CircRNA Information

General Information
circRNA Basic Information
CircID chr12:885597|885743
Strand -
CircType exon
Host Gene ENSG00000060237.15;
Algorism CIRI2;
Sequence CTAGTATCCCACCCTTGGTACAGCCTGTTGCCAATGTGCCTGCTGTACAGCAGACACTAATTCATAGTCAGCCTCAACCAGCTTTGCTTCCCAACCAGCCCCATACTCATTGTCCTGAAGTAGATTCTGATACACAACCCAAAGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:885597|885743 hsa-miR-182-5p 0 0 1
chr12:885597|885743 hsa-miR-182-3p 0 0 1
chr12:885597|885743 hsa-miR-214-5p 0 0 1
chr12:885597|885743 hsa-miR-214-3p 0 0 1
chr12:885597|885743 hsa-miR-320a-5p 0 0 1
chr12:885597|885743 hsa-miR-320a-3p 0 0 1
chr12:885597|885743 hsa-miR-346 0 0 1
chr12:885597|885743 hsa-miR-496 0 0 1
chr12:885597|885743 hsa-miR-563 0 0 1
chr12:885597|885743 hsa-miR-632 0 1 1
chr12:885597|885743 hsa-miR-1304-5p 0 0 1
chr12:885597|885743 hsa-miR-1304-3p 0 0 1
chr12:885597|885743 hsa-miR-485-5p 1 1 1
chr12:885597|885743 hsa-miR-361-5p 0 1 1
chr12:885597|885743 hsa-miR-320b 1 1 1
chr12:885597|885743 hsa-miR-320c 0 1 1
chr12:885597|885743 hsa-miR-320d 0 1 1
chr12:885597|885743 hsa-miR-608 1 0 0
chr12:885597|885743 hsa-miR-762 1 0 0
chr12:885597|885743 hsa-miR-1183 1 0 0
chr12:885597|885743 hsa-miR-1294 1 0 0
chr12:885597|885743 hsa-miR-3147 1 0 0
chr12:885597|885743 hsa-miR-3155a 1 0 0
chr12:885597|885743 hsa-miR-320e 0 1 0
chr12:885597|885743 hsa-miR-4269 0 1 0
chr12:885597|885743 hsa-miR-3929 0 1 0
chr12:885597|885743 hsa-miR-4429 1 1 0
chr12:885597|885743 hsa-miR-4436a 0 1 0
chr12:885597|885743 hsa-miR-4498 1 1 0
chr12:885597|885743 hsa-miR-4507 1 0 0
chr12:885597|885743 hsa-miR-1587 1 0 0
chr12:885597|885743 hsa-miR-4651 1 0 0
chr12:885597|885743 hsa-miR-4656 1 0 0
chr12:885597|885743 hsa-miR-4658 1 0 0
chr12:885597|885743 hsa-miR-4741 1 0 0
chr12:885597|885743 hsa-miR-5093 1 0 0
chr12:885597|885743 hsa-miR-5572 1 0 0
chr12:885597|885743 hsa-miR-5787 1 0 0
chr12:885597|885743 hsa-miR-6085 1 0 0
chr12:885597|885743 hsa-miR-138-5p 1 0 0
chr12:885597|885743 hsa-miR-92a-1-5p 1 0 0
chr12:885597|885743 hsa-miR-671-5p 1 0 0
chr12:885597|885743 hsa-miR-6894-5p 1 0 0
chr12:885597|885743 hsa-miR-4687-3p 1 0 0
chr12:885597|885743 hsa-miR-4722-5p 1 0 0
chr12:885597|885743 hsa-miR-6890-5p 1 0 0
chr12:885597|885743 hsa-miR-4474-3p 1 0 0
chr12:885597|885743 hsa-miR-6806-5p 1 0 0
chr12:885597|885743 hsa-miR-8069 1 0 0
chr12:885597|885743 hsa-miR-6796-5p 1 0 0
chr12:885597|885743 hsa-miR-185-3p 1 0 0
chr12:885597|885743 hsa-miR-1226-5p 1 0 0
chr12:885597|885743 hsa-miR-3127-5p 1 0 0
chr12:885597|885743 hsa-miR-296-3p 1 0 0
chr12:885597|885743 hsa-miR-4690-5p 1 1 0
chr12:885597|885743 hsa-miR-937-5p 1 0 0
chr12:885597|885743 hsa-miR-7850-5p 1 0 0
chr12:885597|885743 hsa-miR-3944-5p 1 0 0
chr12:885597|885743 hsa-miR-6814-5p 0 1 0
chr12:885597|885743 hsa-miR-1233-5p 1 0 0
chr12:885597|885743 hsa-miR-1273h-5p 1 1 0
chr12:885597|885743 hsa-miR-5001-5p 1 1 0
chr12:885597|885743 hsa-miR-6756-5p 1 0 0
chr12:885597|885743 hsa-miR-6803-5p 1 0 0
chr12:885597|885743 hsa-miR-6813-5p 1 0 0
chr12:885597|885743 hsa-miR-6751-5p 1 0 0
chr12:885597|885743 hsa-miR-6763-5p 1 0 0
chr12:885597|885743 hsa-miR-6779-5p 1 0 0
chr12:885597|885743 hsa-miR-6780a-5p 1 0 0
chr12:885597|885743 hsa-miR-3620-5p 1 0 0
chr12:885597|885743 hsa-miR-5196-5p 1 0 0
chr12:885597|885743 hsa-miR-4745-5p 1 0 0
chr12:885597|885743 hsa-miR-6846-5p 1 1 0
chr12:885597|885743 hsa-miR-6848-5p 1 0 0
chr12:885597|885743 hsa-miR-939-5p 1 0 0
chr12:885597|885743 hsa-miR-4758-5p 1 0 0
chr12:885597|885743 hsa-miR-6855-5p 1 0 0
chr12:885597|885743 hsa-miR-4646-5p 1 0 0
chr12:885597|885743 hsa-miR-6766-5p 1 1 0
chr12:885597|885743 hsa-miR-6790-5p 1 1 0
chr12:885597|885743 hsa-miR-6884-5p 1 0 0
chr12:885597|885743 hsa-miR-3619-5p 1 1 0
chr12:885597|885743 hsa-miR-10527-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:885597|885743
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MVQPVANVPAVQQTLIHSQPQPALLPNQPHTHCPEVDSDTQPKA
Nucleotide Sequence TTGGTACAGCCTGTTGCCAATGTGCCTGCTGTACAGCAGACACTAATTCATAGTCAGCCTCAACCAGCTTTGCTTCCCAACCAGCCCCATACTCATTGTCCTGAAGTAGATTCTGATACACAACCCAAAGCT
CircID chr12:885597|885743
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MVEADYELVSAVQQAHWQQAVPRVGY
Nucleotide Sequence CTGGTTGAGGCTGACTATGAATTAGTGTCTGCTGTACAGCAGGCACATTGGCAACAGGCTGTACCAAGGGTGGGATACTAG
CircID chr12:885597|885743
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MCIRIYFRTMSMGLVGKQSWLRLTMN
Nucleotide Sequence TTGTGTATCAGAATCTACTTCAGGACAATGAGTATGGGGCTGGTTGGGAAGCAAAGCTGGTTGAGGCTGACTATGAATTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab