CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6923230|6923436
Strand +
CircType exon
Host Gene ENSG00000111674.7;
Algorism CIRI2;
Sequence CTCCCACCCCAGTCATCTTGGGATCTACAGCCACATGAAATACAGACACATCGTTCCCCCAAGTCAGGCCAGTTTTAGGCCATTGAGTTATGGGGAAATGATTAATGGGATGAATGAAAAACAAATAAAATAAATAAATAAATAAATACACTAAAGCCTTATTAGCCAGGCGTGATCACATGCCCAACACTCCCCTCCATCCCAGCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6923230|6923436 hsa-miR-122-5p 0 0 1
chr12:6923230|6923436 hsa-miR-122-3p 0 0 1
chr12:6923230|6923436 hsa-miR-193b-5p 0 0 1
chr12:6923230|6923436 hsa-miR-193b-3p 0 0 1
chr12:6923230|6923436 hsa-miR-608 1 0 1
chr12:6923230|6923436 hsa-miR-625-5p 0 0 1
chr12:6923230|6923436 hsa-miR-625-3p 0 0 1
chr12:6923230|6923436 hsa-miR-1298-5p 0 0 1
chr12:6923230|6923436 hsa-miR-1298-3p 0 0 1
chr12:6923230|6923436 hsa-miR-548e-5p 0 0 1
chr12:6923230|6923436 hsa-miR-548e-3p 0 0 1
chr12:6923230|6923436 hsa-miR-1275 0 0 1
chr12:6923230|6923436 hsa-miR-1292-5p 0 0 1
chr12:6923230|6923436 hsa-miR-1292-3p 0 0 1
chr12:6923230|6923436 hsa-miR-342-5p 0 0 1
chr12:6923230|6923436 hsa-miR-193a-3p 0 0 1
chr12:6923230|6923436 hsa-miR-548a-3p 0 0 1
chr12:6923230|6923436 hsa-miR-548f 0 0 1
chr12:6923230|6923436 hsa-miR-632 1 0 0
chr12:6923230|6923436 hsa-miR-760 1 0 0
chr12:6923230|6923436 hsa-miR-3137 1 0 0
chr12:6923230|6923436 hsa-miR-3147 1 1 0
chr12:6923230|6923436 hsa-miR-3175 1 0 0
chr12:6923230|6923436 hsa-miR-3650 1 0 0
chr12:6923230|6923436 hsa-miR-3674 1 1 0
chr12:6923230|6923436 hsa-miR-4463 0 1 0
chr12:6923230|6923436 hsa-miR-4507 1 0 0
chr12:6923230|6923436 hsa-miR-4525 1 0 0
chr12:6923230|6923436 hsa-miR-4534 0 1 0
chr12:6923230|6923436 hsa-miR-1587 1 0 0
chr12:6923230|6923436 hsa-miR-4651 1 0 0
chr12:6923230|6923436 hsa-miR-4706 1 0 0
chr12:6923230|6923436 hsa-miR-4752 0 1 0
chr12:6923230|6923436 hsa-miR-5087 1 0 0
chr12:6923230|6923436 hsa-miR-5698 1 1 0
chr12:6923230|6923436 hsa-miR-6127 1 0 0
chr12:6923230|6923436 hsa-miR-6133 1 0 0
chr12:6923230|6923436 hsa-miR-10226 1 0 0
chr12:6923230|6923436 hsa-miR-138-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6734-5p 1 0 0
chr12:6923230|6923436 hsa-miR-4731-5p 1 0 0
chr12:6923230|6923436 hsa-miR-7106-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6825-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6799-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6728-5p 1 1 0
chr12:6923230|6923436 hsa-miR-5187-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6757-5p 1 0 0
chr12:6923230|6923436 hsa-miR-4474-3p 1 0 0
chr12:6923230|6923436 hsa-miR-197-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6871-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6732-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6782-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6749-5p 1 0 0
chr12:6923230|6923436 hsa-miR-4787-5p 1 0 0
chr12:6923230|6923436 hsa-miR-149-3p 1 0 0
chr12:6923230|6923436 hsa-miR-6824-5p 1 1 0
chr12:6923230|6923436 hsa-miR-6812-5p 1 1 0
chr12:6923230|6923436 hsa-miR-6870-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6737-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6752-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6803-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6819-5p 1 1 0
chr12:6923230|6923436 hsa-miR-1249-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6722-3p 1 0 0
chr12:6923230|6923436 hsa-miR-6751-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6763-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6779-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6797-5p 1 0 0
chr12:6923230|6923436 hsa-miR-7111-5p 1 0 0
chr12:6923230|6923436 hsa-miR-3620-5p 1 0 0
chr12:6923230|6923436 hsa-miR-4728-5p 1 0 0
chr12:6923230|6923436 hsa-miR-328-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6777-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6795-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6848-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6889-5p 1 0 0
chr12:6923230|6923436 hsa-miR-939-5p 1 0 0
chr12:6923230|6923436 hsa-miR-4769-5p 1 1 0
chr12:6923230|6923436 hsa-miR-3940-5p 1 0 0
chr12:6923230|6923436 hsa-miR-4646-5p 1 0 0
chr12:6923230|6923436 hsa-miR-4747-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6766-5p 0 1 0
chr12:6923230|6923436 hsa-miR-769-3p 1 0 0
chr12:6923230|6923436 hsa-miR-619-5p 1 0 0
chr12:6923230|6923436 hsa-miR-6506-5p 1 0 0
chr12:6923230|6923436 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:6923230|6923436
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MKYRHIVPPSQASFRPLSYGEMINGMNEKQIK
Nucleotide Sequence ATGAAATACAGACACATCGTTCCCCCAAGTCAGGCCAGTTTTAGGCCATTGAGTTATGGGGAAATGATTAATGGGATGAATGAAAAACAAATAAAATAA
CircID chr12:6923230|6923436
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MANKALVYLFIYLFYLFFIHPINHFPITQWPKTGLTWGNDVSVFHVAVDPKMTGVG
Nucleotide Sequence CTGGCTAATAAGGCTTTAGTGTATTTATTTATTTATTTATTTTATTTGTTTTTCATTCATCCCATTAATCATTTCCCCATAACTCAATGGCCTAAAACTGGCCTGACTTGGGGGAACGATGTGTCTGTATTTCATGTGGCTGTAGATCCCAAGATGACTGGGGTGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab