CircRNA Information

General Information
circRNA Basic Information
CircID chr12:70246384|70246570
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGGATCTGTAGTGGATTTTGTAACACAAAGAGGCAGAATATCCAGGGTACCAGGTAGGGCAGTTTAGGGGCAGAGTTAATATGAGGTGTACTGTAATGTTTGAGTGGAATTACATACAGTGTTAATCAAGAGATCTAGTGCTATGGTAGAACTTATTCTGCTTGATGATACAGGTGACTGTTCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:70246384|70246570 hsa-miR-10a-5p 0 0 1
chr12:70246384|70246570 hsa-miR-10a-3p 0 0 1
chr12:70246384|70246570 hsa-miR-10b-5p 0 0 1
chr12:70246384|70246570 hsa-miR-10b-3p 0 0 1
chr12:70246384|70246570 hsa-miR-212-5p 0 0 1
chr12:70246384|70246570 hsa-miR-212-3p 0 0 1
chr12:70246384|70246570 hsa-miR-132-5p 0 0 1
chr12:70246384|70246570 hsa-miR-132-3p 0 0 1
chr12:70246384|70246570 hsa-miR-141-5p 0 0 1
chr12:70246384|70246570 hsa-miR-141-3p 0 0 1
chr12:70246384|70246570 hsa-miR-144-5p 0 0 1
chr12:70246384|70246570 hsa-miR-144-3p 0 0 1
chr12:70246384|70246570 hsa-miR-200a-5p 0 0 1
chr12:70246384|70246570 hsa-miR-200a-3p 0 0 1
chr12:70246384|70246570 hsa-miR-380-5p 0 0 1
chr12:70246384|70246570 hsa-miR-380-3p 0 0 1
chr12:70246384|70246570 hsa-miR-567 0 0 1
chr12:70246384|70246570 hsa-miR-599 0 0 1
chr12:70246384|70246570 hsa-miR-618 0 0 1
chr12:70246384|70246570 hsa-miR-619-5p 0 0 1
chr12:70246384|70246570 hsa-miR-619-3p 0 0 1
chr12:70246384|70246570 hsa-miR-888-5p 0 0 1
chr12:70246384|70246570 hsa-miR-888-3p 0 0 1
chr12:70246384|70246570 hsa-miR-297 0 0 1
chr12:70246384|70246570 hsa-miR-548g-5p 0 0 1
chr12:70246384|70246570 hsa-miR-548g-3p 0 0 1
chr12:70246384|70246570 hsa-miR-1263 1 1 1
chr12:70246384|70246570 hsa-miR-1279 0 0 1
chr12:70246384|70246570 hsa-miR-28-3p 0 0 1
chr12:70246384|70246570 hsa-miR-582-5p 0 0 1
chr12:70246384|70246570 hsa-miR-524-5p 0 0 1
chr12:70246384|70246570 hsa-miR-324-3p 0 0 1
chr12:70246384|70246570 hsa-miR-520d-5p 0 0 1
chr12:70246384|70246570 hsa-miR-371-5p 0 0 1
chr12:70246384|70246570 hsa-miR-323-3p 0 0 1
chr12:70246384|70246570 hsa-miR-101 0 0 1
chr12:70246384|70246570 hsa-miR-346 1 0 0
chr12:70246384|70246570 hsa-miR-1913 1 1 0
chr12:70246384|70246570 hsa-miR-4308 0 1 0
chr12:70246384|70246570 hsa-miR-4522 1 1 0
chr12:70246384|70246570 hsa-miR-18a-3p 1 1 0
chr12:70246384|70246570 hsa-miR-3194-3p 1 0 0
chr12:70246384|70246570 hsa-miR-6822-3p 1 0 0
chr12:70246384|70246570 hsa-miR-210-5p 1 0 0
chr12:70246384|70246570 hsa-miR-3189-5p 1 0 0
chr12:70246384|70246570 hsa-miR-7110-3p 1 0 0
chr12:70246384|70246570 hsa-miR-6728-3p 1 0 0
chr12:70246384|70246570 hsa-miR-6882-3p 1 0 0
chr12:70246384|70246570 hsa-miR-345-3p 1 0 0
chr12:70246384|70246570 hsa-miR-4436b-5p 1 0 0
chr12:70246384|70246570 hsa-miR-6772-3p 1 0 0
chr12:70246384|70246570 hsa-miR-5001-3p 1 1 0
chr12:70246384|70246570 hsa-miR-1306-5p 1 0 0
chr12:70246384|70246570 hsa-miR-1236-3p 1 0 0
chr12:70246384|70246570 hsa-miR-6504-3p 0 1 0
chr12:70246384|70246570 hsa-miR-6889-3p 1 0 0
chr12:70246384|70246570 hsa-miR-4732-3p 1 0 0
chr12:70246384|70246570 hsa-miR-4999-5p 0 1 0
chr12:70246384|70246570 hsa-miR-6752-3p 1 0 0
chr12:70246384|70246570 hsa-miR-6773-3p 1 0 0
chr12:70246384|70246570 hsa-miR-6738-3p 1 0 0
chr12:70246384|70246570 hsa-miR-4749-3p 1 0 0
chr12:70246384|70246570 hsa-miR-5195-5p 1 0 0
chr12:70246384|70246570 hsa-miR-6748-3p 1 0 0
chr12:70246384|70246570 hsa-miR-3173-5p 1 0 0
chr12:70246384|70246570 hsa-miR-6761-3p 1 0 0
chr12:70246384|70246570 hsa-miR-18b-3p 1 1 0
chr12:70246384|70246570 hsa-miR-6799-3p 1 1 0
chr12:70246384|70246570 hsa-miR-6805-3p 1 0 0
chr12:70246384|70246570 hsa-miR-504-5p 1 0 0
chr12:70246384|70246570 hsa-miR-376b-5p 0 1 0
chr12:70246384|70246570 hsa-miR-376c-5p 0 1 0
chr12:70246384|70246570 hsa-miR-148b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:70246384|70246570
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MYVIPLKHYSTPHINSAPKLPYLVPWIFCLFVLQNPLQIQ
Nucleotide Sequence CTGTATGTAATTCCACTCAAACATTACAGTACACCTCATATTAACTCTGCCCCTAAACTGCCCTACCTGGTACCCTGGATATTCTGCCTCTTTGTGTTACAAAATCCACTACAGATCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab