CircRNA Information

General Information
circRNA Basic Information
CircID chr12:75480783|75481967
Strand +
CircType exon
Host Gene ENSG00000139278.8;
Algorism CIRI2;
Sequence CCAGTCCAGATGTTCTCTCCCAGTGAAGTGAAGTTTGGGTGCAGCTTGTGGGGTGGCTTCAGCCGTGTATTATGTGAAAACTGGCAATTGCTGGCCCATGCTTTTGCAATTTGGGCTAGTGCTGGGTCCCAAGTCATGTATAGCATATCACTGGCTGTTGGTTTCACCTCTGATCGGAACTTGTTATGGATTCGAACGCAGTCTTTGATGAAATCTTCATTTTCGATATCTGGCAAAATATTTGCTGTGTGTGAATAATTGGAGACAAAAGAAACCATCCAGGCTATTGTAGCAAGTGTGACACGCATGCTTTGTCTGGCATGGAGCCTTGGGAGGCTGCAGTCCAGAGCCGCCGCAGTTTCTGAGAGTGTGATTGCCTGAGTGCTCAGCCCACAGCTTTGCAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:75480783|75481967 hsa-miR-23a-5p 0 0 1
chr12:75480783|75481967 hsa-miR-23a-3p 0 0 1
chr12:75480783|75481967 hsa-miR-221-5p 0 0 1
chr12:75480783|75481967 hsa-miR-221-3p 0 0 1
chr12:75480783|75481967 hsa-miR-222-5p 0 0 1
chr12:75480783|75481967 hsa-miR-222-3p 0 0 1
chr12:75480783|75481967 hsa-miR-23b-5p 0 0 1
chr12:75480783|75481967 hsa-miR-23b-3p 0 0 1
chr12:75480783|75481967 hsa-miR-150-5p 0 0 1
chr12:75480783|75481967 hsa-miR-150-3p 0 0 1
chr12:75480783|75481967 hsa-miR-185-5p 0 0 1
chr12:75480783|75481967 hsa-miR-185-3p 0 0 1
chr12:75480783|75481967 hsa-miR-320a-5p 0 0 1
chr12:75480783|75481967 hsa-miR-320a-3p 0 0 1
chr12:75480783|75481967 hsa-miR-377-5p 0 0 1
chr12:75480783|75481967 hsa-miR-377-3p 0 0 1
chr12:75480783|75481967 hsa-miR-383-5p 0 0 1
chr12:75480783|75481967 hsa-miR-383-3p 0 0 1
chr12:75480783|75481967 hsa-miR-422a 0 1 1
chr12:75480783|75481967 hsa-miR-527 0 0 1
chr12:75480783|75481967 hsa-miR-510-5p 0 0 1
chr12:75480783|75481967 hsa-miR-510-3p 0 0 1
chr12:75480783|75481967 hsa-miR-545-5p 0 0 1
chr12:75480783|75481967 hsa-miR-545-3p 0 0 1
chr12:75480783|75481967 hsa-miR-575 0 0 1
chr12:75480783|75481967 hsa-miR-596 0 0 1
chr12:75480783|75481967 hsa-miR-597-5p 0 0 1
chr12:75480783|75481967 hsa-miR-597-3p 0 0 1
chr12:75480783|75481967 hsa-miR-602 0 0 1
chr12:75480783|75481967 hsa-miR-655-5p 0 0 1
chr12:75480783|75481967 hsa-miR-655-3p 0 0 1
chr12:75480783|75481967 hsa-miR-190b-5p 0 0 1
chr12:75480783|75481967 hsa-miR-190b-3p 0 0 1
chr12:75480783|75481967 hsa-miR-760 0 1 1
chr12:75480783|75481967 hsa-miR-944 0 0 1
chr12:75480783|75481967 hsa-miR-1202 0 0 1
chr12:75480783|75481967 hsa-miR-1284 0 0 1
chr12:75480783|75481967 hsa-miR-1288-5p 0 0 1
chr12:75480783|75481967 hsa-miR-1288-3p 0 0 1
chr12:75480783|75481967 hsa-miR-1184 0 1 1
chr12:75480783|75481967 hsa-miR-330-3p 0 0 1
chr12:75480783|75481967 hsa-miR-338-5p 0 0 1
chr12:75480783|75481967 hsa-miR-320b 0 1 1
chr12:75480783|75481967 hsa-miR-320c 0 1 1
chr12:75480783|75481967 hsa-miR-1302 0 0 1
chr12:75480783|75481967 hsa-miR-320d 0 1 1
chr12:75480783|75481967 hsa-miR-509-3-5p 0 0 1
chr12:75480783|75481967 hsa-miR-509-5p 0 0 1
chr12:75480783|75481967 hsa-miR-518a-5p 0 0 1
chr12:75480783|75481967 hsa-miR-515-5p 0 0 1
chr12:75480783|75481967 hsa-miR-450b-5p 0 0 1
chr12:75480783|75481967 hsa-miR-369-3p 0 1 1
chr12:75480783|75481967 hsa-miR-378 0 0 1
chr12:75480783|75481967 hsa-miR-1269 0 0 1
chr12:75480783|75481967 hsa-miR-1254 0 0 1
chr12:75480783|75481967 hsa-miR-190 0 0 1
chr12:75480783|75481967 hsa-miR-647 1 0 0
chr12:75480783|75481967 hsa-miR-1269a 0 1 0
chr12:75480783|75481967 hsa-miR-3167 0 1 0
chr12:75480783|75481967 hsa-miR-4296 0 1 0
chr12:75480783|75481967 hsa-miR-378c 0 1 0
chr12:75480783|75481967 hsa-miR-4322 0 1 0
chr12:75480783|75481967 hsa-miR-4257 0 1 0
chr12:75480783|75481967 hsa-miR-4254 1 0 0
chr12:75480783|75481967 hsa-miR-4265 0 1 0
chr12:75480783|75481967 hsa-miR-3662 0 1 0
chr12:75480783|75481967 hsa-miR-378f 0 1 0
chr12:75480783|75481967 hsa-miR-4429 0 1 0
chr12:75480783|75481967 hsa-miR-1269b 0 1 0
chr12:75480783|75481967 hsa-miR-1587 0 1 0
chr12:75480783|75481967 hsa-miR-4656 1 1 0
chr12:75480783|75481967 hsa-miR-4663 0 1 0
chr12:75480783|75481967 hsa-miR-4734 1 0 0
chr12:75480783|75481967 hsa-miR-5707 0 1 0
chr12:75480783|75481967 hsa-miR-8085 0 1 0
chr12:75480783|75481967 hsa-miR-12126 0 1 0
chr12:75480783|75481967 hsa-miR-134-3p 0 1 0
chr12:75480783|75481967 hsa-miR-7160-5p 1 0 0
chr12:75480783|75481967 hsa-miR-6858-3p 1 0 0
chr12:75480783|75481967 hsa-miR-4738-3p 0 1 0
chr12:75480783|75481967 hsa-miR-4786-3p 0 1 0
chr12:75480783|75481967 hsa-miR-4640-5p 0 1 0
chr12:75480783|75481967 hsa-miR-30c-2-3p 0 1 0
chr12:75480783|75481967 hsa-miR-6501-5p 1 0 0
chr12:75480783|75481967 hsa-miR-6818-3p 0 1 0
chr12:75480783|75481967 hsa-miR-7156-3p 0 1 0
chr12:75480783|75481967 hsa-miR-6500-3p 0 1 0
chr12:75480783|75481967 hsa-miR-3120-3p 0 1 0
chr12:75480783|75481967 hsa-miR-4758-3p 1 1 0
chr12:75480783|75481967 hsa-miR-6778-3p 0 1 0
chr12:75480783|75481967 hsa-miR-6741-3p 0 1 0
chr12:75480783|75481967 hsa-miR-4632-3p 1 0 0
chr12:75480783|75481967 hsa-miR-6794-3p 1 0 0
chr12:75480783|75481967 hsa-miR-518c-5p 0 1 0
chr12:75480783|75481967 hsa-miR-10400-5p 1 0 0
chr12:75480783|75481967 hsa-miR-5001-5p 1 0 0
chr12:75480783|75481967 hsa-miR-6851-5p 1 1 0
chr12:75480783|75481967 hsa-miR-6780a-5p 1 1 0
chr12:75480783|75481967 hsa-miR-3620-5p 0 1 0
chr12:75480783|75481967 hsa-miR-5189-5p 1 0 0
chr12:75480783|75481967 hsa-miR-4685-5p 0 1 0
chr12:75480783|75481967 hsa-miR-30c-1-3p 0 1 0
chr12:75480783|75481967 hsa-miR-6736-5p 1 0 0
chr12:75480783|75481967 hsa-miR-378a-3p 0 1 0
chr12:75480783|75481967 hsa-miR-4731-3p 0 1 0
chr12:75480783|75481967 hsa-miR-6784-3p 1 0 0
chr12:75480783|75481967 hsa-miR-4676-5p 0 1 0
chr12:75480783|75481967 hsa-miR-4789-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:75480783|75481967
ORF Type ORF1
Protein Length 82
Nucleotide Length 249
Protein Sequence MFSPSEVKFGCSLWGGFSRVLCENWQLLAHAFAIWASAGSQVMYSISLAVGFTSDRNLLWIRTQSLMKSSFSISGKIFAVCE
Nucleotide Sequence ATGTTCTCTCCCAGTGAAGTGAAGTTTGGGTGCAGCTTGTGGGGTGGCTTCAGCCGTGTATTATGTGAAAACTGGCAATTGCTGGCCCATGCTTTTGCAATTTGGGCTAGTGCTGGGTCCCAAGTCATGTATAGCATATCACTGGCTGTTGGTTTCACCTCTGATCGGAACTTGTTATGGATTCGAACGCAGTCTTTGATGAAATCTTCATTTTCGATATCTGGCAAAATATTTGCTGTGTGTGAATAA
CircID chr12:75480783|75481967
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence METKETIQAIVASVTRMLCLAWSLGRLQSRAAAVSESVIA
Nucleotide Sequence TTGGAGACAAAAGAAACCATCCAGGCTATTGTAGCAAGTGTGACACGCATGCTTTGTCTGGCATGGAGCCTTGGGAGGCTGCAGTCCAGAGCCGCCGCAGTTTCTGAGAGTGTGATTGCCTGA
CircID chr12:75480783|75481967
ORF Type ORF3
Protein Length 57
Nucleotide Length 174
Protein Sequence MGAACGVASAVYYVKTGNCWPMLLQFGLVLGPKSCIAYHWLLVSPLIGTCYGFERSL
Nucleotide Sequence TTGGGTGCAGCTTGTGGGGTGGCTTCAGCCGTGTATTATGTGAAAACTGGCAATTGCTGGCCCATGCTTTTGCAATTTGGGCTAGTGCTGGGTCCCAAGTCATGTATAGCATATCACTGGCTGTTGGTTTCACCTCTGATCGGAACTTGTTATGGATTCGAACGCAGTCTTTGA
CircID chr12:75480783|75481967
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MSPIIHTQQIFCQISKMKISSKTAFESITSSDQR
Nucleotide Sequence TTGTCTCCAATTATTCACACACAGCAAATATTTTGCCAGATATCGAAAATGAAGATTTCATCAAAGACTGCGTTCGAATCCATAACAAGTTCCGATCAGAGGTGA
CircID chr12:75480783|75481967
ORF Type ORF5
Protein Length 59
Nucleotide Length 180
Protein Sequence MWAEHSGNHTLRNCGGSGLQPPKAPCQTKHACHTCYNSLDGFFCLQLFTHSKYFARYRK
Nucleotide Sequence CTGTGGGCTGAGCACTCAGGCAATCACACTCTCAGAAACTGCGGCGGCTCTGGACTGCAGCCTCCCAAGGCTCCATGCCAGACAAAGCATGCGTGTCACACTTGCTACAATAGCCTGGATGGTTTCTTTTGTCTCCAATTATTCACACACAGCAAATATTTTGCCAGATATCGAAAATGA
CircID chr12:75480783|75481967
ORF Type ORF6
Protein Length 134
Nucleotide Length 402
Protein Sequence LQSCGLSTQAITLSETAAALDCSLPRLHARQSMRVTLATIAWMVSFVSNYSHTANILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFTSLGENIWT
Nucleotide Sequence TTGCAAAGCTGTGGGCTGAGCACTCAGGCAATCACACTCTCAGAAACTGCGGCGGCTCTGGACTGCAGCCTCCCAAGGCTCCATGCCAGACAAAGCATGCGTGTCACACTTGCTACAATAGCCTGGATGGTTTCTTTTGTCTCCAATTATTCACACACAGCAAATATTTTGCCAGATATCGAAAATGAAGATTTCATCAAAGACTGCGTTCGAATCCATAACAAGTTCCGATCAGAGGTGAAACCAACAGCCAGTGATATGCTATACATGACTTGGGACCCAGCACTAGCCCAAATTGCAAAAGCATGGGCCAGCAATTGCCAGTTTTCACATAATACACGGCTGAAGCCACCCCACAAGCTGCACCCAAACTTCACTTCACTGGGAGAGAACATCTGGACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab