CircRNA Information

General Information
circRNA Basic Information
CircID chr12:69258605|69258787
Strand -
CircType exon
Host Gene ENSG00000111605.15;
Algorism CIRI2;
Sequence CACGTCCACCCTTAGGTCCTCCAGGCCCACCTGGTCCACCAGGTCCTCCACCTCCTGGTCAGGTTCTGCCTCCTCCTCTAGCTGGGCCTCCTAATCGAGGAGATCGCCCTCCACCACCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCTCCATTGGGTCCACTTCCTCCTGGCCCTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:69258605|69258787 hsa-miR-198 0 0 1
chr12:69258605|69258787 hsa-miR-492 0 1 1
chr12:69258605|69258787 hsa-miR-631 0 0 1
chr12:69258605|69258787 hsa-miR-650 1 1 1
chr12:69258605|69258787 hsa-miR-765 1 1 1
chr12:69258605|69258787 hsa-miR-541-5p 0 0 1
chr12:69258605|69258787 hsa-miR-541-3p 0 0 1
chr12:69258605|69258787 hsa-miR-877-5p 0 0 1
chr12:69258605|69258787 hsa-miR-877-3p 0 0 1
chr12:69258605|69258787 hsa-miR-665 1 1 1
chr12:69258605|69258787 hsa-miR-1827 0 0 1
chr12:69258605|69258787 hsa-miR-485-5p 0 1 1
chr12:69258605|69258787 hsa-miR-654-5p 0 1 1
chr12:69258605|69258787 hsa-miR-876-3p 0 0 1
chr12:69258605|69258787 hsa-miR-582-3p 0 0 1
chr12:69258605|69258787 hsa-miR-323-5p 0 0 1
chr12:69258605|69258787 hsa-miR-1254 0 0 1
chr12:69258605|69258787 hsa-miR-453 0 0 1
chr12:69258605|69258787 hsa-miR-601 1 0 0
chr12:69258605|69258787 hsa-miR-611 1 0 0
chr12:69258605|69258787 hsa-miR-658 1 0 0
chr12:69258605|69258787 hsa-miR-711 0 1 0
chr12:69258605|69258787 hsa-miR-2861 1 1 0
chr12:69258605|69258787 hsa-miR-3141 1 0 0
chr12:69258605|69258787 hsa-miR-3148 1 1 0
chr12:69258605|69258787 hsa-miR-4266 0 1 0
chr12:69258605|69258787 hsa-miR-3661 0 1 0
chr12:69258605|69258787 hsa-miR-3916 1 0 0
chr12:69258605|69258787 hsa-miR-1268b 1 0 0
chr12:69258605|69258787 hsa-miR-3135b 1 0 0
chr12:69258605|69258787 hsa-miR-4478 1 0 0
chr12:69258605|69258787 hsa-miR-4510 1 0 0
chr12:69258605|69258787 hsa-miR-4669 1 0 0
chr12:69258605|69258787 hsa-miR-4688 1 0 0
chr12:69258605|69258787 hsa-miR-4706 1 0 0
chr12:69258605|69258787 hsa-miR-4721 1 0 0
chr12:69258605|69258787 hsa-miR-4739 1 0 0
chr12:69258605|69258787 hsa-miR-4741 1 0 0
chr12:69258605|69258787 hsa-miR-4751 1 0 0
chr12:69258605|69258787 hsa-miR-5090 1 0 0
chr12:69258605|69258787 hsa-miR-5698 1 0 0
chr12:69258605|69258787 hsa-miR-6069 1 0 0
chr12:69258605|69258787 hsa-miR-6124 1 0 0
chr12:69258605|69258787 hsa-miR-6127 1 0 0
chr12:69258605|69258787 hsa-miR-6130 1 0 0
chr12:69258605|69258787 hsa-miR-6134 0 1 0
chr12:69258605|69258787 hsa-miR-6165 1 0 0
chr12:69258605|69258787 hsa-miR-12114 0 1 0
chr12:69258605|69258787 hsa-miR-12115 1 1 0
chr12:69258605|69258787 hsa-miR-370-3p 1 0 0
chr12:69258605|69258787 hsa-miR-4700-3p 1 0 0
chr12:69258605|69258787 hsa-miR-6765-5p 1 0 0
chr12:69258605|69258787 hsa-miR-671-5p 1 0 0
chr12:69258605|69258787 hsa-miR-7106-5p 1 1 0
chr12:69258605|69258787 hsa-miR-6894-5p 1 1 0
chr12:69258605|69258787 hsa-miR-8071 1 1 0
chr12:69258605|69258787 hsa-miR-766-5p 1 1 0
chr12:69258605|69258787 hsa-miR-1227-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6515-5p 0 1 0
chr12:69258605|69258787 hsa-miR-6089 1 0 0
chr12:69258605|69258787 hsa-miR-6880-5p 1 1 0
chr12:69258605|69258787 hsa-miR-7847-3p 1 1 0
chr12:69258605|69258787 hsa-miR-4695-5p 1 1 0
chr12:69258605|69258787 hsa-miR-6746-5p 1 0 0
chr12:69258605|69258787 hsa-miR-4722-5p 1 0 0
chr12:69258605|69258787 hsa-miR-7154-3p 1 1 0
chr12:69258605|69258787 hsa-miR-197-5p 1 0 0
chr12:69258605|69258787 hsa-miR-8069 1 0 0
chr12:69258605|69258787 hsa-miR-6732-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6805-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6798-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6782-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6850-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6786-5p 1 0 0
chr12:69258605|69258787 hsa-miR-7109-5p 1 0 0
chr12:69258605|69258787 hsa-miR-4640-5p 1 1 0
chr12:69258605|69258787 hsa-miR-296-3p 1 0 0
chr12:69258605|69258787 hsa-miR-6749-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6824-5p 1 0 0
chr12:69258605|69258787 hsa-miR-3925-5p 1 1 0
chr12:69258605|69258787 hsa-miR-6781-5p 1 0 0
chr12:69258605|69258787 hsa-miR-4800-5p 0 1 0
chr12:69258605|69258787 hsa-miR-4776-5p 1 1 0
chr12:69258605|69258787 hsa-miR-6895-5p 0 1 0
chr12:69258605|69258787 hsa-miR-887-5p 0 1 0
chr12:69258605|69258787 hsa-miR-520g-5p 0 1 0
chr12:69258605|69258787 hsa-miR-1233-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6769b-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6778-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6787-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6743-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6752-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6756-5p 1 1 0
chr12:69258605|69258787 hsa-miR-6769a-5p 1 1 0
chr12:69258605|69258787 hsa-miR-6803-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6815-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6819-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6851-5p 1 1 0
chr12:69258605|69258787 hsa-miR-7107-5p 1 0 0
chr12:69258605|69258787 hsa-miR-11181-3p 1 1 0
chr12:69258605|69258787 hsa-miR-1249-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6780a-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6797-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6808-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6879-5p 1 0 0
chr12:69258605|69258787 hsa-miR-7111-5p 1 1 0
chr12:69258605|69258787 hsa-miR-328-5p 1 0 0
chr12:69258605|69258787 hsa-miR-4649-5p 1 0 0
chr12:69258605|69258787 hsa-miR-4726-5p 1 1 0
chr12:69258605|69258787 hsa-miR-6729-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6735-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6738-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6794-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6795-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6848-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6858-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6887-5p 1 0 0
chr12:69258605|69258787 hsa-miR-4436b-3p 1 1 0
chr12:69258605|69258787 hsa-miR-6831-5p 1 1 0
chr12:69258605|69258787 hsa-miR-1910-3p 0 1 0
chr12:69258605|69258787 hsa-miR-6511a-5p 0 1 0
chr12:69258605|69258787 hsa-miR-3116 0 1 0
chr12:69258605|69258787 hsa-miR-4716-3p 1 1 0
chr12:69258605|69258787 hsa-miR-6785-5p 1 0 0
chr12:69258605|69258787 hsa-miR-6762-5p 1 0 0
chr12:69258605|69258787 hsa-miR-320a-3p 1 0 0
chr12:69258605|69258787 hsa-miR-6884-5p 0 1 0
chr12:69258605|69258787 hsa-miR-323b-5p 1 1 0
chr12:69258605|69258787 hsa-miR-494-5p 1 0 0
chr12:69258605|69258787 hsa-miR-410-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:69258605|69258787
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MGLLIEEIALHHQFFFLDNLLGSLHWVHFLLALH
Nucleotide Sequence CTGGGCCTCCTAATCGAGGAGATCGCCCTCCACCACCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCTCCATTGGGTCCACTTCCTCCTGGCCCTCCAC
CircID chr12:69258605|69258787
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPP
Nucleotide Sequence CTGCCTCCTCCTCTAGCTGGGCCTCCTAATCGAGGAGATCGCCCTCCACCACCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCTCCATTGGGTCCACTTCCTCCTGGCCCTCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab