CircRNA Information

General Information
circRNA Basic Information
CircID chr12:66145841|66153448
Strand -
CircType exon
Host Gene ENSG00000228144.2;ENSG00000155957.17;
Algorism find_circ;CIRI2;DCC;
Sequence CCTTTCTGAGAAAAGTCTACAGCATTCTTTCTCTGCAGGTTCTCTTAACTACAGTGACTTCAACAGTTTTTTTATACTTTGAGTCTGTACGGACATTTGTACATGAGAGTCCTGCCTTAATTTTGCTGTTTGCCCTCGGATCTCTGGGTTTGATTTTTGCGTTGATTTTAAACAGACATAAGTATCCCCTTAACCTGTACCTACTTTTTGGATTTACGCTGTTGGAAGCTCTGACTGTGGCAGTTGTTGTTACTTTCTATGATGTATATATTATTCTGCAAGCTTTCATACTGACTACTACAGTATTTTTTGGTTTGACTGTGTATACTCTACAATCTAAGAAGGATTTCAGCAAATTTGGAGCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:66145841|66153448 hsa-miR-144-5p 0 0 1
chr12:66145841|66153448 hsa-miR-144-3p 0 0 1
chr12:66145841|66153448 hsa-miR-545-5p 0 0 1
chr12:66145841|66153448 hsa-miR-545-3p 0 0 1
chr12:66145841|66153448 hsa-miR-656-5p 0 0 1
chr12:66145841|66153448 hsa-miR-656-3p 0 0 1
chr12:66145841|66153448 hsa-miR-659-5p 0 0 1
chr12:66145841|66153448 hsa-miR-659-3p 0 0 1
chr12:66145841|66153448 hsa-miR-892a 0 1 1
chr12:66145841|66153448 hsa-miR-943 0 0 1
chr12:66145841|66153448 hsa-miR-1272 0 0 1
chr12:66145841|66153448 hsa-miR-1322 0 0 1
chr12:66145841|66153448 hsa-miR-139-5p 0 0 1
chr12:66145841|66153448 hsa-miR-129-5p 0 0 1
chr12:66145841|66153448 hsa-miR-1283 0 0 1
chr12:66145841|66153448 hsa-miR-485-3p 0 0 1
chr12:66145841|66153448 hsa-miR-876-5p 0 0 1
chr12:66145841|66153448 hsa-miR-544 0 0 1
chr12:66145841|66153448 hsa-miR-768-5p 0 0 1
chr12:66145841|66153448 hsa-miR-101 0 0 1
chr12:66145841|66153448 hsa-miR-1246 1 0 0
chr12:66145841|66153448 hsa-miR-3154 1 0 0
chr12:66145841|66153448 hsa-miR-3167 0 1 0
chr12:66145841|66153448 hsa-miR-3924 1 0 0
chr12:66145841|66153448 hsa-miR-4476 1 0 0
chr12:66145841|66153448 hsa-miR-7974 1 0 0
chr12:66145841|66153448 hsa-miR-2276-3p 0 1 0
chr12:66145841|66153448 hsa-miR-508-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:66145841|66153448
ORF Type ORF1
Protein Length 104
Nucleotide Length 312
Protein Sequence VTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALILNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVYTLQSKKDFSKFGA
Nucleotide Sequence GTGACTTCAACAGTTTTTTTATACTTTGAGTCTGTACGGACATTTGTACATGAGAGTCCTGCCTTAATTTTGCTGTTTGCCCTCGGATCTCTGGGTTTGATTTTTGCGTTGATTTTAAACAGACATAAGTATCCCCTTAACCTGTACCTACTTTTTGGATTTACGCTGTTGGAAGCTCTGACTGTGGCAGTTGTTGTTACTTTCTATGATGTATATATTATTCTGCAAGCTTTCATACTGACTACTACAGTATTTTTTGGTTTGACTGTGTATACTCTACAATCTAAGAAGGATTTCAGCAAATTTGGAGCA
CircID chr12:66145841|66153448
ORF Type ORF2
Protein Length 80
Nucleotide Length 240
Protein Sequence KVTTTATVRASNSVNPKSRYRLRGYLCLFKINAKIKPRDPRANSKIKAGLSCTNVRTDSKYKKTVEVTVVKRTCRERML*
Nucleotide Sequence AAAGTAACAACAACTGCCACAGTCAGAGCTTCCAACAGCGTAAATCCAAAAAGTAGGTACAGGTTAAGGGGATACTTATGTCTGTTTAAAATCAACGCAAAAATCAAACCCAGAGATCCGAGGGCAAACAGCAAAATTAAGGCAGGACTCTCATGTACAAATGTCCGTACAGACTCAAAGTATAAAAAAACTGTTGAAGTCACTGTAGTTAAGAGAACCTGCAGAGAAAGAATGCTGTAG
CircID chr12:66145841|66153448
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MLKSFLDCRVYTVKPKNTVVVSMKACRIIYTS
Nucleotide Sequence TTGCTGAAATCCTTCTTAGATTGTAGAGTATACACAGTCAAACCAAAAAATACTGTAGTAGTCAGTATGAAAGCTTGCAGAATAATATATACATCATAG
CircID chr12:66145841|66153448
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MQAFILTTTVFFGLTVYTLQSKKDFSKFGA
Nucleotide Sequence CTGCAAGCTTTCATACTGACTACTACAGTATTTTTTGGTTTGACTGTGTATACTCTACAATCTAAGAAGGATTTCAGCAAATTTGGAGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr12:66145841|66153448 U2AF2 11 6 8
chr12:66145841|66153448 MOV10 0 4 0
chr12:66145841|66153448 ELAVL1 4 6 0
chr12:66145841|66153448 PRPF8 0 0 1
chr12:66145841|66153448 UPF1 0 1 0
chr12:66145841|66153448 SRSF10 0 1 0
chr12:66145841|66153448 TAF15 0 1 0
chr12:66145841|66153448 FUS 0 1 0
chr12:66145841|66153448 DGCR8 1 0 0
chr12:66145841|66153448 SRSF1 0 1 0
chr12:66145841|66153448 NOP58 2 2 1
chr12:66145841|66153448 U2AF1 1 0 3
chr12:66145841|66153448 NOP56 0 2 1
chr12:66145841|66153448 DDX54 0 0 4
chr12:66145841|66153448 LSM11 0 1 0
chr12:66145841|66153448 PCBP2 0 1 0
chr12:66145841|66153448 HNRNPA2B1 0 2 0
chr12:66145841|66153448 HNRNPL 0 1 0
chr12:66145841|66153448 PTBP1 0 2 1
chr12:66145841|66153448 PRKRA 0 1 0
chr12:66145841|66153448 RBFOX2 0 2 0
chr12:66145841|66153448 DDX3X 1 1 3
chr12:66145841|66153448 ZC3H7B 0 1 0
chr12:66145841|66153448 AUH 0 1 0
chr12:66145841|66153448 ACIN1 0 0 1
chr12:66145841|66153448 LIN28B 0 0 7
chr12:66145841|66153448 LIN28A 0 0 1
chr12:66145841|66153448 SND1 0 1 1
chr12:66145841|66153448 IGF2BP1 0 1 5
chr12:66145841|66153448 IGF2BP3 0 1 2
chr12:66145841|66153448 IGF2BP2 1 2 3
chr12:66145841|66153448 TARDBP 0 1 0
chr12:66145841|66153448 KHSRP 0 2 0
chr12:66145841|66153448 RBM47 0 0 3
chr12:66145841|66153448 CSTF2T 0 0 1
chr12:66145841|66153448 AGO2 1 1 2
chr12:66145841|66153448 EIF4A3 0 2 3
chr12:66145841|66153448 FBL 1 0 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab