CircRNA Information

General Information
circRNA Basic Information
CircID chr12:71584903|71585221
Strand +
CircType exon
Host Gene ENSG00000139292.11;
Algorism CIRI2;
Sequence ATGGTCATTAGAATGAAATCCCATGGATCACAGCCTCTACCTAGCAATGTAGGTCATTGAAAACCCTTATTTTCCTAATTCCCCCAACAACCTCTTGAGTTTGTGGGTTTAAATAAACCCATTTGGAAAGCAAGTGGGTTCTCCCTCCTCCCAAAATGATTACATTGGTGAGTTTAAAGAGAATGCAATTCAAATCATGGAGAATCTTTTCTAAAGAAAATTTCAATCTGCTTTTTTGATCTGGGCTCACTTAAATAGTGTGATCGATCTATCCCTTAGCTGAACAAATTATACAAAGCAGCATTTAGACTTATATTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:71584903|71585221 hsa-miR-33a-5p 0 0 1
chr12:71584903|71585221 hsa-miR-33a-3p 0 0 1
chr12:71584903|71585221 hsa-miR-192-5p 0 0 1
chr12:71584903|71585221 hsa-miR-192-3p 0 0 1
chr12:71584903|71585221 hsa-miR-215-5p 0 0 1
chr12:71584903|71585221 hsa-miR-215-3p 0 0 1
chr12:71584903|71585221 hsa-miR-136-5p 0 0 1
chr12:71584903|71585221 hsa-miR-136-3p 0 0 1
chr12:71584903|71585221 hsa-miR-375-5p 0 0 1
chr12:71584903|71585221 hsa-miR-375-3p 0 0 1
chr12:71584903|71585221 hsa-miR-380-5p 0 0 1
chr12:71584903|71585221 hsa-miR-380-3p 0 0 1
chr12:71584903|71585221 hsa-miR-335-5p 0 0 1
chr12:71584903|71585221 hsa-miR-335-3p 0 0 1
chr12:71584903|71585221 hsa-miR-196b-5p 0 0 1
chr12:71584903|71585221 hsa-miR-196b-3p 0 0 1
chr12:71584903|71585221 hsa-miR-568 0 0 1
chr12:71584903|71585221 hsa-miR-589-5p 0 0 1
chr12:71584903|71585221 hsa-miR-589-3p 0 0 1
chr12:71584903|71585221 hsa-miR-591 0 0 1
chr12:71584903|71585221 hsa-miR-625-5p 0 0 1
chr12:71584903|71585221 hsa-miR-625-3p 0 0 1
chr12:71584903|71585221 hsa-miR-629-5p 0 0 1
chr12:71584903|71585221 hsa-miR-629-3p 0 0 1
chr12:71584903|71585221 hsa-miR-33b-5p 0 0 1
chr12:71584903|71585221 hsa-miR-33b-3p 0 0 1
chr12:71584903|71585221 hsa-miR-640 0 0 1
chr12:71584903|71585221 hsa-miR-1264 0 0 1
chr12:71584903|71585221 hsa-miR-1298-5p 0 0 1
chr12:71584903|71585221 hsa-miR-1298-3p 0 0 1
chr12:71584903|71585221 hsa-miR-765 0 0 1
chr12:71584903|71585221 hsa-miR-1305 0 0 1
chr12:71584903|71585221 hsa-miR-1275 0 0 1
chr12:71584903|71585221 hsa-miR-1225-3p 0 0 1
chr12:71584903|71585221 hsa-miR-485-5p 1 0 1
chr12:71584903|71585221 hsa-miR-576-5p 0 0 1
chr12:71584903|71585221 hsa-miR-876-5p 0 0 1
chr12:71584903|71585221 hsa-miR-515-5p 0 0 1
chr12:71584903|71585221 hsa-miR-1233 0 0 1
chr12:71584903|71585221 hsa-miR-219-2-3p 0 0 1
chr12:71584903|71585221 hsa-miR-196a 0 0 1
chr12:71584903|71585221 hsa-miR-203 0 0 1
chr12:71584903|71585221 hsa-miR-3132 1 0 0
chr12:71584903|71585221 hsa-miR-4450 1 0 0
chr12:71584903|71585221 hsa-miR-3689c 0 1 0
chr12:71584903|71585221 hsa-miR-4525 1 0 0
chr12:71584903|71585221 hsa-miR-4675 1 0 0
chr12:71584903|71585221 hsa-miR-4739 1 0 0
chr12:71584903|71585221 hsa-miR-5698 1 0 0
chr12:71584903|71585221 hsa-miR-6860 1 0 0
chr12:71584903|71585221 hsa-miR-7974 1 1 0
chr12:71584903|71585221 hsa-miR-8066 0 1 0
chr12:71584903|71585221 hsa-miR-12114 1 1 0
chr12:71584903|71585221 hsa-miR-12127 1 0 0
chr12:71584903|71585221 hsa-miR-323a-5p 1 0 0
chr12:71584903|71585221 hsa-miR-7106-5p 1 1 0
chr12:71584903|71585221 hsa-miR-6857-5p 1 0 0
chr12:71584903|71585221 hsa-miR-4687-3p 1 0 0
chr12:71584903|71585221 hsa-miR-6757-5p 1 0 0
chr12:71584903|71585221 hsa-miR-197-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6716-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6782-5p 1 0 0
chr12:71584903|71585221 hsa-miR-30b-3p 0 1 0
chr12:71584903|71585221 hsa-miR-7109-5p 1 1 0
chr12:71584903|71585221 hsa-miR-6740-5p 0 1 0
chr12:71584903|71585221 hsa-miR-296-3p 1 0 0
chr12:71584903|71585221 hsa-miR-6866-5p 0 1 0
chr12:71584903|71585221 hsa-miR-664b-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6509-5p 0 1 0
chr12:71584903|71585221 hsa-miR-3689b-3p 0 1 0
chr12:71584903|71585221 hsa-miR-4763-3p 1 0 0
chr12:71584903|71585221 hsa-miR-6870-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6752-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6803-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6813-5p 1 0 0
chr12:71584903|71585221 hsa-miR-7110-5p 1 0 0
chr12:71584903|71585221 hsa-miR-1249-5p 0 1 0
chr12:71584903|71585221 hsa-miR-6751-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6780a-5p 0 1 0
chr12:71584903|71585221 hsa-miR-7111-5p 1 1 0
chr12:71584903|71585221 hsa-miR-3689a-3p 0 1 0
chr12:71584903|71585221 hsa-miR-6777-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6795-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6887-5p 1 0 0
chr12:71584903|71585221 hsa-miR-4723-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6831-5p 1 1 0
chr12:71584903|71585221 hsa-miR-939-5p 1 0 0
chr12:71584903|71585221 hsa-miR-6773-5p 0 1 0
chr12:71584903|71585221 hsa-miR-377-5p 0 1 0
chr12:71584903|71585221 hsa-miR-6855-5p 1 0 0
chr12:71584903|71585221 hsa-miR-4716-3p 1 0 0
chr12:71584903|71585221 hsa-miR-6884-5p 0 1 0
chr12:71584903|71585221 hsa-miR-548b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:71584903|71585221
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MESKWVLPPPKMITLVSLKRMQFKSWRIFSKENFNLLF
Nucleotide Sequence TTGGAAAGCAAGTGGGTTCTCCCTCCTCCCAAAATGATTACATTGGTGAGTTTAAAGAGAATGCAATTCAAATCATGGAGAATCTTTTCTAAAGAAAATTTCAATCTGCTTTTTTGA
CircID chr12:71584903|71585221
ORF Type ORF2
Protein Length 61
Nucleotide Length 186
Protein Sequence MKFSLEKILHDLNCILFKLTNVIILGGGRTHLLSKWVYLNPQTQEVVGGIRKIRVFNDLHC
Nucleotide Sequence TTGAAATTTTCTTTAGAAAAGATTCTCCATGATTTGAATTGCATTCTCTTTAAACTCACCAATGTAATCATTTTGGGAGGAGGGAGAACCCACTTGCTTTCCAAATGGGTTTATTTAAACCCACAAACTCAAGAGGTTGTTGGGGGAATTAGGAAAATAAGGGTTTTCAATGACCTACATTGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab