CircNet

General Information

circRNA Basic Information

CircID	chr12:71566404\|71580423
Strand	+
CircType	exon
Host Gene	ENSG00000139292.12;
Algorism	CIRI2;
Sequence	ACATTTCTATGACAATCCCATCCAGTTTGTTGGGAGATCTGCTTTTCAACATTTACCTGAACTAAGAACACTGACTCTGAATGGTGCCTCACAAATAACTGAATTTCCTGATTTAACTGGAACTGCAAACCTGGAGAGTCTGACTTTAACTGGAGCACAGATCTCATCTCTTCCTCAAACCGTCTGCAATCAGTTACCTAATCTCCAAGTGCTAGATCTGTCTTACAACCTATTAGAAGATTTACCCAGTTTTTCAGTCTGCCAAAAGCTTCAGAAAATGAATTTGGCTTGGAACAAAATTGCTATTATTCACCCCAATGCATTTTCCACTTTGCCATCCCTAATAAAGCTGGACCTATCGTCCAACCTCCTGTCGTCTTTTCCTATAACTGGGTTACATGGTTTAACTCACTTAAAATTAACAGGAAATCATGCCTTACAGAGCTTGATATCATCTGAAAACTTTCCAGAACTCAA

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr12:71566404\|71580423	hsa-miR-3978	1	1	1
chr12:71566404\|71580423	hsa-miR-143-3p	1	1	1
chr12:71566404\|71580423	hsa-miR-6765-5p	1	1	1
chr12:71566404\|71580423	hsa-miR-1273d	1	1	1
chr12:71566404\|71580423	hsa-miR-6728-5p	1	1	1
chr12:71566404\|71580423	hsa-miR-4695-5p	1	1	1
chr12:71566404\|71580423	hsa-miR-593-5p	1	1	1
chr12:71566404\|71580423	hsa-miR-145-5p	1	1	1
chr12:71566404\|71580423	hsa-miR-432-5p	1	1	1
chr12:71566404\|71580423	hsa-miR-1229-5p	1	1	1
chr12:71566404\|71580423	hsa-miR-7161-3p	1	1	1
chr12:71566404\|71580423	hsa-miR-3162-5p	1	1	1
chr12:71566404\|71580423	hsa-miR-4804-5p	1	1	1
chr12:71566404\|71580423	hsa-miR-483-5p	1	1	1
chr12:71566404\|71580423	hsa-miR-29b-3p	1	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr12:71566404\|71580423
ORF Type	ORF1
Protein Length	66
Nucleotide Length	198
Protein Sequence	MNLAWNKIAIIHPNAFSTLPSLIKLDLSSNLLSSFPITGLHGLTHLKLTGNHALQSLISSENFPEL
Nucleotide Sequence	ATGAATTTGGCTTGGAACAAAATTGCTATTATTCACCCCAATGCATTTTCCACTTTGCCATCCCTAATAAAGCTGGACCTATCGTCCAACCTCCTGTCGTCTTTTCCTATAACTGGGTTACATGGTTTAACTCACTTAAAATTAACAGGAAATCATGCCTTACAGAGCTTGATATCATCTGAAAACTTTCCAGAACTC

CircID	chr12:71566404\|71580423
ORF Type	ORF2
Protein Length	55
Nucleotide Length	165
Protein Sequence	MRSVLQLKSDSPGLQFQLNQEIQLFVRHHSESVFLVQVNVEKQISQQTGWDCHRN
Nucleotide Sequence	ATGAGATCTGTGCTCCAGTTAAAGTCAGACTCTCCAGGTTTGCAGTTCCAGTTAAATCAGGAAATTCAGTTATTTGTGAGGCACCATTCAGAGTCAGTGTTCTTAGTTCAGGTAAATGTTGAAAAGCAGATCTCCCAACAAACTGGATGGGATTGTCATAGAAAT

CircID	chr12:71566404\|71580423
ORF Type	ORF3
Protein Length	57
Nucleotide Length	171
Protein Sequence	LEQNCYYSPQCIFHFAIPNKAGPIVQPPVVFSYNWVTWFNSLKINRKSCLTELDII*
Nucleotide Sequence	TTGGAACAAAATTGCTATTATTCACCCCAATGCATTTTCCACTTTGCCATCCCTAATAAAGCTGGACCTATCGTCCAACCTCCTGTCGTCTTTTCCTATAACTGGGTTACATGGTTTAACTCACTTAAAATTAACAGGAAATCATGCCTTACAGAGCTTGATATCATCTGA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr12:71566404\|71580423	ELAVL1	1	0	0
chr12:71566404\|71580423	SRSF7	0	0	1
chr12:71566404\|71580423	HNRNPC	1	0	0
chr12:71566404\|71580423	BUD13	0	0	3
chr12:71566404\|71580423	NOP58	1	0	2
chr12:71566404\|71580423	SF3B4	1	0	0
chr12:71566404\|71580423	U2AF2	1	3	1
chr12:71566404\|71580423	PRPF8	0	2	1
chr12:71566404\|71580423	DKC1	0	0	1
chr12:71566404\|71580423	IGF2BP1	0	0	1
chr12:71566404\|71580423	IGF2BP3	0	0	1
chr12:71566404\|71580423	IGF2BP2	1	0	2
chr12:71566404\|71580423	AGO2	0	0	1
chr12:71566404\|71580423	FBL	0	0	1

CircRNA Information