CircRNA Information

General Information
circRNA Basic Information
CircID chr12:7158046|7158285
Strand +
CircType exon
Host Gene ENSG00000139182.12;
Algorism CIRI2;
Sequence AGCCCAGAAGTGAGGGATGGGGGGCCGGGGGAGGGGCAGGGCGGACTCCAGAGGGCCCGCTGGGGTTTTGAAATGAAAGGAGGACTGGTTCTGAAGCCTCTCTCCCTCTTGGTCTCTGTGTTCCCAGAAAGTCCTTCTCCCATGTCTGGAGTGTCTGTTTCACCAGGGCAGAATTCCCCCTCTGCGTGGGGAGAGGTGTAGGCCTTAGTAGCGGTGTGGGGGGGTCTCGATGATGCGTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:7158046|7158285 hsa-miR-185-5p 0 0 1
chr12:7158046|7158285 hsa-miR-185-3p 0 0 1
chr12:7158046|7158285 hsa-miR-494-5p 0 0 1
chr12:7158046|7158285 hsa-miR-494-3p 0 0 1
chr12:7158046|7158285 hsa-miR-579-5p 0 0 1
chr12:7158046|7158285 hsa-miR-579-3p 0 0 1
chr12:7158046|7158285 hsa-miR-607 0 0 1
chr12:7158046|7158285 hsa-miR-612 0 0 1
chr12:7158046|7158285 hsa-miR-625-5p 0 0 1
chr12:7158046|7158285 hsa-miR-625-3p 0 0 1
chr12:7158046|7158285 hsa-miR-1323 0 0 1
chr12:7158046|7158285 hsa-miR-874-5p 0 0 1
chr12:7158046|7158285 hsa-miR-874-3p 0 0 1
chr12:7158046|7158285 hsa-miR-548o-3p 0 0 1
chr12:7158046|7158285 hsa-miR-1292-5p 0 0 1
chr12:7158046|7158285 hsa-miR-1292-3p 0 0 1
chr12:7158046|7158285 hsa-miR-548o 0 0 1
chr12:7158046|7158285 hsa-miR-146b-3p 0 0 1
chr12:7158046|7158285 hsa-miR-1289 0 0 1
chr12:7158046|7158285 hsa-miR-508-5p 0 0 1
chr12:7158046|7158285 hsa-miR-324-3p 0 0 1
chr12:7158046|7158285 hsa-miR-1285 0 0 1
chr12:7158046|7158285 hsa-miR-516b 0 0 1
chr12:7158046|7158285 hsa-miR-220a 0 0 1
chr12:7158046|7158285 hsa-miR-326 1 0 0
chr12:7158046|7158285 hsa-miR-611 1 0 0
chr12:7158046|7158285 hsa-miR-1470 1 0 0
chr12:7158046|7158285 hsa-miR-1976 1 0 0
chr12:7158046|7158285 hsa-miR-3909 1 0 0
chr12:7158046|7158285 hsa-miR-4739 1 0 0
chr12:7158046|7158285 hsa-miR-4751 1 0 0
chr12:7158046|7158285 hsa-miR-4767 1 0 0
chr12:7158046|7158285 hsa-miR-5193 1 0 0
chr12:7158046|7158285 hsa-miR-5100 1 0 0
chr12:7158046|7158285 hsa-miR-6088 1 0 0
chr12:7158046|7158285 hsa-miR-8089 1 0 0
chr12:7158046|7158285 hsa-miR-6749-3p 1 0 0
chr12:7158046|7158285 hsa-miR-3194-3p 1 0 0
chr12:7158046|7158285 hsa-miR-6836-3p 1 0 0
chr12:7158046|7158285 hsa-miR-766-3p 1 0 0
chr12:7158046|7158285 hsa-miR-296-5p 1 0 0
chr12:7158046|7158285 hsa-miR-6840-5p 1 0 0
chr12:7158046|7158285 hsa-miR-3189-5p 1 0 0
chr12:7158046|7158285 hsa-miR-1915-5p 1 0 0
chr12:7158046|7158285 hsa-miR-4725-5p 1 0 0
chr12:7158046|7158285 hsa-miR-6760-5p 1 0 0
chr12:7158046|7158285 hsa-miR-6765-3p 1 0 0
chr12:7158046|7158285 hsa-miR-6882-3p 1 0 0
chr12:7158046|7158285 hsa-miR-532-3p 1 0 0
chr12:7158046|7158285 hsa-miR-939-3p 1 0 0
chr12:7158046|7158285 hsa-miR-6740-5p 1 0 0
chr12:7158046|7158285 hsa-miR-6763-3p 1 0 0
chr12:7158046|7158285 hsa-miR-1247-5p 1 0 0
chr12:7158046|7158285 hsa-miR-6803-3p 1 0 0
chr12:7158046|7158285 hsa-miR-7113-3p 1 0 0
chr12:7158046|7158285 hsa-miR-6769a-3p 1 0 0
chr12:7158046|7158285 hsa-miR-339-5p 1 0 0
chr12:7158046|7158285 hsa-miR-4707-5p 1 0 0
chr12:7158046|7158285 hsa-miR-4687-5p 1 0 0
chr12:7158046|7158285 hsa-miR-4758-3p 1 0 0
chr12:7158046|7158285 hsa-miR-1910-5p 1 0 0
chr12:7158046|7158285 hsa-miR-6752-3p 1 0 0
chr12:7158046|7158285 hsa-miR-5088-3p 1 0 0
chr12:7158046|7158285 hsa-miR-4749-3p 1 0 0
chr12:7158046|7158285 hsa-miR-328-3p 1 0 0
chr12:7158046|7158285 hsa-miR-6859-3p 1 0 0
chr12:7158046|7158285 hsa-miR-4649-3p 1 0 0
chr12:7158046|7158285 hsa-miR-6777-3p 1 0 0
chr12:7158046|7158285 hsa-miR-331-3p 1 0 0
chr12:7158046|7158285 hsa-miR-3173-5p 1 0 0
chr12:7158046|7158285 hsa-miR-6798-3p 1 0 0
chr12:7158046|7158285 hsa-miR-6846-3p 1 0 0
chr12:7158046|7158285 hsa-miR-1249-3p 1 0 0
chr12:7158046|7158285 hsa-miR-3162-3p 1 0 0
chr12:7158046|7158285 hsa-miR-1249-5p 1 0 0
chr12:7158046|7158285 hsa-miR-6797-5p 1 0 0
chr12:7158046|7158285 hsa-miR-4716-3p 1 0 0
chr12:7158046|7158285 hsa-miR-10398-5p 1 0 0
chr12:7158046|7158285 hsa-miR-6727-3p 1 0 0
chr12:7158046|7158285 hsa-miR-193b-3p 1 0 0
chr12:7158046|7158285 hsa-miR-6529-5p 1 0 0
chr12:7158046|7158285 hsa-miR-6801-3p 1 0 0
chr12:7158046|7158285 hsa-miR-10392-3p 1 0 0
chr12:7158046|7158285 hsa-miR-7114-3p 1 0 0
chr12:7158046|7158285 hsa-miR-5195-3p 1 0 0
chr12:7158046|7158285 hsa-miR-6814-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:7158046|7158285
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MKGGLVLKPLSLLVSVFPESPSPMSGVSVSPGQNSPSAWGEV
Nucleotide Sequence ATGAAAGGAGGACTGGTTCTGAAGCCTCTCTCCCTCTTGGTCTCTGTGTTCCCAGAAAGTCCTTCTCCCATGTCTGGAGTGTCTGTTTCACCAGGGCAGAATTCCCCCTCTGCGTGGGGAGAGGTGTAG
CircID chr12:7158046|7158285
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MCSQKVLLPCLECLFHQGRIPPLRGERCRP
Nucleotide Sequence CTGTGTTCCCAGAAAGTCCTTCTCCCATGTCTGGAGTGTCTGTTTCACCAGGGCAGAATTCCCCCTCTGCGTGGGGAGAGGTGTAGGCCTTAG
CircID chr12:7158046|7158285
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MGEGLSGNTETKRERGFRTSPPFISKPQRALWSPPCPSPGPPSLTSG
Nucleotide Sequence ATGGGAGAAGGACTTTCTGGGAACACAGAGACCAAGAGGGAGAGAGGCTTCAGAACCAGTCCTCCTTTCATTTCAAAACCCCAGCGGGCCCTCTGGAGTCCGCCCTGCCCCTCCCCCGGCCCCCCATCCCTCACTTCTGGG
CircID chr12:7158046|7158285
ORF Type ORF4
Protein Length 55
Nucleotide Length 165
Protein Sequence MVKQTLQTWEKDFLGTQRPRGREASEPVLLSFQNPSGPSGVRPAPPPAPHPSLLG
Nucleotide Sequence CTGGTGAAACAGACACTCCAGACATGGGAGAAGGACTTTCTGGGAACACAGAGACCAAGAGGGAGAGAGGCTTCAGAACCAGTCCTCCTTTCATTTCAAAACCCCAGCGGGCCCTCTGGAGTCCGCCCTGCCCCTCCCCCGGCCCCCCATCCCTCACTTCTGGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab