CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6868866|6869132
Strand +
CircType exon
Host Gene ENSG00000111669.13;
Algorism CIRI2;
Sequence CCACGTGGCTCCGCAGTCTTTGATCATGCCAGGGCTAAAGGAAGAGATGAAGCCAAGGTTCAGCAGGGAGCCCACCCTGTGGCTTTCCCCTCAACGAGGAAAGTGAGGGAAGGGTCCCACACACCCCTCTCCACCTCGATCTCACCTGATCTCCCCAGTAAAAGCCCCATTAGTCACTTTGTAGCAGTTCTGCGCAGCCACAGCAATCTTGGGATCTAGCTTCTGCCGGGCGAAGTCGATATAGGCAGTAGGGGGAGCACAAACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6868866|6869132 hsa-miR-221-5p 0 0 1
chr12:6868866|6869132 hsa-miR-221-3p 0 0 1
chr12:6868866|6869132 hsa-miR-222-5p 0 0 1
chr12:6868866|6869132 hsa-miR-222-3p 0 0 1
chr12:6868866|6869132 hsa-miR-185-5p 0 0 1
chr12:6868866|6869132 hsa-miR-185-3p 0 0 1
chr12:6868866|6869132 hsa-miR-370-5p 0 0 1
chr12:6868866|6869132 hsa-miR-370-3p 0 0 1
chr12:6868866|6869132 hsa-miR-520g-5p 0 0 1
chr12:6868866|6869132 hsa-miR-520g-3p 0 0 1
chr12:6868866|6869132 hsa-miR-520h 0 0 1
chr12:6868866|6869132 hsa-miR-604 0 0 1
chr12:6868866|6869132 hsa-miR-647 0 1 1
chr12:6868866|6869132 hsa-miR-658 0 0 1
chr12:6868866|6869132 hsa-miR-298 0 0 1
chr12:6868866|6869132 hsa-miR-541-5p 0 0 1
chr12:6868866|6869132 hsa-miR-541-3p 0 0 1
chr12:6868866|6869132 hsa-miR-939-5p 0 0 1
chr12:6868866|6869132 hsa-miR-939-3p 0 0 1
chr12:6868866|6869132 hsa-miR-1236-5p 0 0 1
chr12:6868866|6869132 hsa-miR-1236-3p 0 0 1
chr12:6868866|6869132 hsa-miR-1238-5p 0 0 1
chr12:6868866|6869132 hsa-miR-1238-3p 0 0 1
chr12:6868866|6869132 hsa-miR-125a-3p 1 1 1
chr12:6868866|6869132 hsa-miR-1283 0 0 1
chr12:6868866|6869132 hsa-miR-423-5p 0 0 1
chr12:6868866|6869132 hsa-miR-654-5p 0 0 1
chr12:6868866|6869132 hsa-miR-524-5p 0 0 1
chr12:6868866|6869132 hsa-miR-520d-5p 0 0 1
chr12:6868866|6869132 hsa-miR-642 0 0 1
chr12:6868866|6869132 hsa-miR-220c 0 0 1
chr12:6868866|6869132 hsa-miR-644 0 0 1
chr12:6868866|6869132 hsa-miR-218 0 0 1
chr12:6868866|6869132 hsa-miR-129-3p 0 0 1
chr12:6868866|6869132 hsa-miR-147 0 0 1
chr12:6868866|6869132 hsa-miR-147a 0 1 0
chr12:6868866|6869132 hsa-miR-608 1 0 0
chr12:6868866|6869132 hsa-miR-636 1 0 0
chr12:6868866|6869132 hsa-miR-638 1 0 0
chr12:6868866|6869132 hsa-miR-2113 0 1 0
chr12:6868866|6869132 hsa-miR-548u 0 1 0
chr12:6868866|6869132 hsa-miR-3153 0 1 0
chr12:6868866|6869132 hsa-miR-3175 0 1 0
chr12:6868866|6869132 hsa-miR-4450 1 0 0
chr12:6868866|6869132 hsa-miR-4455 0 1 0
chr12:6868866|6869132 hsa-miR-4469 1 0 0
chr12:6868866|6869132 hsa-miR-3689c 1 0 0
chr12:6868866|6869132 hsa-miR-4689 1 0 0
chr12:6868866|6869132 hsa-miR-4706 1 0 0
chr12:6868866|6869132 hsa-miR-5087 1 1 0
chr12:6868866|6869132 hsa-miR-5194 0 1 0
chr12:6868866|6869132 hsa-miR-5787 1 0 0
chr12:6868866|6869132 hsa-miR-6090 1 0 0
chr12:6868866|6869132 hsa-miR-6860 1 0 0
chr12:6868866|6869132 hsa-miR-8073 0 1 0
chr12:6868866|6869132 hsa-miR-8089 1 1 0
chr12:6868866|6869132 hsa-miR-12114 0 1 0
chr12:6868866|6869132 hsa-miR-93-3p 0 1 0
chr12:6868866|6869132 hsa-miR-6734-5p 1 1 0
chr12:6868866|6869132 hsa-miR-6765-5p 1 0 0
chr12:6868866|6869132 hsa-miR-212-5p 0 1 0
chr12:6868866|6869132 hsa-miR-3150a-3p 1 1 0
chr12:6868866|6869132 hsa-miR-6861-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6825-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6728-5p 1 0 0
chr12:6868866|6869132 hsa-miR-8071 1 0 0
chr12:6868866|6869132 hsa-miR-5187-5p 1 0 0
chr12:6868866|6869132 hsa-miR-4722-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6875-3p 1 1 0
chr12:6868866|6869132 hsa-miR-4474-3p 0 1 0
chr12:6868866|6869132 hsa-miR-6759-5p 1 0 0
chr12:6868866|6869132 hsa-miR-197-5p 1 0 0
chr12:6868866|6869132 hsa-miR-491-5p 1 0 0
chr12:6868866|6869132 hsa-miR-3151-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6793-5p 1 0 0
chr12:6868866|6869132 hsa-miR-4753-3p 1 1 0
chr12:6868866|6869132 hsa-miR-6782-5p 1 1 0
chr12:6868866|6869132 hsa-miR-3150b-3p 1 0 0
chr12:6868866|6869132 hsa-miR-7109-5p 1 0 0
chr12:6868866|6869132 hsa-miR-1226-5p 1 0 0
chr12:6868866|6869132 hsa-miR-193b-5p 1 1 0
chr12:6868866|6869132 hsa-miR-193a-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6824-5p 1 0 0
chr12:6868866|6869132 hsa-miR-7106-3p 0 1 0
chr12:6868866|6869132 hsa-miR-6813-3p 0 1 0
chr12:6868866|6869132 hsa-miR-501-5p 0 1 0
chr12:6868866|6869132 hsa-miR-3074-5p 0 1 0
chr12:6868866|6869132 hsa-miR-4746-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6734-3p 0 1 0
chr12:6868866|6869132 hsa-miR-3675-5p 1 1 0
chr12:6868866|6869132 hsa-miR-3689b-3p 1 0 0
chr12:6868866|6869132 hsa-miR-6812-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6865-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6870-5p 1 0 0
chr12:6868866|6869132 hsa-miR-1343-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6752-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6756-5p 1 1 0
chr12:6868866|6869132 hsa-miR-6803-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6763-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6780b-5p 1 0 0
chr12:6868866|6869132 hsa-miR-328-5p 1 0 0
chr12:6868866|6869132 hsa-miR-3689a-3p 1 0 0
chr12:6868866|6869132 hsa-miR-4725-3p 0 1 0
chr12:6868866|6869132 hsa-miR-4745-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6738-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6795-5p 1 1 0
chr12:6868866|6869132 hsa-miR-6858-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6887-5p 1 0 0
chr12:6868866|6869132 hsa-miR-1910-3p 1 0 0
chr12:6868866|6869132 hsa-miR-365a-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6511a-5p 1 0 0
chr12:6868866|6869132 hsa-miR-6731-5p 1 0 0
chr12:6868866|6869132 hsa-miR-5008-3p 1 0 0
chr12:6868866|6869132 hsa-miR-7843-5p 1 0 0
chr12:6868866|6869132 hsa-miR-1914-3p 1 0 0
chr12:6868866|6869132 hsa-miR-6855-5p 1 0 0
chr12:6868866|6869132 hsa-miR-4700-5p 1 0 0
chr12:6868866|6869132 hsa-miR-4667-5p 1 1 0
chr12:6868866|6869132 hsa-miR-10398-5p 0 1 0
chr12:6868866|6869132 hsa-miR-6893-3p 0 1 0
chr12:6868866|6869132 hsa-miR-6529-5p 0 1 0
chr12:6868866|6869132 hsa-miR-10400-3p 0 1 0
chr12:6868866|6869132 hsa-miR-3059-5p 1 0 0
chr12:6868866|6869132 hsa-miR-548az-5p 1 0 0
chr12:6868866|6869132 hsa-miR-7161-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:6868866|6869132
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MIMPGLKEEMKPRFSREPTLWLSPQRGK
Nucleotide Sequence TTGATCATGCCAGGGCTAAAGGAAGAGATGAAGCCAAGGTTCAGCAGGGAGCCCACCCTGTGGCTTTCCCCTCAACGAGGAAAGTGA
CircID chr12:6868866|6869132
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MGLLLGRSGEIEVERGVWDPSLTFLVEGKATGWAPC
Nucleotide Sequence ATGGGGCTTTTACTGGGGAGATCAGGTGAGATCGAGGTGGAGAGGGGTGTGTGGGACCCTTCCCTCACTTTCCTCGTTGAGGGGAAAGCCACAGGGTGGGCTCCCTGCTGA
CircID chr12:6868866|6869132
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MCSPYCLYRLRPAEARSQDCCGCAELLQSD
Nucleotide Sequence TTGTGCTCCCCCTACTGCCTATATCGACTTCGCCCGGCAGAAGCTAGATCCCAAGATTGCTGTGGCTGCGCAGAACTGCTACAAAGTGACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab