CircRNA Information

General Information
circRNA Basic Information
CircID chr12:6938925|6939149
Strand -
CircType exon
Host Gene ENSG00000111676.13;
Algorism CIRI2;
Sequence CCTTTCCCCTTTCATCCGAGCCTGGGGCCCCTGGAGCGAGAACGTCTAGCGCTGGCAGCTGGGCCAGCCCTGCGGCCTGACATGTCCTATGCTGAGCGGCTGGCAGCTGAGAGGCAGCACGCAGAAAGGGTGGCGGCCCTGGGCAATGACCCACTGGCCCGGCTGCAGATGCTCAATGTGACTCCCCATCACCACCAGCACTCCCACATCCACTCGCACCTGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:6938925|6939149 hsa-miR-22-5p 0 0 1
chr12:6938925|6939149 hsa-miR-22-3p 0 0 1
chr12:6938925|6939149 hsa-miR-23a-5p 0 0 1
chr12:6938925|6939149 hsa-miR-23a-3p 0 0 1
chr12:6938925|6939149 hsa-miR-23b-5p 0 0 1
chr12:6938925|6939149 hsa-miR-23b-3p 0 0 1
chr12:6938925|6939149 hsa-miR-484 0 0 1
chr12:6938925|6939149 hsa-miR-488-5p 0 0 1
chr12:6938925|6939149 hsa-miR-488-3p 0 0 1
chr12:6938925|6939149 hsa-miR-616-5p 0 0 1
chr12:6938925|6939149 hsa-miR-616-3p 0 0 1
chr12:6938925|6939149 hsa-miR-657 0 0 1
chr12:6938925|6939149 hsa-miR-939-5p 0 0 1
chr12:6938925|6939149 hsa-miR-939-3p 0 0 1
chr12:6938925|6939149 hsa-miR-1202 1 0 1
chr12:6938925|6939149 hsa-miR-1205 0 0 1
chr12:6938925|6939149 hsa-miR-1197 0 0 1
chr12:6938925|6939149 hsa-miR-296-5p 0 0 1
chr12:6938925|6939149 hsa-miR-512-3p 0 0 1
chr12:6938925|6939149 hsa-miR-299-3p 0 0 1
chr12:6938925|6939149 hsa-miR-1184 0 0 1
chr12:6938925|6939149 hsa-miR-1207-3p 0 0 1
chr12:6938925|6939149 hsa-miR-876-3p 0 0 1
chr12:6938925|6939149 hsa-miR-323-5p 0 0 1
chr12:6938925|6939149 hsa-miR-138 0 0 1
chr12:6938925|6939149 hsa-miR-544 0 0 1
chr12:6938925|6939149 hsa-miR-720 0 0 1
chr12:6938925|6939149 hsa-miR-608 1 0 0
chr12:6938925|6939149 hsa-miR-762 1 0 0
chr12:6938925|6939149 hsa-miR-3137 1 0 0
chr12:6938925|6939149 hsa-miR-3665 1 0 0
chr12:6938925|6939149 hsa-miR-3907 1 0 0
chr12:6938925|6939149 hsa-miR-4481 1 0 0
chr12:6938925|6939149 hsa-miR-4526 1 0 0
chr12:6938925|6939149 hsa-miR-4538 1 0 0
chr12:6938925|6939149 hsa-miR-3972 1 0 0
chr12:6938925|6939149 hsa-miR-4651 1 0 0
chr12:6938925|6939149 hsa-miR-4654 1 0 0
chr12:6938925|6939149 hsa-miR-4706 1 0 0
chr12:6938925|6939149 hsa-miR-4734 1 0 0
chr12:6938925|6939149 hsa-miR-6069 1 0 0
chr12:6938925|6939149 hsa-miR-6127 1 0 0
chr12:6938925|6939149 hsa-miR-6131 1 0 0
chr12:6938925|6939149 hsa-miR-8075 1 0 0
chr12:6938925|6939149 hsa-miR-12115 1 0 0
chr12:6938925|6939149 hsa-miR-138-5p 1 0 0
chr12:6938925|6939149 hsa-miR-7155-5p 1 0 0
chr12:6938925|6939149 hsa-miR-4433a-3p 1 0 0
chr12:6938925|6939149 hsa-miR-125a-3p 1 0 0
chr12:6938925|6939149 hsa-miR-6089 1 0 0
chr12:6938925|6939149 hsa-miR-4755-3p 1 0 0
chr12:6938925|6939149 hsa-miR-1301-3p 1 0 0
chr12:6938925|6939149 hsa-miR-6741-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6787-3p 1 0 0
chr12:6938925|6939149 hsa-miR-3194-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6882-3p 1 0 0
chr12:6938925|6939149 hsa-miR-1343-3p 1 0 0
chr12:6938925|6939149 hsa-miR-615-5p 1 0 0
chr12:6938925|6939149 hsa-miR-3944-3p 1 0 0
chr12:6938925|6939149 hsa-miR-1908-3p 1 0 0
chr12:6938925|6939149 hsa-miR-6784-5p 1 0 0
chr12:6938925|6939149 hsa-miR-296-3p 1 0 0
chr12:6938925|6939149 hsa-miR-6823-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6501-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6789-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6781-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6877-5p 1 0 0
chr12:6938925|6939149 hsa-miR-574-5p 1 0 0
chr12:6938925|6939149 hsa-miR-5189-3p 1 0 0
chr12:6938925|6939149 hsa-miR-1343-5p 1 0 0
chr12:6938925|6939149 hsa-miR-5001-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6726-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6743-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6752-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6756-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6803-5p 1 0 0
chr12:6938925|6939149 hsa-miR-7110-5p 1 0 0
chr12:6938925|6939149 hsa-miR-10401-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6751-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6763-5p 1 0 0
chr12:6938925|6939149 hsa-miR-1909-3p 1 0 0
chr12:6938925|6939149 hsa-miR-4685-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6777-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6889-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6511b-5p 1 0 0
chr12:6938925|6939149 hsa-miR-1914-3p 1 0 0
chr12:6938925|6939149 hsa-miR-6785-5p 1 0 0
chr12:6938925|6939149 hsa-miR-3184-5p 1 0 0
chr12:6938925|6939149 hsa-miR-6849-5p 1 0 0
chr12:6938925|6939149 hsa-miR-10400-3p 1 0 0
chr12:6938925|6939149 hsa-miR-6744-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:6938925|6939149
ORF Type ORF1
Protein Length 68
Nucleotide Length 204
Protein Sequence MGPLERERLALAAGPALRPDMSYAERLAAERQHAERVAALGNDPLARLQMLNVTPHHHQHSHIHSHLH
Nucleotide Sequence CTGGGGCCCCTGGAGCGAGAACGTCTAGCGCTGGCAGCTGGGCCAGCCCTGCGGCCTGACATGTCCTATGCTGAGCGGCTGGCAGCTGAGAGGCAGCACGCAGAAAGGGTGGCGGCCCTGGGCAATGACCCACTGGCCCGGCTGCAGATGCTCAATGTGACTCCCCATCACCACCAGCACTCCCACATCCACTCGCACCTGCAC
CircID chr12:6938925|6939149
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MGQPCGLTCPMLSGWQLRGSTQKGWRPWAMTHWPGCRCSM
Nucleotide Sequence CTGGGCCAGCCCTGCGGCCTGACATGTCCTATGCTGAGCGGCTGGCAGCTGAGAGGCAGCACGCAGAAAGGGTGGCGGCCCTGGGCAATGACCCACTGGCCCGGCTGCAGATGCTCAATGTGA
CircID chr12:6938925|6939149
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence MVVMGSHIEHLQPGQWVIAQGRHPFCVLPLSCQPLSIGHVRPQGWPSCQR
Nucleotide Sequence CTGGTGGTGATGGGGAGTCACATTGAGCATCTGCAGCCGGGCCAGTGGGTCATTGCCCAGGGCCGCCACCCTTTCTGCGTGCTGCCTCTCAGCTGCCAGCCGCTCAGCATAGGACATGTCAGGCCGCAGGGCTGGCCCAGCTGCCAGCGCTAG
CircID chr12:6938925|6939149
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MSICSRASGSLPRAATLSACCLSAASRSA
Nucleotide Sequence TTGAGCATCTGCAGCCGGGCCAGTGGGTCATTGCCCAGGGCCGCCACCCTTTCTGCGTGCTGCCTCTCAGCTGCCAGCCGCTCAGCATAG
CircID chr12:6938925|6939149
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MRAASQLPAAQHRTCQAAGLAQLPALDVLAPGAPGSDERGK
Nucleotide Sequence CTGCGTGCTGCCTCTCAGCTGCCAGCCGCTCAGCATAGGACATGTCAGGCCGCAGGGCTGGCCCAGCTGCCAGCGCTAGACGTTCTCGCTCCAGGGGCCCCAGGCTCGGATGAAAGGGGAAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab