CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6578084|6578481
Strand +
CircType exon
Host Gene ENSG00000111642.13;
Algorism CIRI2;
Sequence CTGAATGATGAGAAACAGAAGAAAAATATTAAACAACGTTTCATGTTTAACATTGCAGATGGTGGTTTTACTGGTATGGAAATGAGGGGCCCACCAGGGTTAGAAGGATCTGATGTGAAATTGGGGTTCTTGTCAGAAACCACGGTACAGGGACTTTACCTCTTTACCTCTGTTTGATGAGGGAATGCCAAACTGATAGTGGGTTCTGTGGAGAAAGCCAGAAGCAAATTATATGAAATGGATCCAGGGGTAGGGGATGGTGGGGGACAAGAATAAGTAGCTTTTTCAATTCTCACAGATGTTTGCTTCCCCCCACCCCCAACCTTCCCTAAATTCCTCCTCAGAGTTGCACTCCCTTTGGCAGAATGAAGAGCGGGCAGCCACAGTTACCAAGAAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6578084|6578481 hsa-miR-23a-5p 0 0 1
chr12:6578084|6578481 hsa-miR-23a-3p 0 0 1
chr12:6578084|6578481 hsa-miR-96-5p 0 0 1
chr12:6578084|6578481 hsa-miR-96-3p 0 0 1
chr12:6578084|6578481 hsa-miR-182-5p 0 0 1
chr12:6578084|6578481 hsa-miR-182-3p 0 0 1
chr12:6578084|6578481 hsa-miR-23b-5p 0 0 1
chr12:6578084|6578481 hsa-miR-23b-3p 0 0 1
chr12:6578084|6578481 hsa-miR-130a-5p 0 0 1
chr12:6578084|6578481 hsa-miR-130a-3p 0 0 1
chr12:6578084|6578481 hsa-miR-149-5p 0 0 1
chr12:6578084|6578481 hsa-miR-149-3p 0 0 1
chr12:6578084|6578481 hsa-miR-301a-5p 0 0 1
chr12:6578084|6578481 hsa-miR-301a-3p 0 0 1
chr12:6578084|6578481 hsa-miR-130b-5p 0 0 1
chr12:6578084|6578481 hsa-miR-130b-3p 0 0 1
chr12:6578084|6578481 hsa-miR-578 0 0 1
chr12:6578084|6578481 hsa-miR-580-5p 0 0 1
chr12:6578084|6578481 hsa-miR-580-3p 0 0 1
chr12:6578084|6578481 hsa-miR-583 0 1 1
chr12:6578084|6578481 hsa-miR-587 0 0 1
chr12:6578084|6578481 hsa-miR-604 0 0 1
chr12:6578084|6578481 hsa-miR-608 0 0 1
chr12:6578084|6578481 hsa-miR-625-5p 0 0 1
chr12:6578084|6578481 hsa-miR-625-3p 0 0 1
chr12:6578084|6578481 hsa-miR-647 0 1 1
chr12:6578084|6578481 hsa-miR-1271-5p 0 0 1
chr12:6578084|6578481 hsa-miR-1271-3p 0 0 1
chr12:6578084|6578481 hsa-miR-454-5p 0 0 1
chr12:6578084|6578481 hsa-miR-454-3p 0 0 1
chr12:6578084|6578481 hsa-miR-1298-5p 0 0 1
chr12:6578084|6578481 hsa-miR-1298-3p 0 0 1
chr12:6578084|6578481 hsa-miR-891b 0 0 1
chr12:6578084|6578481 hsa-miR-541-5p 0 0 1
chr12:6578084|6578481 hsa-miR-541-3p 0 0 1
chr12:6578084|6578481 hsa-miR-889-5p 0 0 1
chr12:6578084|6578481 hsa-miR-889-3p 0 0 1
chr12:6578084|6578481 hsa-miR-301b-5p 0 0 1
chr12:6578084|6578481 hsa-miR-301b-3p 0 0 1
chr12:6578084|6578481 hsa-miR-1237-5p 0 0 1
chr12:6578084|6578481 hsa-miR-1237-3p 0 0 1
chr12:6578084|6578481 hsa-miR-1248 0 0 1
chr12:6578084|6578481 hsa-miR-1256 0 0 1
chr12:6578084|6578481 hsa-miR-1275 0 0 1
chr12:6578084|6578481 hsa-miR-1276 0 0 1
chr12:6578084|6578481 hsa-miR-486-5p 0 1 1
chr12:6578084|6578481 hsa-miR-296-5p 0 0 1
chr12:6578084|6578481 hsa-miR-339-5p 0 0 1
chr12:6578084|6578481 hsa-miR-654-5p 0 0 1
chr12:6578084|6578481 hsa-miR-361-3p 0 0 1
chr12:6578084|6578481 hsa-miR-331-3p 0 1 1
chr12:6578084|6578481 hsa-miR-515-5p 0 0 1
chr12:6578084|6578481 hsa-miR-548b-3p 0 1 1
chr12:6578084|6578481 hsa-miR-1274a 0 0 1
chr12:6578084|6578481 hsa-miR-642 0 0 1
chr12:6578084|6578481 hsa-miR-1274b 0 0 1
chr12:6578084|6578481 hsa-miR-661 1 0 0
chr12:6578084|6578481 hsa-miR-4257 0 1 0
chr12:6578084|6578481 hsa-miR-4270 1 0 0
chr12:6578084|6578481 hsa-miR-4271 0 1 0
chr12:6578084|6578481 hsa-miR-4456 0 1 0
chr12:6578084|6578481 hsa-miR-4476 1 0 0
chr12:6578084|6578481 hsa-miR-4651 0 1 0
chr12:6578084|6578481 hsa-miR-4689 1 1 0
chr12:6578084|6578481 hsa-miR-4739 1 0 0
chr12:6578084|6578481 hsa-miR-4741 1 0 0
chr12:6578084|6578481 hsa-miR-6127 1 0 0
chr12:6578084|6578481 hsa-miR-6133 1 0 0
chr12:6578084|6578481 hsa-miR-8089 1 0 0
chr12:6578084|6578481 hsa-miR-12119 1 1 0
chr12:6578084|6578481 hsa-miR-134-3p 1 0 0
chr12:6578084|6578481 hsa-miR-6734-5p 1 0 0
chr12:6578084|6578481 hsa-miR-504-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6765-5p 1 0 0
chr12:6578084|6578481 hsa-miR-205-5p 0 1 0
chr12:6578084|6578481 hsa-miR-7106-5p 1 0 0
chr12:6578084|6578481 hsa-miR-6720-5p 1 0 0
chr12:6578084|6578481 hsa-miR-106a-3p 0 1 0
chr12:6578084|6578481 hsa-miR-766-5p 0 1 0
chr12:6578084|6578481 hsa-miR-1225-3p 1 0 0
chr12:6578084|6578481 hsa-miR-7847-3p 1 0 0
chr12:6578084|6578481 hsa-miR-4709-3p 0 1 0
chr12:6578084|6578481 hsa-miR-127-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6871-5p 1 0 0
chr12:6578084|6578481 hsa-miR-6798-5p 1 0 0
chr12:6578084|6578481 hsa-miR-2467-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6782-5p 0 1 0
chr12:6578084|6578481 hsa-miR-7109-5p 0 1 0
chr12:6578084|6578481 hsa-miR-1229-5p 1 0 0
chr12:6578084|6578481 hsa-miR-7161-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6739-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6824-5p 1 1 0
chr12:6578084|6578481 hsa-miR-3162-5p 1 1 0
chr12:6578084|6578481 hsa-miR-4646-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6743-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6813-3p 1 0 0
chr12:6578084|6578481 hsa-miR-7112-3p 1 0 0
chr12:6578084|6578481 hsa-miR-6832-5p 0 1 0
chr12:6578084|6578481 hsa-miR-501-5p 0 1 0
chr12:6578084|6578481 hsa-miR-4749-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6795-3p 1 0 0
chr12:6578084|6578481 hsa-miR-6729-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6732-3p 0 1 0
chr12:6578084|6578481 hsa-miR-3162-3p 0 1 0
chr12:6578084|6578481 hsa-miR-4677-3p 0 1 0
chr12:6578084|6578481 hsa-miR-497-3p 1 1 0
chr12:6578084|6578481 hsa-miR-6752-5p 1 0 0
chr12:6578084|6578481 hsa-miR-6756-5p 0 1 0
chr12:6578084|6578481 hsa-miR-6803-5p 1 1 0
chr12:6578084|6578481 hsa-miR-6842-5p 0 1 0
chr12:6578084|6578481 hsa-miR-7110-5p 1 1 0
chr12:6578084|6578481 hsa-miR-6751-5p 1 1 0
chr12:6578084|6578481 hsa-miR-6763-5p 1 0 0
chr12:6578084|6578481 hsa-miR-6780b-5p 0 1 0
chr12:6578084|6578481 hsa-miR-10526-3p 1 0 0
chr12:6578084|6578481 hsa-miR-4725-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6794-5p 1 0 0
chr12:6578084|6578481 hsa-miR-6858-5p 1 1 0
chr12:6578084|6578481 hsa-miR-6887-5p 0 1 0
chr12:6578084|6578481 hsa-miR-6889-5p 1 0 0
chr12:6578084|6578481 hsa-miR-4723-5p 1 0 0
chr12:6578084|6578481 hsa-miR-4758-5p 1 0 0
chr12:6578084|6578481 hsa-miR-4716-3p 1 1 0
chr12:6578084|6578481 hsa-miR-6766-5p 0 1 0
chr12:6578084|6578481 hsa-miR-6511a-3p 0 1 0
chr12:6578084|6578481 hsa-miR-6792-3p 1 1 0
chr12:6578084|6578481 hsa-miR-6511b-3p 0 1 0
chr12:6578084|6578481 hsa-miR-3059-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:6578084|6578481
ORF Type ORF1
Protein Length 58
Nucleotide Length 177
Protein Sequence LNDEKQKKNIKQRFMFNIADGGFTGMEMRGPPGLEGSDVKLGFLSETTVQGLYLFTSV
Nucleotide Sequence CTGAATGATGAGAAACAGAAGAAAAATATTAAACAACGTTTCATGTTTAACATTGCAGATGGTGGTTTTACTGGTATGGAAATGAGGGGCCCACCAGGGTTAGAAGGATCTGATGTGAAATTGGGGTTCTTGTCAGAAACCACGGTACAGGGACTTTACCTCTTTACCTCTGTTTGA
CircID chr12:6578084|6578481
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MIVGSVEKARSKLYEMDPGVGDGGGQE
Nucleotide Sequence CTGATAGTGGGTTCTGTGGAGAAAGCCAGAAGCAAATTATATGAAATGGATCCAGGGGTAGGGGATGGTGGGGGACAAGAATAA
CircID chr12:6578084|6578481
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MMRNRRKILNNVSCLTLQMVVLLVWK
Nucleotide Sequence ATGATGAGAAACAGAAGAAAAATATTAAACAACGTTTCATGTTTAACATTGCAGATGGTGGTTTTACTGGTATGGAAATGA
CircID chr12:6578084|6578481
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MFASPHPQPSLNSSSELHSLWQNEERAATVTKK
Nucleotide Sequence ATGTTTGCTTCCCCCCACCCCCAACCTTCCCTAAATTCCTCCTCAGAGTTGCACTCCCTTTGGCAGAATGAAGAGCGGGCAGCCACAGTTACCAAGAAG
CircID chr12:6578084|6578481
ORF Type ORF5
Protein Length 76
Nucleotide Length 231
Protein Sequence MWLPALHSAKGSATLRRNLGKVGGGGKQTSVRIEKATYSCPPPSPTPGSISYNLLLAFSTEPTISLAFPHQTEVKR
Nucleotide Sequence CTGTGGCTGCCCGCTCTTCATTCTGCCAAAGGGAGTGCAACTCTGAGGAGGAATTTAGGGAAGGTTGGGGGTGGGGGGAAGCAAACATCTGTGAGAATTGAAAAAGCTACTTATTCTTGTCCCCCACCATCCCCTACCCCTGGATCCATTTCATATAATTTGCTTCTGGCTTTCTCCACAGAACCCACTATCAGTTTGGCATTCCCTCATCAAACAGAGGTAAAGAGGTAA
CircID chr12:6578084|6578481
ORF Type ORF6
Protein Length 41
Nucleotide Length 126
Protein Sequence MKKLLILVPHHPLPLDPFHIICFWLSPQNPLSVWHSLIKQR
Nucleotide Sequence TTGAAAAAGCTACTTATTCTTGTCCCCCACCATCCCCTACCCCTGGATCCATTTCATATAATTTGCTTCTGGCTTTCTCCACAGAACCCACTATCAGTTTGGCATTCCCTCATCAAACAGAGGTAA
CircID chr12:6578084|6578481
ORF Type ORF7
Protein Length 35
Nucleotide Length 108
Protein Sequence MVTVAARSSFCQRECNSEEEFREGWGWGEANICEN
Nucleotide Sequence TTGGTAACTGTGGCTGCCCGCTCTTCATTCTGCCAAAGGGAGTGCAACTCTGAGGAGGAATTTAGGGAAGGTTGGGGGTGGGGGGAAGCAAACATCTGTGAGAATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab