CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6587528|6587949
Strand -
CircType exon
Host Gene ENSG00000111642.13;
Algorism CIRI2;
Sequence ACTGCTATCTTCTCCCTCTTTGTTGTCTCCTCCTCCATCAGTGGCTTCATCCTTGAATAGTTCCTCAGTGCCAAATTTGAGGATATCATCAAGCTCCTGTTTGGACATAGATCCAGTCTTGGAGCCCAGCCCAGGCCGCACCACTAGATGCGTCAGCATCATTTTCTTCTTTGCCACCTGCGTGATGCGCTCCTCCACTGACGCACGGGTCACAAACCGGTAGATCATTACCTTTTTATTTTGCCCAATCCGGTGAGCTCTGCTAAAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6587528|6587949 hsa-miR-96-5p 0 0 1
chr12:6587528|6587949 hsa-miR-96-3p 0 0 1
chr12:6587528|6587949 hsa-miR-182-5p 0 0 1
chr12:6587528|6587949 hsa-miR-182-3p 0 0 1
chr12:6587528|6587949 hsa-miR-583 0 0 1
chr12:6587528|6587949 hsa-miR-661 0 1 1
chr12:6587528|6587949 hsa-miR-758-5p 0 0 1
chr12:6587528|6587949 hsa-miR-758-3p 0 0 1
chr12:6587528|6587949 hsa-miR-1271-5p 0 0 1
chr12:6587528|6587949 hsa-miR-1271-3p 0 0 1
chr12:6587528|6587949 hsa-miR-765 1 1 1
chr12:6587528|6587949 hsa-miR-675-5p 0 0 1
chr12:6587528|6587949 hsa-miR-675-3p 0 0 1
chr12:6587528|6587949 hsa-miR-708-5p 0 0 1
chr12:6587528|6587949 hsa-miR-708-3p 0 0 1
chr12:6587528|6587949 hsa-miR-1234-3p 0 0 1
chr12:6587528|6587949 hsa-miR-1243 0 1 1
chr12:6587528|6587949 hsa-miR-1253 0 0 1
chr12:6587528|6587949 hsa-miR-548m 0 0 1
chr12:6587528|6587949 hsa-miR-1322 0 1 1
chr12:6587528|6587949 hsa-miR-1234 0 0 1
chr12:6587528|6587949 hsa-miR-140-5p 0 0 1
chr12:6587528|6587949 hsa-miR-28-5p 0 0 1
chr12:6587528|6587949 hsa-miR-628-5p 0 1 1
chr12:6587528|6587949 hsa-miR-198 0 1 0
chr12:6587528|6587949 hsa-miR-612 1 0 0
chr12:6587528|6587949 hsa-miR-638 1 0 0
chr12:6587528|6587949 hsa-miR-650 1 0 0
chr12:6587528|6587949 hsa-miR-663a 1 0 0
chr12:6587528|6587949 hsa-miR-762 1 1 0
chr12:6587528|6587949 hsa-miR-663b 1 0 0
chr12:6587528|6587949 hsa-miR-1270 1 0 0
chr12:6587528|6587949 hsa-miR-1272 0 1 0
chr12:6587528|6587949 hsa-miR-2861 1 0 0
chr12:6587528|6587949 hsa-miR-3147 1 0 0
chr12:6587528|6587949 hsa-miR-3175 1 1 0
chr12:6587528|6587949 hsa-miR-4271 1 0 0
chr12:6587528|6587949 hsa-miR-3612 1 0 0
chr12:6587528|6587949 hsa-miR-3662 0 1 0
chr12:6587528|6587949 hsa-miR-3665 1 0 0
chr12:6587528|6587949 hsa-miR-378g 0 1 0
chr12:6587528|6587949 hsa-miR-4428 1 0 0
chr12:6587528|6587949 hsa-miR-4434 0 1 0
chr12:6587528|6587949 hsa-miR-4466 1 0 0
chr12:6587528|6587949 hsa-miR-4487 1 0 0
chr12:6587528|6587949 hsa-miR-4492 0 1 0
chr12:6587528|6587949 hsa-miR-4505 1 1 0
chr12:6587528|6587949 hsa-miR-4507 1 0 0
chr12:6587528|6587949 hsa-miR-4510 0 1 0
chr12:6587528|6587949 hsa-miR-4518 1 0 0
chr12:6587528|6587949 hsa-miR-4534 1 1 0
chr12:6587528|6587949 hsa-miR-1587 1 1 0
chr12:6587528|6587949 hsa-miR-4689 1 0 0
chr12:6587528|6587949 hsa-miR-4739 1 1 0
chr12:6587528|6587949 hsa-miR-4779 1 1 0
chr12:6587528|6587949 hsa-miR-4784 1 0 0
chr12:6587528|6587949 hsa-miR-5093 0 1 0
chr12:6587528|6587949 hsa-miR-5695 0 1 0
chr12:6587528|6587949 hsa-miR-5698 1 0 0
chr12:6587528|6587949 hsa-miR-6127 0 1 0
chr12:6587528|6587949 hsa-miR-6130 0 1 0
chr12:6587528|6587949 hsa-miR-6133 1 1 0
chr12:6587528|6587949 hsa-miR-6165 1 0 0
chr12:6587528|6587949 hsa-miR-8060 1 1 0
chr12:6587528|6587949 hsa-miR-8082 0 1 0
chr12:6587528|6587949 hsa-miR-8085 1 0 0
chr12:6587528|6587949 hsa-miR-9718 0 1 0
chr12:6587528|6587949 hsa-miR-12118 1 0 0
chr12:6587528|6587949 hsa-miR-12122 1 0 0
chr12:6587528|6587949 hsa-miR-12128 1 1 0
chr12:6587528|6587949 hsa-miR-6734-5p 1 0 0
chr12:6587528|6587949 hsa-miR-504-3p 1 0 0
chr12:6587528|6587949 hsa-miR-6809-5p 0 1 0
chr12:6587528|6587949 hsa-miR-3150a-3p 1 0 0
chr12:6587528|6587949 hsa-miR-7106-5p 1 1 0
chr12:6587528|6587949 hsa-miR-6894-5p 1 0 0
chr12:6587528|6587949 hsa-miR-25-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6510-5p 1 0 0
chr12:6587528|6587949 hsa-miR-139-3p 1 0 0
chr12:6587528|6587949 hsa-miR-6880-5p 1 1 0
chr12:6587528|6587949 hsa-miR-7847-3p 1 1 0
chr12:6587528|6587949 hsa-miR-4695-5p 1 0 0
chr12:6587528|6587949 hsa-miR-7154-3p 1 0 0
chr12:6587528|6587949 hsa-miR-27b-5p 0 1 0
chr12:6587528|6587949 hsa-miR-7108-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6827-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6760-5p 0 1 0
chr12:6587528|6587949 hsa-miR-3150b-3p 1 1 0
chr12:6587528|6587949 hsa-miR-6810-5p 1 0 0
chr12:6587528|6587949 hsa-miR-939-3p 0 1 0
chr12:6587528|6587949 hsa-miR-5088-5p 1 1 0
chr12:6587528|6587949 hsa-miR-3127-5p 1 0 0
chr12:6587528|6587949 hsa-miR-1908-5p 1 0 0
chr12:6587528|6587949 hsa-miR-296-3p 1 0 0
chr12:6587528|6587949 hsa-miR-7854-3p 1 0 0
chr12:6587528|6587949 hsa-miR-4787-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6789-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6878-5p 1 1 0
chr12:6587528|6587949 hsa-miR-7846-3p 1 0 0
chr12:6587528|6587949 hsa-miR-7112-3p 0 1 0
chr12:6587528|6587949 hsa-miR-4746-3p 1 0 0
chr12:6587528|6587949 hsa-miR-5002-5p 0 1 0
chr12:6587528|6587949 hsa-miR-372-5p 0 1 0
chr12:6587528|6587949 hsa-miR-6778-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6865-5p 1 1 0
chr12:6587528|6587949 hsa-miR-6870-5p 1 0 0
chr12:6587528|6587949 hsa-miR-1343-5p 1 0 0
chr12:6587528|6587949 hsa-miR-5001-5p 1 1 0
chr12:6587528|6587949 hsa-miR-6756-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6803-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6815-5p 0 1 0
chr12:6587528|6587949 hsa-miR-7107-5p 0 1 0
chr12:6587528|6587949 hsa-miR-11181-3p 1 1 0
chr12:6587528|6587949 hsa-miR-1249-5p 0 1 0
chr12:6587528|6587949 hsa-miR-6722-3p 1 0 0
chr12:6587528|6587949 hsa-miR-6774-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6797-5p 1 0 0
chr12:6587528|6587949 hsa-miR-7111-5p 1 0 0
chr12:6587528|6587949 hsa-miR-3620-5p 1 1 0
chr12:6587528|6587949 hsa-miR-4728-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6780b-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6836-5p 1 0 0
chr12:6587528|6587949 hsa-miR-10396b-5p 1 0 0
chr12:6587528|6587949 hsa-miR-4685-5p 1 0 0
chr12:6587528|6587949 hsa-miR-4749-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6738-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6858-5p 1 0 0
chr12:6587528|6587949 hsa-miR-4723-5p 1 1 0
chr12:6587528|6587949 hsa-miR-6885-5p 1 0 0
chr12:6587528|6587949 hsa-miR-6758-5p 0 1 0
chr12:6587528|6587949 hsa-miR-1914-3p 1 0 0
chr12:6587528|6587949 hsa-miR-4716-3p 1 1 0
chr12:6587528|6587949 hsa-miR-6750-5p 1 0 0
chr12:6587528|6587949 hsa-miR-10400-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:6587528|6587949
ORF Type ORF1
Protein Length 73
Nucleotide Length 222
Protein Sequence LLSSPSLLSPPPSVASSLNSSSVPNLRISSSSCLDIDPVLEPSPGRTTRCVSIIFFFATCVMRSSTDARVTNR
Nucleotide Sequence CTGCTATCTTCTCCCTCTTTGTTGTCTCCTCCTCCATCAGTGGCTTCATCCTTGAATAGTTCCTCAGTGCCAAATTTGAGGATATCATCAAGCTCCTGTTTGGACATAGATCCAGTCTTGGAGCCCAGCCCAGGCCGCACCACTAGATGCGTCAGCATCATTTTCTTCTTTGCCACCTGCGTGATGCGCTCCTCCACTGACGCACGGGTCACAAACCGGTAG
CircID chr12:6587528|6587949
ORF Type ORF2
Protein Length 76
Nucleotide Length 228
Protein Sequence MIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSS
Nucleotide Sequence ATGATCTACCGGTTTGTGACCCGTGCGTCAGTGGAGGAGCGCATCACGCAGGTGGCAAAGAAGAAAATGATGCTGACGCATCTAGTGGTGCGGCCTGGGCTGGGCTCCAAGACTGGATCTATGTCCAAACAGGAGCTTGATGATATCCTCAAATTTGGCACTGAGGAACTATTCAAGGATGAAGCCACTGATGGAGGAGGAGACAACAAAGAGGGAGAAGATAGCAGT
CircID chr12:6587528|6587949
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MGWAPRLDLCPNRSLMISSNLALRNYSRMKPLMEEETTKREKIA
Nucleotide Sequence CTGGGCTGGGCTCCAAGACTGGATCTATGTCCAAACAGGAGCTTGATGATATCCTCAAATTTGGCACTGAGGAACTATTCAAGGATGAAGCCACTGATGGAGGAGGAGACAACAAAGAGGGAGAAGATAGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab