr12:6570413|6570659 hsa-miR-6089 1 0 0
chr12:6570413|6570659 hsa-miR-6746-5p 1 0 0
chr12:6570413|6570659 hsa-miR-4722-5p 0 1 0
chr12:6570413|6570659 hsa-miR-197-5p 1 0 0
chr12:6570413|6570659 hsa-miR-5589-5p 1 0 0
chr12:6570413|6570659 hsa-miR-7110-3p 0 1 0
chr12:6570413|6570659 hsa-miR-3605-5p 0 1 0
chr12:6570413|6570659 hsa-miR-3180-3p 1 0 0
chr12:6570413|6570659 hsa-miR-185-3p 0 1 0
chr12:6570413|6570659 hsa-miR-6798-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6760-5p 1 0 0
chr12:6570413|6570659 hsa-miR-3194-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6772-3p 0 1 0
chr12:6570413|6570659 hsa-miR-7109-5p 1 0 0
chr12:6570413|6570659 hsa-miR-1226-5p 1 0 0
chr12:6570413|6570659 hsa-miR-4786-3p 0 1 0
chr12:6570413|6570659 hsa-miR-1229-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6803-3p 0 1 0
chr12:6570413|6570659 hsa-miR-1228-5p 0 1 0
chr12:6570413|6570659 hsa-miR-6824-5p 1 1 0
chr12:6570413|6570659 hsa-miR-3158-5p 0 1 0
chr12:6570413|6570659 hsa-miR-6878-5p 0 1 0
chr12:6570413|6570659 hsa-miR-6895-3p 0 1 0
chr12:6570413|6570659 hsa-miR-4749-3p 0 1 0
chr12:6570413|6570659 hsa-miR-6795-3p 0 1 0
chr12:6570413|6570659 hsa-miR-2277-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6760-3p 0 1 0
chr12:6570413|6570659 hsa-miR-10400-5p 1 0 0
chr12:6570413|6570659 hsa-miR-1233-5p 1 0 0
chr12:6570413|6570659 hsa-miR-1273h-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6870-5p 1 0 0
chr12:6570413|6570659 hsa-miR-1343-5p 1 0 0
chr12:6570413|6570659 hsa-miR-3180 1 0 0
chr12:6570413|6570659 hsa-miR-6803-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6722-3p 1 0 0
chr12:6570413|6570659 hsa-miR-6763-5p 0 1 0
chr12:6570413|6570659 hsa-miR-6788-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6797-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6879-5p 0 1 0
chr12:6570413|6570659 hsa-miR-7111-5p 1 0 0
chr12:6570413|6570659 hsa-miR-3620-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6780b-5p 1 0 0
chr12:6570413|6570659 hsa-miR-328-5p 1 0 0
chr12:6570413|6570659 hsa-miR-4649-5p 1 0 0
chr12:6570413|6570659 hsa-miR-4685-5p 1 0 0
chr12:6570413|6570659 hsa-miR-4725-3p 1 0 0
chr12:6570413|6570659 hsa-miR-6729-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6735-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6738-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6795-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6846-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6848-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6858-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6887-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6889-5p 0 1 0
chr12:6570413|6570659 hsa-miR-4723-5p 1 0 0
chr12:6570413|6570659 hsa-miR-1910-3p 0 1 0
chr12:6570413|6570659 hsa-miR-6511a-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6731-5p 1 0 0
chr12:6570413|6570659 hsa-miR-4646-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6876-5p 0 1 0
chr12:6570413|6570659 hsa-miR-4667-5p 1 0 0
chr12:6570413|6570659 hsa-miR-6791-5p 1 0 0
chr12:6570413|6570659 hsa-miR-320a-3p 1 1 0
chr12:6570413|6570659 hsa-miR-320b 1 1 0
chr12:6570413|6570659 hsa-miR-320c 1 1 0
chr12:6570413|6570659 hsa-miR-9851-3p 1 0 0
chr12:6570413|6570659 hsa-miR-4756-5p 0 1 0
chr12:6570413|6570659 hsa-miR-4768-5p 0 1 0
chr12:6570413|6570659 hsa-miR-6848-3p 1 1 0
chr12:6570413|6570659 hsa-miR-320d 1 0 0
chr12:6570413|6570659 hsa-miR-370-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:6570413|6570659
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MRDPHLPSAHLPCCKGTAPVHWGRGGSEGQWCPSCRRDMQQ
Nucleotide Sequence CTGAGAGACCCTCACCTTCCTTCTGCCCATCTTCCATGTTGTAAAGGAACAGCCCCAGTGCACTGGGGGAGGGGAGGGAGTGAGGGGCAGTGGTGCCCTTCCTGCAGAAGAGACATGCAGCAGTAG
CircID chr12:6570413|6570659
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MPIFHVVKEQPQCTGGGEGVRGSGALPAEETCSSSAGAICRSWRAGLLDPGFSP
Nucleotide Sequence CTGCCCATCTTCCATGTTGTAAAGGAACAGCCCCAGTGCACTGGGGGAGGGGAGGGAGTGAGGGGCAGTGGTGCCCTTCCTGCAGAAGAGACATGCAGCAGTAGCGCTGGCGCCATCTGCAGGAGCTGGCGGGCTGGCCTTCTGGACCCTGGCTTCTCCCCA
CircID chr12:6570413|6570659
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MSSDLPHFLLSQLLPWGPERPSPSFCPSSML
Nucleotide Sequence CTGAGCAGTGACCTTCCTCACTTTCTCTTGTCCCAGCTTCTCCCCTGGGGGCCTGAGAGACCCTCACCTTCCTTCTGCCCATCTTCCATGTTGTAA
CircID chr12:6570413|6570659
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MQKRHAAVALAPSAGAGGLAFWTLASP
Nucleotide Sequence CTGCAGAAGAGACATGCAGCAGTAGCGCTGGCGCCATCTGCAGGAGCTGGCGGGCTGGCCTTCTGGACCCTGGCTTCTCCC
CircID chr12:6570413|6570659
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MGLFLYNMEDGQKEGEGLSGPQGRSWDKRK
Nucleotide Sequence CTGGGGCTGTTCCTTTACAACATGGAAGATGGGCAGAAGGAAGGTGAGGGTCTCTCAGGCCCCCAGGGGAGAAGCTGGGACAAGAGAAAGTGA
CircID chr12:6570413|6570659
ORF Type ORF6
Protein Length 69
Nucleotide Length 207
Protein Sequence MQMAPALLLHVSSAGRAPLPLTPSPPPVHWGCSFTTWKMGRRKVRVSQAPRGEAGTRESEEGHCSAVEV
Nucleotide Sequence CTGCAGATGGCGCCAGCGCTACTGCTGCATGTCTCTTCTGCAGGAAGGGCACCACTGCCCCTCACTCCCTCCCCTCCCCCAGTGCACTGGGGCTGTTCCTTTACAACATGGAAGATGGGCAGAAGGAAGGTGAGGGTCTCTCAGGCCCCCAGGGGAGAAGCTGGGACAAGAGAAAGTGAGGAAGGTCACTGCTCAGCGGTGGAGGTG
CircID chr12:6570413|6570659
ORF Type ORF7
Protein Length 34
Nucleotide Length 105
Protein Sequence MSLLQEGHHCPSLPPLPQCTGAVPLQHGRWAEGR
Nucleotide Sequence ATGTCTCTTCTGCAGGAAGGGCACCACTGCCCCTCACTCCCTCCCCTCCCCCAGTGCACTGGGGCTGTTCCTTTACAACATGGAAGATGGGCAGAAGGAAGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab