CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6581087|6581368
Strand -
CircType exon
Host Gene ENSG00000111642.13;
Algorism CIRI2;
Sequence CTCTGCCTTTTCCACTTTCTCCTCTCCCTCAGGGGGTTCAACAACGACCTTTTCATCCTCTGAGGCAGGGGCAGGGGCCTGTGTACACTTCAAAGGAAAAAAAAACAAAAACAAAACAGATGAAGCAGACAGGCCAGCAACTAAAAGGAAGACTGGACTTACACATTTGTCTTTAGTATGGCATTCAGTCACCCCATCTCTTACCTCAATGGCAGTCTCAGGGGCTGTAGATTTAACCTCCTTTTCTCCTTCTATGCTCTCTTCTTCTTTGAGGCTATTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6581087|6581368 hsa-let-7b-5p 0 0 1
chr12:6581087|6581368 hsa-let-7b-3p 0 0 1
chr12:6581087|6581368 hsa-let-7c-5p 0 0 1
chr12:6581087|6581368 hsa-let-7c-3p 0 0 1
chr12:6581087|6581368 hsa-let-7d-5p 0 0 1
chr12:6581087|6581368 hsa-let-7d-3p 0 0 1
chr12:6581087|6581368 hsa-let-7e-5p 0 0 1
chr12:6581087|6581368 hsa-let-7e-3p 0 0 1
chr12:6581087|6581368 hsa-miR-98-5p 0 0 1
chr12:6581087|6581368 hsa-miR-98-3p 0 0 1
chr12:6581087|6581368 hsa-let-7g-5p 0 0 1
chr12:6581087|6581368 hsa-let-7g-3p 0 0 1
chr12:6581087|6581368 hsa-let-7i-5p 0 0 1
chr12:6581087|6581368 hsa-let-7i-3p 0 0 1
chr12:6581087|6581368 hsa-miR-134-5p 0 0 1
chr12:6581087|6581368 hsa-miR-134-3p 0 0 1
chr12:6581087|6581368 hsa-miR-346 0 0 1
chr12:6581087|6581368 hsa-miR-202-5p 0 0 1
chr12:6581087|6581368 hsa-miR-202-3p 0 0 1
chr12:6581087|6581368 hsa-miR-573 0 0 1
chr12:6581087|6581368 hsa-miR-608 1 0 1
chr12:6581087|6581368 hsa-miR-632 1 1 1
chr12:6581087|6581368 hsa-miR-653-5p 0 0 1
chr12:6581087|6581368 hsa-miR-653-3p 0 0 1
chr12:6581087|6581368 hsa-miR-139-5p 0 0 1
chr12:6581087|6581368 hsa-miR-324-3p 0 0 1
chr12:6581087|6581368 hsa-miR-342-5p 0 0 1
chr12:6581087|6581368 hsa-miR-125a-5p 0 1 1
chr12:6581087|6581368 hsa-miR-125b 0 0 1
chr12:6581087|6581368 hsa-let-7a 0 0 1
chr12:6581087|6581368 hsa-let-7f 0 0 1
chr12:6581087|6581368 hsa-miR-765 1 1 0
chr12:6581087|6581368 hsa-miR-2110 1 0 0
chr12:6581087|6581368 hsa-miR-3154 1 0 0
chr12:6581087|6581368 hsa-miR-3185 1 0 0
chr12:6581087|6581368 hsa-miR-4257 1 0 0
chr12:6581087|6581368 hsa-miR-3945 1 0 0
chr12:6581087|6581368 hsa-miR-4428 0 1 0
chr12:6581087|6581368 hsa-miR-4439 0 1 0
chr12:6581087|6581368 hsa-miR-4510 0 1 0
chr12:6581087|6581368 hsa-miR-4533 1 0 0
chr12:6581087|6581368 hsa-miR-4644 0 1 0
chr12:6581087|6581368 hsa-miR-4651 1 0 0
chr12:6581087|6581368 hsa-miR-4689 1 0 0
chr12:6581087|6581368 hsa-miR-4706 1 0 0
chr12:6581087|6581368 hsa-miR-4739 1 0 0
chr12:6581087|6581368 hsa-miR-4784 1 1 0
chr12:6581087|6581368 hsa-miR-5739 1 0 0
chr12:6581087|6581368 hsa-miR-6127 1 1 0
chr12:6581087|6581368 hsa-miR-6130 0 1 0
chr12:6581087|6581368 hsa-miR-6133 1 0 0
chr12:6581087|6581368 hsa-miR-8052 1 0 0
chr12:6581087|6581368 hsa-miR-8085 1 1 0
chr12:6581087|6581368 hsa-miR-12118 0 1 0
chr12:6581087|6581368 hsa-miR-214-5p 0 1 0
chr12:6581087|6581368 hsa-miR-6734-5p 1 1 0
chr12:6581087|6581368 hsa-miR-6894-5p 0 1 0
chr12:6581087|6581368 hsa-miR-210-5p 0 1 0
chr12:6581087|6581368 hsa-miR-6510-5p 1 0 0
chr12:6581087|6581368 hsa-miR-7847-3p 1 0 0
chr12:6581087|6581368 hsa-miR-4695-5p 1 0 0
chr12:6581087|6581368 hsa-miR-6746-5p 1 0 0
chr12:6581087|6581368 hsa-miR-4709-3p 1 0 0
chr12:6581087|6581368 hsa-miR-1288-3p 1 0 0
chr12:6581087|6581368 hsa-miR-3605-5p 0 1 0
chr12:6581087|6581368 hsa-miR-6760-5p 1 1 0
chr12:6581087|6581368 hsa-miR-6881-5p 1 0 0
chr12:6581087|6581368 hsa-miR-3150b-3p 0 1 0
chr12:6581087|6581368 hsa-miR-6735-3p 0 1 0
chr12:6581087|6581368 hsa-miR-1226-5p 1 0 0
chr12:6581087|6581368 hsa-miR-185-5p 1 0 0
chr12:6581087|6581368 hsa-miR-4732-5p 1 0 0
chr12:6581087|6581368 hsa-miR-7854-3p 1 0 0
chr12:6581087|6581368 hsa-miR-6802-5p 1 0 0
chr12:6581087|6581368 hsa-miR-3120-5p 0 1 0
chr12:6581087|6581368 hsa-miR-6752-3p 0 1 0
chr12:6581087|6581368 hsa-miR-6856-3p 0 1 0
chr12:6581087|6581368 hsa-miR-483-5p 1 0 0
chr12:6581087|6581368 hsa-miR-6748-3p 0 1 0
chr12:6581087|6581368 hsa-miR-3177-5p 0 1 0
chr12:6581087|6581368 hsa-miR-6756-5p 1 0 0
chr12:6581087|6581368 hsa-miR-6819-5p 0 1 0
chr12:6581087|6581368 hsa-miR-4728-5p 1 1 0
chr12:6581087|6581368 hsa-miR-6831-5p 1 0 0
chr12:6581087|6581368 hsa-miR-3199 1 1 0
chr12:6581087|6581368 hsa-miR-6731-5p 0 1 0
chr12:6581087|6581368 hsa-miR-3173-3p 1 1 0
chr12:6581087|6581368 hsa-miR-6876-5p 1 0 0
chr12:6581087|6581368 hsa-miR-6791-5p 0 1 0
chr12:6581087|6581368 hsa-miR-7107-3p 0 1 0
chr12:6581087|6581368 hsa-miR-6801-3p 0 1 0
chr12:6581087|6581368 hsa-miR-6810-3p 0 1 0
chr12:6581087|6581368 hsa-miR-6817-5p 1 1 0
chr12:6581087|6581368 hsa-miR-125b-5p 0 1 0
chr12:6581087|6581368 hsa-let-7f-2-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:6581087|6581368
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MAFSHPISYLNGSLRGCRFNLLFSFYALFFFEAIF
Nucleotide Sequence ATGGCATTCAGTCACCCCATCTCTTACCTCAATGGCAGTCTCAGGGGCTGTAGATTTAACCTCCTTTTCTCCTTCTATGCTCTCTTCTTCTTTGAGGCTATTTTC
CircID chr12:6581087|6581368
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MSLVWHSVTPSLTSMAVSGAVDLTSFSPSMLSSSLRLF
Nucleotide Sequence TTGTCTTTAGTATGGCATTCAGTCACCCCATCTCTTACCTCAATGGCAGTCTCAGGGGCTGTAGATTTAACCTCCTTTTCTCCTTCTATGCTCTCTTCTTCTTTGAGGCTATTT
CircID chr12:6581087|6581368
ORF Type ORF3
Protein Length 57
Nucleotide Length 174
Protein Sequence LPFPLSPLPQGVQQRPFHPLRQGQGPVYTSKEKKTKTKQMKQTGQQLKGRLDLHICL
Nucleotide Sequence CTGCCTTTTCCACTTTCTCCTCTCCCTCAGGGGGTTCAACAACGACCTTTTCATCCTCTGAGGCAGGGGCAGGGGCCTGTGTACACTTCAAAGGAAAAAAAAACAAAAACAAAACAGATGAAGCAGACAGGCCAGCAACTAAAAGGAAGACTGGACTTACACATTTGTCTTTAG
CircID chr12:6581087|6581368
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MSASSVLFLFFFPLKCTQAPAPASEDEKVVVEPPEGEEKVEKAE
Nucleotide Sequence CTGTCTGCTTCATCTGTTTTGTTTTTGTTTTTTTTTCCTTTGAAGTGTACACAGGCCCCTGCCCCTGCCTCAGAGGATGAAAAGGTCGTTGTTGAACCCCCTGAGGGAGAGGAGAAAGTGGAAAAGGCAGAG
CircID chr12:6581087|6581368
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MCKSSLPFSCWPVCFICFVFVFFSFEVYTGPCPCLRG
Nucleotide Sequence ATGTGTAAGTCCAGTCTTCCTTTTAGTTGCTGGCCTGTCTGCTTCATCTGTTTTGTTTTTGTTTTTTTTTCCTTTGAAGTGTACACAGGCCCCTGCCCCTGCCTCAGAGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab