CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6839532|6839692
Strand -
CircType exon
Host Gene ENSG00000110811.18;
Algorism CIRI2;
Sequence AGGAAGCCCCTGTGTGACATCAGGAGCAGAACAGCAAGCTCTCTGTCCCTGCACCCCCACCATCTTGGGGACCTACAAGGGCCTGGACTCAGAGGACAGTGCACAGGCTAGCCTGGAGCTCACCAGGCCTGGGGAGCTGGGACGGGGCCCCGCTGCCGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6839532|6839692 hsa-miR-377-5p 0 0 1
chr12:6839532|6839692 hsa-miR-377-3p 0 0 1
chr12:6839532|6839692 hsa-miR-596 0 0 1
chr12:6839532|6839692 hsa-miR-541-5p 0 0 1
chr12:6839532|6839692 hsa-miR-541-3p 0 0 1
chr12:6839532|6839692 hsa-miR-744-5p 0 0 1
chr12:6839532|6839692 hsa-miR-744-3p 0 0 1
chr12:6839532|6839692 hsa-miR-1247-5p 0 0 1
chr12:6839532|6839692 hsa-miR-1247-3p 0 0 1
chr12:6839532|6839692 hsa-miR-296-5p 0 1 1
chr12:6839532|6839692 hsa-miR-885-3p 1 1 1
chr12:6839532|6839692 hsa-miR-654-5p 0 0 1
chr12:6839532|6839692 hsa-miR-767-3p 0 0 1
chr12:6839532|6839692 hsa-miR-342-5p 0 0 1
chr12:6839532|6839692 hsa-miR-516a-3p 0 0 1
chr12:6839532|6839692 hsa-miR-220c 0 0 1
chr12:6839532|6839692 hsa-miR-663a 1 0 0
chr12:6839532|6839692 hsa-miR-3909 0 1 0
chr12:6839532|6839692 hsa-miR-3921 0 1 0
chr12:6839532|6839692 hsa-miR-4448 1 0 0
chr12:6839532|6839692 hsa-miR-4647 0 1 0
chr12:6839532|6839692 hsa-miR-4706 1 0 0
chr12:6839532|6839692 hsa-miR-5572 1 0 0
chr12:6839532|6839692 hsa-miR-8073 1 0 0
chr12:6839532|6839692 hsa-miR-211-3p 1 1 0
chr12:6839532|6839692 hsa-miR-4665-3p 1 0 0
chr12:6839532|6839692 hsa-miR-7845-5p 0 1 0
chr12:6839532|6839692 hsa-miR-503-5p 1 0 0
chr12:6839532|6839692 hsa-miR-2467-3p 1 0 0
chr12:6839532|6839692 hsa-miR-7855-5p 0 1 0
chr12:6839532|6839692 hsa-miR-6772-3p 0 1 0
chr12:6839532|6839692 hsa-miR-423-5p 1 0 0
chr12:6839532|6839692 hsa-miR-6811-3p 1 1 0
chr12:6839532|6839692 hsa-miR-1911-3p 0 1 0
chr12:6839532|6839692 hsa-miR-1914-5p 0 1 0
chr12:6839532|6839692 hsa-miR-6760-3p 0 1 0
chr12:6839532|6839692 hsa-miR-1296-3p 1 1 0
chr12:6839532|6839692 hsa-miR-6851-3p 0 1 0
chr12:6839532|6839692 hsa-miR-10400-5p 1 0 0
chr12:6839532|6839692 hsa-miR-4763-3p 1 0 0
chr12:6839532|6839692 hsa-miR-6787-5p 1 0 0
chr12:6839532|6839692 hsa-miR-6816-5p 1 0 0
chr12:6839532|6839692 hsa-miR-6752-5p 1 1 0
chr12:6839532|6839692 hsa-miR-6803-5p 1 1 0
chr12:6839532|6839692 hsa-miR-6819-5p 0 1 0
chr12:6839532|6839692 hsa-miR-7110-5p 1 1 0
chr12:6839532|6839692 hsa-miR-6751-5p 0 1 0
chr12:6839532|6839692 hsa-miR-6836-5p 1 0 0
chr12:6839532|6839692 hsa-miR-10396a-5p 0 1 0
chr12:6839532|6839692 hsa-miR-10396b-5p 1 0 0
chr12:6839532|6839692 hsa-miR-1237-5p 1 0 0
chr12:6839532|6839692 hsa-miR-1909-3p 1 0 0
chr12:6839532|6839692 hsa-miR-4745-5p 1 0 0
chr12:6839532|6839692 hsa-miR-4749-5p 1 0 0
chr12:6839532|6839692 hsa-miR-6795-5p 1 0 0
chr12:6839532|6839692 hsa-miR-1914-3p 1 0 0
chr12:6839532|6839692 hsa-miR-3184-5p 1 0 0
chr12:6839532|6839692 hsa-miR-10392-3p 1 1 0
chr12:6839532|6839692 hsa-miR-4653-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:6839532|6839692
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MCDIRSRTASSLSLHPHHLGDLQGPGLRGQCTG
Nucleotide Sequence CTGTGTGACATCAGGAGCAGAACAGCAAGCTCTCTGTCCCTGCACCCCCACCATCTTGGGGACCTACAAGGGCCTGGACTCAGAGGACAGTGCACAGGCTAG
CircID chr12:6839532|6839692
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MGTYKGLDSEDSAQASLELTRPGELGRGPAAG
Nucleotide Sequence TTGGGGACCTACAAGGGCCTGGACTCAGAGGACAGTGCACAGGCTAGCCTGGAGCTCACCAGGCCTGGGGAGCTGGGACGGGGCCCCGCTGCCGGA
CircID chr12:6839532|6839692
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MSPGPCRSPRWWGCRDRELAVLLLMSHRGF
Nucleotide Sequence CTGAGTCCAGGCCCTTGTAGGTCCCCAAGATGGTGGGGGTGCAGGGACAGAGAGCTTGCTGTTCTGCTCCTGATGTCACACAGGGGCTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab